FvH4_3g10360

Wall-associated receptor kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
6058978 .. 6062167
3190 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10360.t1

Sequence Viewer

Length: 2265 bp
ATGCAATTCATACTGGTGGTGCTATCGGTTCTCTTCGCATTTGCGGCAGCGGCCGAAGAAGCAGTAGCAGCTGAAGCGGTCCCGCCTCAAGCCAAGCCTGGCTGCACTGACCACTGCGGCAATCTCACCATTCCATATCCGTTTGGCATAGAAAAGGATTGTTACATGTCAGAAGACTTTCCTGTCCGTTGTAACACATCCGCTGAACCTCCAATAGCAACGTTGGGAGATGGTAACATCGTTATTACCAACATATCTCTGGCTGAGGGTGAGATGCAGATACCGCAGTTTGTAGCCAGCGATTGCTATAACAGCCAGGGCGAGAATTATTACGTTCGAACACATCTCTGGGTGCGTCCTTTCACCGTTTCTCATACTAGAAACAAGTTCATTGCCGTTGGTTGCGACACTTACGCAATTTTCAGAGGCTACCGTGCCGACGAAGAGTGGTTAATGAGCGGATGCATGTCCATATGTGACAACAGTGAAAGCGTCGAACAGTCTTGCTCCGGTGTTGGCTGTTGCAAAACTGACATCCCTATCGGACTTTTCAACTACACTGTCACACTGGAAAGTTATTATAATCATACATACGTACTGGACTTCAATAATTGCAGCTATGCCTTCATTGTGGAAGAAGGCAAGTTTACCTTTTCCCCGAATACAAGTTTCCAATATCTGTCCAACATTGAAAAGCTTCCCATGATTCTGAATTGGGAAATTGGAGAAGTTTCATGTGATGAAGCTCAAAAGAAAGATGATTACGCATGCAAGGCAAATAGTAAGTGTGTCGATCGGACCATCAGCAATGACCGATCTGGTCATATTTGCCAATGCCTAGAGGGTTATCAAGGAAATCCCTACCTCCCTGATGGATGCCAAGATATCGATGAGTGCAAGGTTTCAAACACCTGCACCAATGGAACGTGTCAAAATTCACCTGGAAGTTACTCCTGTTTGTGTGACAGAGGGTACATAAGCAATGGAACGAATCATCAAAGTTGTATTCAGGAGATTCGCAAAAAACAAACAAAGACGACGCTCCTGCTTATTGTATCATTGAGTGTAACTGGGGGCTTCTTGGTTCTGTTCGTTGGAATTTCATGGATTTGTTTTACAATGAAGAACAAAAAGCTCAAGAAACTCAAAGAAAGAAACTTTAAAGAGAATGGTGGCTTATTGCTACAACAGAAACTTAAGAACCATGGAGTGCAGACAACAAAAGTATTCACCACAGAAGAACTAGAGAAGGCAACAAACAATTACCATGAGAGCCAAGTCCTCGGAGAAGGAGGCTTCGGAACGGTCTATAAAGGGGTGCTACCCGATAACAAAGAGGTTGCCATAAAGAAGTCAAAAGGAGGTACCTCGACACAGATCGAACAGTTCGTTAATGAGGTGATTGTTCTTTCCCAAATCAACCACAGAAATGTGGTGAAGCTACTAGGTTGTTGTTTAGAGACAGCAGTGCCATTACTAGTATACGAGTTTGTCGCCCATGGCACTCTACATGACCACATTCATAAAAAGAGGTCACCACTGTCATTGGAACTACGAATGAAGATAGCTGTTGAAACAGCAGGAGCACTAGCATACTTACACTCCTCTACATCAATGCCAATCATACATCGAGATGTGAAAGCAGCAAATATACTCTTGGATGATAATTATACAGCCAAAGTGTCGGACTTTGGAGCTTCACGGTTGGTTCCTCTAGGTGAATCCGGAATACAAACTTTAGTGCTCGGGACACGAGGATACCTAGACCCAGAATATATGCAGTCAAATCAACTAACAGAAAAAAGTGATGTTTACAGCCTTGGAGTTGTTCTAGTGGAGCTGCTGACAAGCAGAGTCGCATGTTCTAAAGATAGATACTTAGCAAGCATCTTTGTTTCTTCCATGGATGAAGACTGTTTAAGAGAAATTCTTGATGATGCCATAGTGAATGAGGGAAACATTGAGACAGCAGTAAACGTGGCCAATCTCGCAAAAAGGTGTTTGAGGTTAAAAGGGGAGGAAAGGCCTAGCATGAAAGAAGTCGCCATGGAGCTAGAGGGAATGGCAATTATGGCAAAGCATCCGTGGGGAAAGAATGCTACATTCTGTCCAGAAGAGAATGAGTACTTGCTTGGGTCACCTAATTCAGACAGTTATGTTATGGATGCTAGAGGAGGTGATCAAAATTCTAGTGGTACGACTTCTGGGTATGACAGCATGCAAATTCAGATGTTGATGCCAAATGGAAATGGTGGTGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

755

Amino Acids

83.21

Weight (kDa)

5.33

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 35 - 94 8.8e-11 Wall-associated receptor kinase galacturonan-binding
EGF_CA PF07645 295 - 335 2.7e-07 Calcium-binding EGF domain
Pkinase PF00069 422 - 681 7.9e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 425 - 685 4.2e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AarI CACCTGC 1 cut(s) 920
AasI GACNNNNNNGTC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 920
Acc65I GGTACC 1 cut(s) 1364
AccB1I GGYRCC 1 cut(s) 1364
AccBSI CCGCTC 1 cut(s) 459
AccI GTMKAC 1 cut(s) 1482
AccIII TCCGGA 1 cut(s) 1724
AciI CCGC 8 cut(s) 44, 50, 77, 83, 117, 201, 284, 459
AclI AACGTT 1 cut(s) 221
AcoI YGGCCR 2 cut(s) 51, 1980
AcsI RAATTY 5 cut(s) 934, 1098, 1926, 2185, 2223
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 5 cut(s) 597, 974, 1366, 2126, 2197
AflII CTTAAG 1 cut(s) 1196
AflIII ACRYGT 2 cut(s) 165, 926
AgsI TTSAA 5 cut(s) 553, 607, 692, 906, 1574
AhlI ACTAGT 1 cut(s) 1477
AjnI CCWGG 3 cut(s) 97, 315, 940
Alw21I GWGCWC 2 cut(s) 1588, 1746
Alw26I GTCTC 2 cut(s) 1454, 1958
Ama87I CYCGRG 1 cut(s) 1745
Aor13HI TCCGGA 1 cut(s) 1724
AoxI GGCC 3 cut(s) 51, 1980, 2024
ApeKI GCWGC 6 cut(s) 47, 68, 102, 615, 1643, 1840
ApoI RAATTY 5 cut(s) 934, 1098, 1926, 2185, 2223
Asp700I GAANNNNTTC 2 cut(s) 177, 696
Asp718I GGTACC 1 cut(s) 1364
AspS9I GGNCC 2 cut(s) 79, 798
AsuII TTCGAA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 1745
AvaII GGWCC 2 cut(s) 79, 798
BaeI ACNNNNGTAYC 2 cut(s) 272, 305
BalI TGGCCA 1 cut(s) 1982
BanI GGYRCC 1 cut(s) 1364
BauI CACGAG 1 cut(s) 1752
BbsI GAAGAC 2 cut(s) 180, 1917
Bbv12I GWGCWC 2 cut(s) 1588, 1746
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 6 cut(s) 59, 80, 89, 627, 1655, 1827
BccI CCATC 3 cut(s) 224, 809, 866
BceAI ACGGC 1 cut(s) 380
BcgI CGANNNNNNTGC 2 cut(s) 1027, 1061
BciT130I CCWGG 3 cut(s) 99, 317, 942
BciVI GTATCC 1 cut(s) 1751
BclI TGATCA 1 cut(s) 2179
BcoDI GTCTC 2 cut(s) 1454, 1958
BcuI ACTAGT 1 cut(s) 1477
BfrI CTTAAG 1 cut(s) 1196
BfuAI ACCTGC 1 cut(s) 920
BfuI GTATCC 1 cut(s) 1751
BisI GCNGC 9 cut(s) 45, 48, 51, 69, 103, 118, 616, 1644, 1841
BlsI GCNGC 9 cut(s) 46, 49, 52, 70, 104, 119, 617, 1645, 1842
BmcAI AGTACT 1 cut(s) 2126
Bme1390I CCNGG 3 cut(s) 99, 317, 942
Bme18I GGWCC 2 cut(s) 79, 798
BmeT110I CYCGRG 1 cut(s) 1745
BmgT120I GGNCC 2 cut(s) 79, 798
BmiI GGNNCC 3 cut(s) 81, 1366, 1710
BmrFI CCNGG 3 cut(s) 99, 317, 942
BmrI ACTGGG 1 cut(s) 1080
BmsI GCATC 8 cut(s) 264, 452, 866, 1896, 1927, 2089, 2155, 2226
BmuI ACTGGG 1 cut(s) 1080
BpiI GAAGAC 2 cut(s) 180, 1917
Bpu10I CCTNAGC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 72, 1121
Bsa29I ATCGAT 1 cut(s) 888
BsaAI YACGTR 1 cut(s) 595
BsaJI CCNNGG 8 cut(s) 316, 1204, 1282, 1498, 1819, 1902, 2046, 2084
BsaWI WCCGGW 2 cut(s) 509, 1724
BsaXI ACNNNNNCTCC 2 cut(s) 1586, 1616
Bse1I ACTGG 4 cut(s) 18, 573, 603, 1075
Bse3DI GCAATG 3 cut(s) 390, 814, 988
BseAI TCCGGA 1 cut(s) 1724
BseBI CCWGG 3 cut(s) 99, 317, 942
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 8 cut(s) 316, 1204, 1282, 1498, 1819, 1902, 2046, 2084
BseGI GGATG 8 cut(s) 197, 467, 534, 881, 1666, 1912, 2080, 2170
BseMI GCAATG 3 cut(s) 390, 814, 988
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 4 cut(s) 18, 573, 603, 1075
BseRI GAGGAG 2 cut(s) 1594, 2187
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 6 cut(s) 59, 80, 89, 627, 1655, 1827
BsgI GTGCAG 3 cut(s) 88, 898, 1232
Bsh1285I CGRYCG 2 cut(s) 54, 796
BshFI GGCC 3 cut(s) 53, 1982, 2026
BshNI GGYRCC 1 cut(s) 1364
BshVI ATCGAT 1 cut(s) 888
BsiEI CGRYCG 2 cut(s) 54, 796
BsiHKAI GWGCWC 2 cut(s) 1588, 1746
BsiHKCI CYCGRG 1 cut(s) 1745
BsiSI CCGG 2 cut(s) 510, 1725
BslFI GGGAC 2 cut(s) 65, 1762
BsmAI GTCTC 2 cut(s) 1454, 1958
BsmFI GGGAC 2 cut(s) 65, 1762
BsmI GAATGC 1 cut(s) 2101
BsnI GGCC 3 cut(s) 53, 1982, 2026
BsoBI CYCGRG 1 cut(s) 1745
Bsp119I TTCGAA 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 1588, 1746
Bsp13I TCCGGA 1 cut(s) 1724
Bsp143I GATC 4 cut(s) 793, 815, 1377, 2179
Bsp19I CCATGG 4 cut(s) 1204, 1498, 1902, 2046
BspACI CCGC 8 cut(s) 44, 50, 77, 83, 117, 201, 284, 459
BspANI GGCC 3 cut(s) 53, 1982, 2026
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 888
BspEI TCCGGA 1 cut(s) 1724
BspLI GGNNCC 3 cut(s) 81, 1366, 1710
BspMI ACCTGC 1 cut(s) 920
BspT104I TTCGAA 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 1364
BspTI CTTAAG 1 cut(s) 1196
BsrBI CCGCTC 1 cut(s) 459
BsrDI GCAATG 3 cut(s) 390, 814, 988
BsrI ACTGG 4 cut(s) 18, 573, 603, 1075
BssECI CCNNGG 8 cut(s) 316, 1204, 1282, 1498, 1819, 1902, 2046, 2084
BssMI GATC 4 cut(s) 793, 815, 1377, 2179
BssNAI GTATAC 1 cut(s) 1483
BssSI CACGAG 1 cut(s) 1752
BssT1I CCWWGG 5 cut(s) 1204, 1498, 1819, 1902, 2046
Bst1107I GTATAC 1 cut(s) 1483
Bst2BI CACGAG 1 cut(s) 1752
Bst2UI CCWGG 3 cut(s) 99, 317, 942
Bst6I CTCTTC 3 cut(s) 38, 438, 2109
BstAFI CTTAAG 1 cut(s) 1196
BstBAI YACGTR 1 cut(s) 595
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 4 cut(s) 298, 769, 1885, 2219
BstDEI CTNAG 2 cut(s) 264, 1879
BstDSI CCRYGG 5 cut(s) 1204, 1498, 1902, 2046, 2084
BstEII GGTNACC 2 cut(s) 1533, 2136
BstF5I GGATG 8 cut(s) 197, 467, 534, 881, 1666, 1912, 2080, 2170
BstKTI GATC 4 cut(s) 796, 818, 1380, 2182
BstMAI GTCTC 2 cut(s) 1454, 1958
BstMBI GATC 4 cut(s) 793, 815, 1377, 2179
BstMCI CGRYCG 2 cut(s) 54, 796
BstNI CCWGG 3 cut(s) 99, 317, 942
BstNSI RCATGY 5 cut(s) 169, 469, 771, 1863, 2221
BstPI GGTNACC 2 cut(s) 1533, 2136
BstSCI CCNGG 3 cut(s) 97, 315, 940
BstSNI TACGTA 1 cut(s) 595
BstV1I GCAGC 6 cut(s) 59, 80, 89, 627, 1655, 1827
BstV2I GAAGAC 2 cut(s) 180, 1917
BstZ17I GTATAC 1 cut(s) 1483
BstZI CGGCCG 1 cut(s) 51
Bsu15I ATCGAT 1 cut(s) 888
BsuI GTATCC 1 cut(s) 1751
BsuRI GGCC 3 cut(s) 53, 1982, 2026
BsuTUI ATCGAT 1 cut(s) 888
BtgI CCRYGG 5 cut(s) 1204, 1498, 1902, 2046, 2084
BtsCI GGATG 8 cut(s) 197, 467, 534, 881, 1666, 1912, 2080, 2170
BtsI GCAGTG 2 cut(s) 112, 1473
BtsIMutI CAGTG 7 cut(s) 105, 112, 490, 558, 566, 1473, 1538
BveI ACCTGC 1 cut(s) 920
Cac8I GCNNGC 4 cut(s) 298, 769, 1885, 2219
Cfr13I GGNCC 2 cut(s) 79, 798
ClaI ATCGAT 1 cut(s) 888
CseI GACGC 3 cut(s) 344, 481, 1048
Csp6I GTAC 5 cut(s) 596, 973, 1365, 2125, 2196
CspCI CAANNNNNGTGG 2 cut(s) 1527, 1562
CviQI GTAC 5 cut(s) 596, 973, 1365, 2125, 2196
DdeI CTNAG 2 cut(s) 264, 1879
DpnI GATC 4 cut(s) 795, 817, 1379, 2181
DpnII GATC 4 cut(s) 793, 815, 1377, 2179
DraI TTTAAA 1 cut(s) 1162
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 2 cut(s) 51, 1980
EagI CGGCCG 1 cut(s) 51
Eam1104I CTCTTC 3 cut(s) 38, 438, 2109
EarI CTCTTC 3 cut(s) 38, 438, 2109
EclXI CGGCCG 1 cut(s) 51
Eco105I TACGTA 1 cut(s) 595
Eco130I CCWWGG 5 cut(s) 1204, 1498, 1819, 1902, 2046
Eco147I AGGCCT 1 cut(s) 2026
Eco32I GATATC 1 cut(s) 886
Eco47I GGWCC 2 cut(s) 79, 798
Eco52I CGGCCG 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 1745
Eco91I GGTNACC 2 cut(s) 1533, 2136
EcoO65I GGTNACC 2 cut(s) 1533, 2136
EcoRII CCWGG 3 cut(s) 97, 315, 940
EcoRV GATATC 1 cut(s) 886
EcoT14I CCWWGG 5 cut(s) 1204, 1498, 1819, 1902, 2046
EcoT22I ATGCAT 1 cut(s) 467
ErhI CCWWGG 5 cut(s) 1204, 1498, 1819, 1902, 2046
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FaqI GGGAC 2 cut(s) 65, 1762
FauI CCCGC 1 cut(s) 90
FauNDI CATATG 1 cut(s) 473
FbaI TGATCA 1 cut(s) 2179
FblI GTMKAC 1 cut(s) 1482
Fnu4HI GCNGC 9 cut(s) 45, 48, 51, 69, 103, 118, 616, 1644, 1841
FokI GGATG 8 cut(s) 184, 474, 521, 888, 1673, 1919, 2067, 2177
Fsp4HI GCNGC 9 cut(s) 45, 48, 51, 69, 103, 118, 616, 1644, 1841
GluI GCNGC 9 cut(s) 45, 48, 51, 69, 103, 118, 616, 1644, 1841
HaeIII GGCC 3 cut(s) 53, 1982, 2026
HapII CCGG 2 cut(s) 510, 1725
HgaI GACGC 3 cut(s) 344, 481, 1048
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 5 cut(s) 706, 991, 1015, 1721, 1854
HpaII CCGG 2 cut(s) 510, 1725
Hpy166II GTNNAC 4 cut(s) 648, 1483, 1813, 1975
Hpy188III TCNNGA 7 cut(s) 1010, 1138, 1631, 1725, 1747, 1931, 2111
Hpy8I GTNNAC 4 cut(s) 648, 1483, 1813, 1975
Hpy99I CGWCG 3 cut(s) 443, 497, 1042
HpyAV CCTTC 4 cut(s) 632, 634, 1243, 1283
HpyCH4IV ACGT 5 cut(s) 221, 333, 594, 926, 1977
HpyF3I CTNAG 2 cut(s) 264, 1879
HpySE526I ACGT 5 cut(s) 221, 333, 594, 926, 1977
Kpn2I TCCGGA 1 cut(s) 1724
KpnI GGTACC 1 cut(s) 1368
Ksp22I TGATCA 1 cut(s) 2179
Kzo9I GATC 4 cut(s) 793, 815, 1377, 2179
LmnI GCTCC 6 cut(s) 512, 1047, 1583, 1694, 1837, 2050
Lsp1109I GCAGC 6 cut(s) 59, 80, 89, 627, 1655, 1827
LweI GCATC 8 cut(s) 264, 452, 866, 1896, 1927, 2089, 2155, 2226
MaeII ACGT 5 cut(s) 221, 333, 594, 926, 1977
MalI GATC 4 cut(s) 795, 817, 1379, 2181
MbiI CCGCTC 1 cut(s) 459
MboI GATC 4 cut(s) 793, 815, 1377, 2179
MhlI GDGCHC 2 cut(s) 1588, 1746
MlsI TGGCCA 1 cut(s) 1982
MluNI TGGCCA 1 cut(s) 1982
MlyI GAGTC 1 cut(s) 1863
MmeI TCCRAC 3 cut(s) 708, 1075, 1665
Mox20I TGGCCA 1 cut(s) 1982
Mph1103I ATGCAT 1 cut(s) 467
MroI TCCGGA 1 cut(s) 1724
MroXI GAANNNNTTC 2 cut(s) 177, 696
MscI TGGCCA 1 cut(s) 1982
MseI TTAA 6 cut(s) 452, 1161, 1197, 1392, 1919, 2009
MslI CAYNNNNRTG 3 cut(s) 14, 1428, 1632
Msp20I TGGCCA 1 cut(s) 1982
MspA1I CMGCKG 3 cut(s) 50, 71, 203
MspCI CTTAAG 1 cut(s) 1196
MspI CCGG 2 cut(s) 510, 1725
MspR9I CCNGG 3 cut(s) 99, 317, 942
Mva1269I GAATGC 1 cut(s) 2101
MvaI CCWGG 3 cut(s) 99, 317, 942
NcoI CCATGG 4 cut(s) 1204, 1498, 1902, 2046
NdeI CATATG 1 cut(s) 473
NdeII GATC 4 cut(s) 793, 815, 1377, 2179
NlaIV GGNNCC 3 cut(s) 81, 1366, 1710
NmuCI GTSAC 5 cut(s) 476, 562, 962, 1533, 2136
NsiI ATGCAT 1 cut(s) 467
NspI RCATGY 5 cut(s) 169, 469, 771, 1863, 2221
NspV TTCGAA 1 cut(s) 337
PaeI GCATGC 2 cut(s) 771, 2221
PaqCI CACCTGC 1 cut(s) 920
PceI AGGCCT 1 cut(s) 2026
PciI ACATGT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 1386
PctI GAATGC 1 cut(s) 2101
PdmI GAANNNNTTC 2 cut(s) 177, 696
PfeI GAWTC 4 cut(s) 706, 991, 1015, 1721
PkrI GCNGC 9 cut(s) 46, 49, 52, 70, 104, 119, 617, 1645, 1842
Ple19I CGATCG 1 cut(s) 796
PleI GAGTC 1 cut(s) 1862
PpsI GAGTC 1 cut(s) 1862
Ppu21I YACGTR 1 cut(s) 595
PscI ACATGT 1 cut(s) 165
PsiI TTATAA 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 221
Psp6I CCWGG 3 cut(s) 97, 315, 940
PspEI GGTNACC 2 cut(s) 1533, 2136
PspGI CCWGG 3 cut(s) 97, 315, 940
PspN4I GGNNCC 3 cut(s) 81, 1366, 1710
PspPI GGNCC 2 cut(s) 79, 798
PvuI CGATCG 1 cut(s) 796
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 5 cut(s) 597, 974, 1366, 2126, 2197
RsaNI GTAC 5 cut(s) 596, 973, 1365, 2125, 2196
RseI CAYNNNNRTG 3 cut(s) 14, 1428, 1632
SaqAI TTAA 6 cut(s) 452, 1161, 1197, 1392, 1919, 2009
SatI GCNGC 9 cut(s) 45, 48, 51, 69, 103, 118, 616, 1644, 1841
Sau3AI GATC 4 cut(s) 793, 815, 1377, 2179
Sau96I GGNCC 2 cut(s) 79, 798
ScaI AGTACT 1 cut(s) 2126
SchI GAGTC 1 cut(s) 1863
ScrFI CCNGG 3 cut(s) 99, 317, 942
SduI GDGCHC 2 cut(s) 1588, 1746
SfaNI GCATC 8 cut(s) 264, 452, 866, 1896, 1927, 2089, 2155, 2226
SfuI TTCGAA 1 cut(s) 337
SinI GGWCC 2 cut(s) 79, 798
SmiMI CAYNNNNRTG 3 cut(s) 14, 1428, 1632
SmlI CTYRAG 3 cut(s) 87, 1136, 1196
SmoI CTYRAG 3 cut(s) 87, 1136, 1196
SnaBI TACGTA 1 cut(s) 595
SpeI ACTAGT 1 cut(s) 1477
SphI GCATGC 2 cut(s) 771, 2221
SseBI AGGCCT 1 cut(s) 2026
SsiI CCGC 8 cut(s) 44, 50, 77, 83, 117, 201, 284, 459
StuI AGGCCT 1 cut(s) 2026
StyD4I CCNGG 3 cut(s) 97, 315, 940
StyI CCWWGG 5 cut(s) 1204, 1498, 1819, 1902, 2046
TaiI ACGT 5 cut(s) 224, 336, 597, 929, 1980
TaqI TCGA 7 cut(s) 337, 495, 792, 888, 1370, 1380, 1630
TaqII GACCGA 1 cut(s) 828
TatI WGTACW 1 cut(s) 2124
TauI GCSGC 3 cut(s) 47, 53, 120
TfiI GAWTC 4 cut(s) 706, 991, 1015, 1721
Tru1I TTAA 6 cut(s) 452, 1161, 1197, 1392, 1919, 2009
Tru9I TTAA 6 cut(s) 452, 1161, 1197, 1392, 1919, 2009
TscAI CASTG 7 cut(s) 112, 119, 490, 565, 573, 1473, 1545
TseFI GTSAC 5 cut(s) 476, 562, 962, 1533, 2136
TseI GCWGC 6 cut(s) 47, 68, 102, 615, 1643, 1840
Tsp45I GTSAC 5 cut(s) 476, 562, 962, 1533, 2136
TspGWI ACGGA 3 cut(s) 129, 176, 2073
TspRI CASTG 7 cut(s) 112, 119, 490, 565, 573, 1473, 1545
Vha464I CTTAAG 1 cut(s) 1196
VpaK11BI GGWCC 2 cut(s) 79, 798
XapI RAATTY 5 cut(s) 934, 1098, 1926, 2185, 2223
XceI RCATGY 5 cut(s) 169, 469, 771, 1863, 2221
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 1482
XmnI GAANNNNTTC 2 cut(s) 177, 696
ZrmI AGTACT 1 cut(s) 2126
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.