DNA RNA polymerases superfamily protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1100 |
| AarI | CACCTGC | 1 cut(s) | 1060 |
| Acc36I | ACCTGC | 1 cut(s) | 1060 |
| Acc65I | GGTACC | 1 cut(s) | 651 |
| AccB1I | GGYRCC | 1 cut(s) | 651 |
| AciI | CCGC | 1 cut(s) | 431 |
| AclWI | GGATC | 2 cut(s) | 471, 484 |
| AcuI | CTGAAG | 2 cut(s) | 25, 627 |
| AfaI | GTAC | 3 cut(s) | 38, 643, 653 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1160 |
| AflII | CTTAAG | 1 cut(s) | 128 |
| AgsI | TTSAA | 6 cut(s) | 19, 507, 565, 848, 872, 919 |
| AjnI | CCWGG | 1 cut(s) | 363 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 533, 565 |
| AleI | CACNNNNGTG | 1 cut(s) | 632 |
| Alw21I | GWGCWC | 2 cut(s) | 405, 522 |
| Alw26I | GTCTC | 1 cut(s) | 39 |
| Alw44I | GTGCAC | 1 cut(s) | 518 |
| AlwI | GGATC | 2 cut(s) | 471, 484 |
| AoxI | GGCC | 3 cut(s) | 102, 135, 932 |
| ApaLI | GTGCAC | 1 cut(s) | 518 |
| ApeKI | GCWGC | 1 cut(s) | 461 |
| AseI | ATTAAT | 1 cut(s) | 279 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 38 |
| Asp718I | GGTACC | 1 cut(s) | 651 |
| AspS9I | GGNCC | 3 cut(s) | 92, 102, 428 |
| AsuHPI | GGTGA | 4 cut(s) | 182, 1041, 1094, 1103 |
| AsuII | TTCGAA | 1 cut(s) | 593 |
| AsuNHI | GCTAGC | 1 cut(s) | 976 |
| AvaII | GGWCC | 2 cut(s) | 92, 428 |
| AxyI | CCTNAGG | 1 cut(s) | 771 |
| BaeGI | GKGCMC | 1 cut(s) | 522 |
| BamHI | GGATCC | 1 cut(s) | 476 |
| BanI | GGYRCC | 1 cut(s) | 651 |
| Bbv12I | GWGCWC | 2 cut(s) | 405, 522 |
| BbvI | GCAGC | 1 cut(s) | 473 |
| BccI | CCATC | 1 cut(s) | 1154 |
| BceAI | ACGGC | 1 cut(s) | 436 |
| BciT130I | CCWGG | 1 cut(s) | 365 |
| BcoDI | GTCTC | 1 cut(s) | 39 |
| BfaI | CTAG | 5 cut(s) | 482, 656, 788, 962, 977 |
| BfmI | CTRYAG | 2 cut(s) | 630, 706 |
| BfrI | CTTAAG | 1 cut(s) | 128 |
| BfuAI | ACCTGC | 1 cut(s) | 1060 |
| BisI | GCNGC | 1 cut(s) | 462 |
| BlsI | GCNGC | 1 cut(s) | 463 |
| BmcAI | AGTACT | 1 cut(s) | 38 |
| Bme1390I | CCNGG | 1 cut(s) | 365 |
| Bme18I | GGWCC | 2 cut(s) | 92, 428 |
| BmgT120I | GGNCC | 3 cut(s) | 92, 102, 428 |
| BmiI | GGNNCC | 6 cut(s) | 103, 329, 429, 478, 603, 653 |
| BmrFI | CCNGG | 1 cut(s) | 365 |
| BmsI | GCATC | 2 cut(s) | 1000, 1000 |
| BmtI | GCTAGC | 1 cut(s) | 980 |
| BpmI | CTGGAG | 1 cut(s) | 656 |
| Bpu14I | TTCGAA | 1 cut(s) | 593 |
| BpuEI | CTTGAG | 2 cut(s) | 11, 81 |
| BsaBI | GATNNNNATC | 1 cut(s) | 615 |
| BsaJI | CCNNGG | 1 cut(s) | 331 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1160 |
| Bse1I | ACTGG | 2 cut(s) | 673, 1104 |
| Bse21I | CCTNAGG | 1 cut(s) | 771 |
| Bse3DI | GCAATG | 3 cut(s) | 203, 391, 993 |
| Bse8I | GATNNNNATC | 1 cut(s) | 615 |
| BseBI | CCWGG | 1 cut(s) | 365 |
| BseDI | CCNNGG | 1 cut(s) | 331 |
| BseGI | GGATG | 2 cut(s) | 559, 991 |
| BseJI | GATNNNNATC | 1 cut(s) | 615 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1160 |
| BseMI | GCAATG | 3 cut(s) | 203, 391, 993 |
| BseMII | CTCAG | 1 cut(s) | 762 |
| BseNI | ACTGG | 2 cut(s) | 673, 1104 |
| BseRI | GAGGAG | 1 cut(s) | 320 |
| BseSI | GKGCMC | 1 cut(s) | 522 |
| BseXI | GCAGC | 1 cut(s) | 473 |
| BshFI | GGCC | 3 cut(s) | 104, 137, 934 |
| BshNI | GGYRCC | 1 cut(s) | 651 |
| BsiHKAI | GWGCWC | 2 cut(s) | 405, 522 |
| BslFI | GGGAC | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1160 |
| BsmAI | GTCTC | 1 cut(s) | 39 |
| BsmFI | GGGAC | 1 cut(s) | 441 |
| BsnI | GGCC | 3 cut(s) | 104, 137, 934 |
| Bsp119I | TTCGAA | 1 cut(s) | 593 |
| Bsp1286I | GDGCHC | 2 cut(s) | 405, 522 |
| Bsp143I | GATC | 3 cut(s) | 476, 610, 841 |
| BspACI | CCGC | 1 cut(s) | 431 |
| BspANI | GGCC | 3 cut(s) | 104, 137, 934 |
| BspCNI | CTCAG | 1 cut(s) | 763 |
| BspLI | GGNNCC | 6 cut(s) | 103, 329, 429, 478, 603, 653 |
| BspMI | ACCTGC | 1 cut(s) | 1060 |
| BspOI | GCTAGC | 1 cut(s) | 980 |
| BspPI | GGATC | 2 cut(s) | 471, 484 |
| BspQI | GCTCTTC | 1 cut(s) | 117 |
| BspT104I | TTCGAA | 1 cut(s) | 593 |
| BspT107I | GGYRCC | 1 cut(s) | 651 |
| BspTI | CTTAAG | 1 cut(s) | 128 |
| BsrDI | GCAATG | 3 cut(s) | 203, 391, 993 |
| BsrI | ACTGG | 2 cut(s) | 673, 1104 |
| BssECI | CCNNGG | 1 cut(s) | 331 |
| BssMI | GATC | 3 cut(s) | 476, 610, 841 |
| Bst2UI | CCWGG | 1 cut(s) | 365 |
| Bst6I | CTCTTC | 2 cut(s) | 117, 689 |
| BstAFI | CTTAAG | 1 cut(s) | 128 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 517 |
| BstBI | TTCGAA | 1 cut(s) | 593 |
| BstC8I | GCNNGC | 3 cut(s) | 978, 1041, 1127 |
| BstDEI | CTNAG | 1 cut(s) | 771 |
| BstEII | GGTNACC | 1 cut(s) | 1047 |
| BstF5I | GGATG | 2 cut(s) | 559, 991 |
| BstKTI | GATC | 3 cut(s) | 479, 613, 844 |
| BstMAI | GTCTC | 1 cut(s) | 39 |
| BstMBI | GATC | 3 cut(s) | 476, 610, 841 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 470, 517, 643, 896 |
| BstNI | CCWGG | 1 cut(s) | 365 |
| BstNSI | RCATGY | 1 cut(s) | 1129 |
| BstPI | GGTNACC | 1 cut(s) | 1047 |
| BstSCI | CCNGG | 1 cut(s) | 363 |
| BstSFI | CTRYAG | 2 cut(s) | 630, 706 |
| BstSLI | GKGCMC | 1 cut(s) | 522 |
| BstV1I | GCAGC | 1 cut(s) | 473 |
| BstX2I | RGATCY | 1 cut(s) | 476 |
| BstYI | RGATCY | 1 cut(s) | 476 |
| Bsu36I | CCTNAGG | 1 cut(s) | 771 |
| BsuRI | GGCC | 3 cut(s) | 104, 137, 934 |
| BtsCI | GGATG | 2 cut(s) | 559, 991 |
| BveI | ACCTGC | 1 cut(s) | 1060 |
| Cac8I | GCNNGC | 3 cut(s) | 978, 1041, 1127 |
| Cfr13I | GGNCC | 3 cut(s) | 92, 102, 428 |
| Csp6I | GTAC | 3 cut(s) | 37, 642, 652 |
| CviAII | CATG | 1 cut(s) | 1126 |
| CviQI | GTAC | 3 cut(s) | 37, 642, 652 |
| DdeI | CTNAG | 1 cut(s) | 771 |
| DpnI | GATC | 3 cut(s) | 478, 612, 843 |
| DpnII | GATC | 3 cut(s) | 476, 610, 841 |
| Eam1104I | CTCTTC | 2 cut(s) | 117, 689 |
| EarI | CTCTTC | 2 cut(s) | 117, 689 |
| Eco147I | AGGCCT | 1 cut(s) | 934 |
| Eco47I | GGWCC | 2 cut(s) | 92, 428 |
| Eco57I | CTGAAG | 2 cut(s) | 25, 627 |
| Eco81I | CCTNAGG | 1 cut(s) | 771 |
| Eco91I | GGTNACC | 1 cut(s) | 1047 |
| EcoO65I | GGTNACC | 1 cut(s) | 1047 |
| EcoRII | CCWGG | 1 cut(s) | 363 |
| EcoT22I | ATGCAT | 1 cut(s) | 993 |
| FaeI | CATG | 1 cut(s) | 1129 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 630, 662 |
| FaqI | GGGAC | 1 cut(s) | 441 |
| FatI | CATG | 1 cut(s) | 1125 |
| Fnu4HI | GCNGC | 1 cut(s) | 462 |
| FokI | GGATG | 2 cut(s) | 566, 978 |
| Fsp4HI | GCNGC | 1 cut(s) | 462 |
| FspBI | CTAG | 5 cut(s) | 482, 656, 788, 962, 977 |
| GluI | GCNGC | 1 cut(s) | 462 |
| GsuI | CTGGAG | 1 cut(s) | 656 |
| HaeIII | GGCC | 3 cut(s) | 104, 137, 934 |
| Hin1II | CATG | 1 cut(s) | 1129 |
| HindIII | AAGCTT | 1 cut(s) | 865 |
| HinfI | GANTC | 4 cut(s) | 742, 820, 835, 1132 |
| HphI | GGTGA | 4 cut(s) | 182, 1041, 1094, 1103 |
| Hpy166II | GTNNAC | 3 cut(s) | 370, 520, 627 |
| Hpy188I | TCNGA | 4 cut(s) | 44, 580, 834, 1020 |
| Hpy188III | TCNNGA | 6 cut(s) | 117, 322, 605, 839, 845, 995 |
| Hpy8I | GTNNAC | 3 cut(s) | 370, 520, 627 |
| HpyAV | CCTTC | 4 cut(s) | 127, 167, 809, 1082 |
| HpyCH4IV | ACGT | 1 cut(s) | 1065 |
| HpyCH4V | TGCA | 7 cut(s) | 493, 511, 520, 637, 991, 1055, 1129 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 470, 517, 643, 896 |
| HpyF3I | CTNAG | 1 cut(s) | 771 |
| HpySE526I | ACGT | 1 cut(s) | 1065 |
| Hsp92II | CATG | 1 cut(s) | 1129 |
| KpnI | GGTACC | 1 cut(s) | 655 |
| Kzo9I | GATC | 3 cut(s) | 476, 610, 841 |
| LguI | GCTCTTC | 1 cut(s) | 117 |
| LmnI | GCTCC | 4 cut(s) | 333, 587, 730, 958 |
| Lsp1109I | GCAGC | 1 cut(s) | 473 |
| LweI | GCATC | 2 cut(s) | 1000, 1000 |
| MaeI | CTAG | 5 cut(s) | 482, 656, 788, 962, 977 |
| MaeII | ACGT | 1 cut(s) | 1065 |
| MaeIII | GTNAC | 5 cut(s) | 63, 444, 802, 1024, 1047 |
| MalI | GATC | 3 cut(s) | 478, 612, 843 |
| MboI | GATC | 3 cut(s) | 476, 610, 841 |
| MboII | GAAGA | 5 cut(s) | 21, 134, 466, 620, 706 |
| MflI | RGATCY | 1 cut(s) | 476 |
| MhlI | GDGCHC | 2 cut(s) | 405, 522 |
| MluCI | AATT | 5 cut(s) | 165, 272, 288, 559, 596 |
| MlyI | GAGTC | 1 cut(s) | 751 |
| Mph1103I | ATGCAT | 1 cut(s) | 993 |
| MroXI | GAANNNNTTC | 1 cut(s) | 38 |
| MseI | TTAA | 3 cut(s) | 129, 279, 911 |
| MslI | CAYNNNNRTG | 4 cut(s) | 233, 315, 525, 632 |
| MspA1I | CMGCKG | 1 cut(s) | 622 |
| MspCI | CTTAAG | 1 cut(s) | 128 |
| MspR9I | CCNGG | 1 cut(s) | 365 |
| MvaI | CCWGG | 1 cut(s) | 365 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 470, 517, 643, 896 |
| NdeII | GATC | 3 cut(s) | 476, 610, 841 |
| NheI | GCTAGC | 1 cut(s) | 976 |
| NlaIII | CATG | 1 cut(s) | 1129 |
| NlaIV | GGNNCC | 6 cut(s) | 103, 329, 429, 478, 603, 653 |
| NmuCI | GTSAC | 2 cut(s) | 1024, 1047 |
| NsiI | ATGCAT | 1 cut(s) | 993 |
| NspI | RCATGY | 1 cut(s) | 1129 |
| NspV | TTCGAA | 1 cut(s) | 593 |
| OliI | CACNNNNGTG | 1 cut(s) | 632 |
| PaeI | GCATGC | 1 cut(s) | 1129 |
| PaqCI | CACCTGC | 1 cut(s) | 1060 |
| PceI | AGGCCT | 1 cut(s) | 934 |
| PciSI | GCTCTTC | 1 cut(s) | 117 |
| PdmI | GAANNNNTTC | 1 cut(s) | 38 |
| PfeI | GAWTC | 3 cut(s) | 820, 835, 1132 |
| PkrI | GCNGC | 1 cut(s) | 463 |
| PleI | GAGTC | 1 cut(s) | 750 |
| PpsI | GAGTC | 1 cut(s) | 750 |
| PshBI | ATTAAT | 1 cut(s) | 279 |
| PsiI | TTATAA | 1 cut(s) | 1100 |
| Psp6I | CCWGG | 1 cut(s) | 363 |
| PspEI | GGTNACC | 1 cut(s) | 1047 |
| PspGI | CCWGG | 1 cut(s) | 363 |
| PspN4I | GGNNCC | 6 cut(s) | 103, 329, 429, 478, 603, 653 |
| PspPI | GGNCC | 3 cut(s) | 92, 102, 428 |
| PsuI | RGATCY | 1 cut(s) | 476 |
| PvuII | CAGCTG | 1 cut(s) | 622 |
| RsaI | GTAC | 3 cut(s) | 38, 643, 653 |
| RsaNI | GTAC | 3 cut(s) | 37, 642, 652 |
| RseI | CAYNNNNRTG | 4 cut(s) | 233, 315, 525, 632 |
| SapI | GCTCTTC | 1 cut(s) | 117 |
| SaqAI | TTAA | 3 cut(s) | 129, 279, 911 |
| SatI | GCNGC | 1 cut(s) | 462 |
| Sau3AI | GATC | 3 cut(s) | 476, 610, 841 |
| Sau96I | GGNCC | 3 cut(s) | 92, 102, 428 |
| ScaI | AGTACT | 1 cut(s) | 38 |
| SchI | GAGTC | 1 cut(s) | 751 |
| ScrFI | CCNGG | 1 cut(s) | 365 |
| SduI | GDGCHC | 2 cut(s) | 405, 522 |
| SfaNI | GCATC | 2 cut(s) | 1000, 1000 |
| SfcI | CTRYAG | 2 cut(s) | 630, 706 |
| SfuI | TTCGAA | 1 cut(s) | 593 |
| SinI | GGWCC | 2 cut(s) | 92, 428 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 233, 315, 525, 632 |
| SmlI | CTYRAG | 3 cut(s) | 26, 96, 128 |
| SmoI | CTYRAG | 3 cut(s) | 26, 96, 128 |
| SphI | GCATGC | 1 cut(s) | 1129 |
| Sse9I | AATT | 5 cut(s) | 165, 272, 288, 559, 596 |
| SseBI | AGGCCT | 1 cut(s) | 934 |
| SsiI | CCGC | 1 cut(s) | 431 |
| SspMI | CTAG | 5 cut(s) | 482, 656, 788, 962, 977 |
| StuI | AGGCCT | 1 cut(s) | 934 |
| StyD4I | CCNGG | 1 cut(s) | 363 |
| TaiI | ACGT | 1 cut(s) | 1068 |
| TaqI | TCGA | 4 cut(s) | 116, 150, 593, 762 |
| TaqII | GACCGA | 1 cut(s) | 1043 |
| TasI | AATT | 5 cut(s) | 165, 272, 288, 559, 596 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TfiI | GAWTC | 3 cut(s) | 820, 835, 1132 |
| Tru1I | TTAA | 3 cut(s) | 129, 279, 911 |
| Tru9I | TTAA | 3 cut(s) | 129, 279, 911 |
| TseFI | GTSAC | 2 cut(s) | 1024, 1047 |
| TseI | GCWGC | 1 cut(s) | 461 |
| Tsp45I | GTSAC | 2 cut(s) | 1024, 1047 |
| TspDTI | ATGAA | 8 cut(s) | 17, 265, 398, 467, 554, 956, 1101, 1163 |
| TspGWI | ACGGA | 1 cut(s) | 105 |
| Vha464I | CTTAAG | 1 cut(s) | 128 |
| VneI | GTGCAC | 1 cut(s) | 518 |
| VpaK11BI | GGWCC | 2 cut(s) | 92, 428 |
| VspI | ATTAAT | 1 cut(s) | 279 |
| XceI | RCATGY | 1 cut(s) | 1129 |
| XmnI | GAANNNNTTC | 1 cut(s) | 38 |
| XspI | CTAG | 5 cut(s) | 482, 656, 788, 962, 977 |
| ZrmI | AGTACT | 1 cut(s) | 38 |
| Zsp2I | ATGCAT | 1 cut(s) | 993 |