FvH4_3g10350
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000066
Physical Location & Seq
Reverse (-)
6054429 .. 6057350
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10350.t1

Sequence Viewer

Length: 2364 bp
ATGGCCTTAATACATGGTAGGATGCAAATGCTTATTATCCAGCTCTCTTTGTTAACGGTGGCAGTAACCCTAGCATCTTCTCAAGCGCCAAGGCCTGCAACCTGCTCCGACCGCTGCGGTGATGTCGAAATCCCATATCCATTCGGCATAGAGCCTAGCTGTTACATAGAGGTGCCGGAACAAGATGAACAGCAATTCAAGGTCACCTGTGACCACGCCACCACGCCACCGTTACTCAAGTTCTTGAACGGTGATATCCTCAACCAAAGCATTACTAACATTTCTGTAGGTGAGAGTGAGATGCAAGTAATGCTGCCCACATCCCGGAACTGCTACACCAACGGTTCCTACGACGATTCTTTGTACAGAAACAGTGAGCTCATCCTCCCTTCTGGTTACACTATCTCTGATAAGAACAAGGTTTATATCATTGGATGTAACAAAATAGCACTATACCAAGGTTTTGTTACCCAAGTCGAGCCAGAGCGAACAGAAATCGAGAAGCTGGGGACAACCGGGGTGAGCTTGTGCCAAGATCTACTCGGAGCGTTGTCCAACAATTGCAGTGGCGTCGGGTGTACCCAAAGGACCATCATAAGTGGACTTCACAGTATTAACTTGGATGTGTGGACAATCGGTACTGGCCTTGGAAGCACATCACAGTGGACACTAGACTACCCGTGCAGCTACGGTTTCATTGTGGATGATCGCAATTTCACCTTCGCCGGGAATGCAACTTTTAAAGAGATGGACAGCAGCACAAACGCGCCGGAGCTTCCGGTGACTGTTAACTGGGAAATTGGAAAGGACAACTGTGAAGTTGCCCTCAATAATCAAACTTCTTATGCATGCAAGGCCGCAAATACTGAATGTGTCAACGGCACTTCAGGTGGATATTTCTGCCGGTGCCAGAAAGGTTACCAAGGGAACCCTTACGTCCTTGATGGTTGCGAAGATGTTAATGAGTGTACTAATTCGACCATCTGCCATCCTACTTCAACATGCGAAAATTTAGTAGGAAGTTATACTTGTAAATGTCCCAAGGGCCAAACAAATGACGACAATAACAACAGTCCTTGTGTCAAAATCATCGGAAAACCAAAGAATACTTCCCTCCAAATTTCACTGGGTGTCTGTTTGAGCTTTCTAGTCGTATTGATTATAACATTTTGGATATACTGCGGAATGAAAAGAAGAAAGTTCAAGCAACTCAAAGAGAAGTACTTCAAAGACAATGGTGGCTTCTTGTTACAACAAAAATTGGAGAATTTTGACGGACCTCAAGCAGCCAAAATCTTTACAAGAGAAGAGCTTAAGAAGGCCACAAACAACTTCGATGACAGCGGAAAAATTGGCGAAGGAGGCTACGGATTTGTTTACAAAGGAACATTGACGGATAGAAAGGAGGTTGCCATAAAGGTGTCGAAGAGTAATGCCCCAATGACCCAAAGTAATCAGTTCATCAATGAGGTGATTGTTCTTTCACAAATCAACCATAGAAATGTGGTGAGGCTCCTAGGTTGTTGCTTAGAGACTCAAACTCCTTTGTTAGTTTACGAGTTTGTTAGCAATGGCACACTTTATGAGCACATTCATAAGAAGAATGGCAAGGGTCCGCTTTCTTTTGGGTTACGAATGAAGATAGCAACAGAAACTGCAGGATCCCTATCATACTTGCACTACTCCACTTCCATGCAAATCGTGCACCGAGATGTGAAAGCAACCAATATACTATTGGATGAGAATTTTACAGCCAAAGTATCAGACTTTGGAGCTTCGAAATTGGTTCCTGAAGATCAAAATCAGCTGTCCACTTTAGTACAAGGAACGCTGGGTTACCTAGACCCTGAATATCTCCAGTCAAACACACTGACAGAGAAGAGTGATGTCTATAGCTTCGGCGTTGTTCTTGTCGAGCTTATAACGAGTCAAGTGGCAATTTCTCACAAGAAGCCTGAGGCAGAGAGAAACCTAGCGAACTGTTTTGTAATGTCAGTGGAAGAGGATCGCTTGGCTCAGATTCTTGATCATGAAATAATTAAAGAAGGAAGCTTTGAAATAGCTGAACGAGTAGCCCATCTCGCCAAAAGATGTTTAAGTTTGAAAGGAGGAGATAGGCCTACAATGAAAGAAGTAGCAATGGAGCTAGAGGCAATACTGGCTGTTATGGCAAAGCATCCAGGAGGAAAGCCCGACTCCTCCCCCAAAGAGACCGATTACTTGCTTGCAGCGTCACCTTCAAACGCTTACGTTTACGTTGTTGATGTTAGAAGTGATGAAGGTGAAGTCATAACCAGCATAGATTATGACCAGAGCATGCATAATCAATCCCAGATGATGAAGCCTTATGATGGTGGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

788

Amino Acids

86.83

Weight (kDa)

5.39

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 35 - 103 4.9e-09 Wall-associated receptor kinase galacturonan-binding
EGF_CA PF07645 319 - 355 9e-07 Calcium-binding EGF domain
Pkinase PF00069 447 - 712 3e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 450 - 716 1.9e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1163, 1922
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 2 cut(s) 172, 906
AccII CGCG 1 cut(s) 767
AciI CCGC 6 cut(s) 112, 117, 858, 1182, 1344, 1616
AclWI GGATC 3 cut(s) 1656, 1669, 2013
AcsI RAATTY 4 cut(s) 1009, 1119, 1267, 1744
AcuI CTGAAG 2 cut(s) 870, 1812
AcyI GRCGYC 1 cut(s) 570
AdeI CACNNNGTG 1 cut(s) 1130
AfaI GTAC 6 cut(s) 365, 580, 640, 970, 1223, 1821
AfiI CCNNNNNNNGG 3 cut(s) 324, 726, 2351
AflII CTTAAG 1 cut(s) 1313
AgsI TTSAA 8 cut(s) 199, 247, 999, 1204, 1228, 2057, 2104, 2241
AjnI CCWGG 1 cut(s) 2179
AjuI GAANNNNNNNTTGG 2 cut(s) 1093, 1125
Alw21I GWGCWC 3 cut(s) 381, 1590, 1707
Alw26I GTCTC 2 cut(s) 1526, 2204
Alw44I GTGCAC 1 cut(s) 1703
AlwI GGATC 3 cut(s) 1656, 1669, 2013
AlwNI CAGNNNCTG 1 cut(s) 1655
AoxI GGCC 7 cut(s) 3, 92, 643, 855, 1045, 1320, 2117
ApaLI GTGCAC 1 cut(s) 1703
ApeKI GCWGC 6 cut(s) 114, 313, 684, 756, 1286, 2228
ApoI RAATTY 4 cut(s) 1009, 1119, 1267, 1744
Asp700I GAANNNNTTC 1 cut(s) 1223
AspA2I CCTAGG 1 cut(s) 1516
AspLEI GCGC 2 cut(s) 88, 769
AspS9I GGNCC 4 cut(s) 588, 1045, 1277, 1613
AsuC2I CCSGG 3 cut(s) 325, 517, 727
AsuII TTCGAA 1 cut(s) 1778
AvaII GGWCC 3 cut(s) 588, 1277, 1613
AvrII CCTAGG 1 cut(s) 1516
AxyI CCTNAGG 1 cut(s) 1956
BaeGI GKGCMC 1 cut(s) 1707
BamHI GGATCC 1 cut(s) 1661
BanI GGYRCC 2 cut(s) 172, 906
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 3 cut(s) 381, 1590, 1707
BbvI GCAGC 6 cut(s) 101, 300, 696, 768, 1298, 2240
BccI CCATC 7 cut(s) 599, 742, 938, 989, 996, 2085, 2345
BceAI ACGGC 1 cut(s) 895
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BciT130I CCWGG 1 cut(s) 2181
BclI TGATCA 1 cut(s) 2026
BcnI CCSGG 3 cut(s) 325, 517, 727
BcoDI GTCTC 2 cut(s) 1526, 2204
BfaI CTAG 8 cut(s) 71, 156, 671, 1148, 1517, 1841, 1973, 2147
BfmI CTRYAG 3 cut(s) 285, 1656, 1891
BfoI RGCGCY 1 cut(s) 89
BfrI CTTAAG 1 cut(s) 1313
BfuAI ACCTGC 1 cut(s) 110
BglII AGATCT 1 cut(s) 535
BisI GCNGC 7 cut(s) 115, 314, 685, 757, 858, 1287, 2229
BlnI CCTAGG 1 cut(s) 1516
BlsI GCNGC 7 cut(s) 116, 315, 686, 758, 859, 1288, 2230
BmcAI AGTACT 1 cut(s) 1223
Bme1390I CCNGG 4 cut(s) 325, 517, 727, 2181
Bme18I GGWCC 3 cut(s) 588, 1277, 1613
BmgT120I GGNCC 4 cut(s) 588, 1045, 1277, 1613
BmiI GGNNCC 8 cut(s) 174, 346, 908, 929, 1514, 1614, 1663, 1788
BmrFI CCNGG 4 cut(s) 325, 517, 727, 2181
BmrI ACTGGG 2 cut(s) 802, 1136
BmsI GCATC 4 cut(s) 12, 83, 291, 2185
BmuI ACTGGG 2 cut(s) 802, 1136
BpmI CTGGAG 1 cut(s) 1841
Bpu14I TTCGAA 1 cut(s) 1778
BpuEI CTTGAG 3 cut(s) 66, 221, 1266
BpuMI CCSGG 3 cut(s) 325, 517, 727
BsaBI GATNNNNATC 2 cut(s) 1666, 1800
BsaHI GRCGYC 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 2204
BsaJI CCNNGG 7 cut(s) 89, 457, 516, 646, 922, 1041, 1516
BsaWI WCCGGW 1 cut(s) 778
BsaXI ACNNNNNCTCC 2 cut(s) 1525, 1555
Bsc4I CCNNNNNNNGG 3 cut(s) 324, 726, 2351
Bse118I RCCGGY 1 cut(s) 903
Bse1I ACTGG 5 cut(s) 646, 797, 1131, 1858, 2163
Bse21I CCTNAGG 1 cut(s) 1956
Bse3DI GCAATG 2 cut(s) 1576, 2145
Bse8I GATNNNNATC 2 cut(s) 1666, 1800
BseBI CCWGG 1 cut(s) 2181
BseDI CCNNGG 7 cut(s) 89, 457, 516, 646, 922, 1041, 1516
BseGI GGATG 9 cut(s) 27, 320, 381, 440, 628, 709, 988, 1744, 2176
BseJI GATNNNNATC 2 cut(s) 1666, 1800
BseLI CCNNNNNNNGG 3 cut(s) 324, 726, 2351
BseMI GCAATG 2 cut(s) 1576, 2145
BseMII CTCAG 2 cut(s) 1947, 2030
BseNI ACTGG 5 cut(s) 646, 797, 1131, 1858, 2163
BseRI GAGGAG 2 cut(s) 2124, 2188
BseSI GKGCMC 1 cut(s) 1707
BseXI GCAGC 6 cut(s) 101, 300, 696, 768, 1298, 2240
BseYI CCCAGC 2 cut(s) 505, 1831
BsgI GTGCAG 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 767
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 7 cut(s) 5, 94, 645, 857, 1047, 1322, 2119
BshNI GGYRCC 2 cut(s) 172, 906
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 3 cut(s) 381, 1590, 1707
BsiSI CCGG 7 cut(s) 176, 325, 516, 726, 770, 779, 904
BslFI GGGAC 2 cut(s) 523, 1023
BslI CCNNNNNNNGG 3 cut(s) 324, 726, 2351
BsmAI GTCTC 2 cut(s) 1526, 2204
BsmFI GGGAC 2 cut(s) 523, 1023
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 7 cut(s) 5, 94, 645, 857, 1047, 1322, 2119
Bso31I GGTCTC 1 cut(s) 2204
Bsp119I TTCGAA 1 cut(s) 1778
Bsp1286I GDGCHC 3 cut(s) 381, 1590, 1707
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 6 cut(s) 535, 706, 1661, 1795, 2005, 2026
BspACI CCGC 6 cut(s) 112, 117, 858, 1182, 1344, 1616
BspANI GGCC 7 cut(s) 5, 94, 645, 857, 1047, 1322, 2119
BspCNI CTCAG 2 cut(s) 1948, 2029
BspFNI CGCG 1 cut(s) 767
BspHI TCATGA 1 cut(s) 2029
BspLI GGNNCC 8 cut(s) 174, 346, 908, 929, 1514, 1614, 1663, 1788
BspMAI CTGCAG 1 cut(s) 1660
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 3 cut(s) 1656, 1669, 2013
BspQI GCTCTTC 1 cut(s) 1302
BspT104I TTCGAA 1 cut(s) 1778
BspT107I GGYRCC 2 cut(s) 172, 906
BspTI CTTAAG 1 cut(s) 1313
BspTNI GGTCTC 1 cut(s) 2204
BsrDI GCAATG 2 cut(s) 1576, 2145
BsrFI RCCGGY 1 cut(s) 903
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 5 cut(s) 646, 797, 1131, 1858, 2163
BssAI RCCGGY 1 cut(s) 903
BssECI CCNNGG 7 cut(s) 89, 457, 516, 646, 922, 1041, 1516
BssMI GATC 6 cut(s) 535, 706, 1661, 1795, 2005, 2026
BssNI GRCGYC 1 cut(s) 570
BssT1I CCWWGG 6 cut(s) 89, 457, 646, 922, 1041, 1516
Bst2UI CCWGG 1 cut(s) 2181
Bst6I CTCTTC 4 cut(s) 1302, 1421, 1874, 1995
BstACI GRCGYC 1 cut(s) 570
BstAFI CTTAAG 1 cut(s) 1313
BstAPI GCANNNNNTGC 2 cut(s) 310, 1702
BstAUI TGTACA 1 cut(s) 363
BstBI TTCGAA 1 cut(s) 1778
BstC8I GCNNGC 4 cut(s) 96, 850, 2226, 2318
BstDEI CTNAG 3 cut(s) 1528, 1956, 2016
BstEII GGTNACC 3 cut(s) 202, 917, 1835
BstF5I GGATG 9 cut(s) 27, 320, 381, 440, 628, 709, 988, 1744, 2176
BstFNI CGCG 1 cut(s) 767
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 2 cut(s) 88, 769
BstKTI GATC 6 cut(s) 538, 709, 1664, 1798, 2008, 2029
BstMAI GTCTC 2 cut(s) 1526, 2204
BstMBI GATC 6 cut(s) 535, 706, 1661, 1795, 2005, 2026
BstMCI CGRYCG 1 cut(s) 112
BstNI CCWGG 1 cut(s) 2181
BstNSI RCATGY 3 cut(s) 852, 1005, 2320
BstPI GGTNACC 3 cut(s) 202, 917, 1835
BstSCI CCNGG 4 cut(s) 323, 515, 725, 2179
BstSFI CTRYAG 3 cut(s) 285, 1656, 1891
BstSLI GKGCMC 1 cut(s) 1707
BstUI CGCG 1 cut(s) 767
BstV1I GCAGC 6 cut(s) 101, 300, 696, 768, 1298, 2240
BstX2I RGATCY 2 cut(s) 535, 1661
BstYI RGATCY 2 cut(s) 535, 1661
Bsu36I CCTNAGG 1 cut(s) 1956
BsuRI GGCC 7 cut(s) 5, 94, 645, 857, 1047, 1322, 2119
BtsCI GGATG 9 cut(s) 27, 320, 381, 440, 628, 709, 988, 1744, 2176
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 6 cut(s) 379, 571, 668, 1124, 1868, 2001
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 4 cut(s) 96, 850, 2226, 2318
CaiI CAGNNNCTG 1 cut(s) 1655
CciI TCATGA 1 cut(s) 2029
CfoI GCGC 2 cut(s) 88, 769
Cfr10I RCCGGY 1 cut(s) 903
Cfr13I GGNCC 4 cut(s) 588, 1045, 1277, 1613
CseI GACGC 2 cut(s) 559, 2220
Csp6I GTAC 6 cut(s) 364, 579, 639, 969, 1222, 1820
CspCI CAANNNNNGTGG 2 cut(s) 547, 582
CviAII CATG 6 cut(s) 14, 849, 1002, 1693, 2030, 2317
CviQI GTAC 6 cut(s) 364, 579, 639, 969, 1222, 1820
DdeI CTNAG 3 cut(s) 1528, 1956, 2016
DpnI GATC 6 cut(s) 537, 708, 1663, 1797, 2007, 2028
DpnII GATC 6 cut(s) 535, 706, 1661, 1795, 2005, 2026
DraI TTTAAA 1 cut(s) 742
DraIII CACNNNGTG 1 cut(s) 1130
Eam1104I CTCTTC 4 cut(s) 1302, 1421, 1874, 1995
EarI CTCTTC 4 cut(s) 1302, 1421, 1874, 1995
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 6 cut(s) 89, 457, 646, 922, 1041, 1516
Eco147I AGGCCT 2 cut(s) 94, 2119
Eco24I GRGCYC 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 2204
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 3 cut(s) 588, 1277, 1613
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 2 cut(s) 870, 1812
Eco81I CCTNAGG 1 cut(s) 1956
Eco91I GGTNACC 3 cut(s) 202, 917, 1835
EcoICRI GAGCTC 1 cut(s) 379
EcoO65I GGTNACC 3 cut(s) 202, 917, 1835
EcoRII CCWGG 1 cut(s) 2179
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 6 cut(s) 89, 457, 646, 922, 1041, 1516
EcoT22I ATGCAT 2 cut(s) 850, 2322
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 6 cut(s) 89, 457, 646, 922, 1041, 1516
FaeI CATG 6 cut(s) 17, 852, 1005, 1696, 2033, 2320
FalI AAGNNNNNCTT 2 cut(s) 1012, 1044
FaqI GGGAC 2 cut(s) 523, 1023
FatI CATG 6 cut(s) 13, 848, 1001, 1692, 2029, 2316
FbaI TGATCA 1 cut(s) 2026
Fnu4HI GCNGC 7 cut(s) 115, 314, 685, 757, 858, 1287, 2229
FokI GGATG 9 cut(s) 34, 307, 368, 447, 635, 716, 975, 1751, 2163
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 7 cut(s) 115, 314, 685, 757, 858, 1287, 2229
FspBI CTAG 8 cut(s) 71, 156, 671, 1148, 1517, 1841, 1973, 2147
GlaI GCGC 2 cut(s) 87, 768
GluI GCNGC 7 cut(s) 115, 314, 685, 757, 858, 1287, 2229
GsaI CCCAGC 2 cut(s) 509, 1835
GsuI CTGGAG 1 cut(s) 1841
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 7 cut(s) 5, 94, 645, 857, 1047, 1322, 2119
HapII CCGG 7 cut(s) 176, 325, 516, 726, 770, 779, 904
HgaI GACGC 2 cut(s) 559, 2220
HhaI GCGC 2 cut(s) 88, 769
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 6 cut(s) 17, 852, 1005, 1696, 2033, 2320
Hin6I GCGC 2 cut(s) 86, 767
HinP1I GCGC 2 cut(s) 86, 767
HincII GTYRAC 3 cut(s) 54, 790, 877
HindII GTYRAC 3 cut(s) 54, 790, 877
HindIII AAGCTT 1 cut(s) 2050
HinfI GANTC 5 cut(s) 356, 1534, 1927, 2020, 2195
HpaI GTTAAC 2 cut(s) 54, 790
HpaII CCGG 7 cut(s) 176, 325, 516, 726, 770, 779, 904
Hpy188I TCNGA 6 cut(s) 109, 409, 545, 1094, 1765, 2019
Hpy188III TCNNGA 5 cut(s) 244, 499, 1790, 2024, 2030
Hpy99I CGWCG 2 cut(s) 356, 575
HpyAV CCTTC 7 cut(s) 399, 730, 1312, 1352, 2039, 2247, 2273
HpyCH4IV ACGT 3 cut(s) 936, 2250, 2256
HpyF3I CTNAG 3 cut(s) 1528, 1956, 2016
HpySE526I ACGT 3 cut(s) 936, 2250, 2256
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 6 cut(s) 17, 852, 1005, 1696, 2033, 2320
HspAI GCGC 2 cut(s) 86, 767
Ksp22I TGATCA 1 cut(s) 2026
KspAI GTTAAC 2 cut(s) 54, 790
Kzo9I GATC 6 cut(s) 535, 706, 1661, 1795, 2005, 2026
LguI GCTCTTC 1 cut(s) 1302
LmnI GCTCC 6 cut(s) 110, 545, 772, 1518, 1772, 2143
Lsp1109I GCAGC 6 cut(s) 101, 300, 696, 768, 1298, 2240
LweI GCATC 4 cut(s) 12, 83, 291, 2185
MaeI CTAG 8 cut(s) 71, 156, 671, 1148, 1517, 1841, 1973, 2147
MaeII ACGT 3 cut(s) 936, 2250, 2256
MalI GATC 6 cut(s) 537, 708, 1663, 1797, 2007, 2028
MboI GATC 6 cut(s) 535, 706, 1661, 1795, 2005, 2026
MfeI CAATTG 1 cut(s) 559
MflI RGATCY 2 cut(s) 535, 1661
MhlI GDGCHC 3 cut(s) 381, 1590, 1707
MlyI GAGTC 3 cut(s) 1528, 1936, 2189
MmeI TCCRAC 2 cut(s) 132, 579
Mph1103I ATGCAT 2 cut(s) 850, 2322
MroXI GAANNNNTTC 1 cut(s) 1223
MseI TTAA 9 cut(s) 8, 53, 615, 741, 789, 960, 1314, 2040, 2096
MslI CAYNNNNRTG 6 cut(s) 170, 661, 1418, 1500, 1691, 1710
MspA1I CMGCKG 3 cut(s) 114, 1344, 1807
MspCI CTTAAG 1 cut(s) 1313
MspI CCGG 7 cut(s) 176, 325, 516, 726, 770, 779, 904
MspR9I CCNGG 4 cut(s) 325, 517, 727, 2181
MunI CAATTG 1 cut(s) 559
Mva1269I GAATGC 1 cut(s) 736
MvaI CCWGG 1 cut(s) 2181
MvnI CGCG 1 cut(s) 767
NciI CCSGG 3 cut(s) 325, 517, 727
NdeII GATC 6 cut(s) 535, 706, 1661, 1795, 2005, 2026
NlaIII CATG 6 cut(s) 17, 852, 1005, 1696, 2033, 2320
NlaIV GGNNCC 8 cut(s) 174, 346, 908, 929, 1514, 1614, 1663, 1788
NmuCI GTSAC 4 cut(s) 202, 209, 781, 2232
NsiI ATGCAT 2 cut(s) 850, 2322
NspI RCATGY 3 cut(s) 852, 1005, 2320
NspV TTCGAA 1 cut(s) 1778
PaeI GCATGC 2 cut(s) 852, 2320
PagI TCATGA 1 cut(s) 2029
PceI AGGCCT 2 cut(s) 94, 2119
PciSI GCTCTTC 1 cut(s) 1302
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 1223
PfeI GAWTC 2 cut(s) 356, 2020
PfoI TCCNGGA 2 cut(s) 323, 2179
PkrI GCNGC 7 cut(s) 116, 315, 686, 758, 859, 1288, 2230
PleI GAGTC 3 cut(s) 1528, 1935, 2189
PpsI GAGTC 3 cut(s) 1528, 1935, 2189
PsiI TTATAA 2 cut(s) 1163, 1922
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 2179
PspEI GGTNACC 3 cut(s) 202, 917, 1835
PspFI CCCAGC 2 cut(s) 505, 1831
PspGI CCWGG 1 cut(s) 2179
PspN4I GGNNCC 8 cut(s) 174, 346, 908, 929, 1514, 1614, 1663, 1788
PspPI GGNCC 4 cut(s) 588, 1045, 1277, 1613
PstI CTGCAG 1 cut(s) 1660
PstNI CAGNNNCTG 1 cut(s) 1655
PsuI RGATCY 2 cut(s) 535, 1661
PvuII CAGCTG 1 cut(s) 1807
RsaI GTAC 6 cut(s) 365, 580, 640, 970, 1223, 1821
RsaNI GTAC 6 cut(s) 364, 579, 639, 969, 1222, 1820
RseI CAYNNNNRTG 6 cut(s) 170, 661, 1418, 1500, 1691, 1710
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 1302
SaqAI TTAA 9 cut(s) 8, 53, 615, 741, 789, 960, 1314, 2040, 2096
SatI GCNGC 7 cut(s) 115, 314, 685, 757, 858, 1287, 2229
Sau3AI GATC 6 cut(s) 535, 706, 1661, 1795, 2005, 2026
Sau96I GGNCC 4 cut(s) 588, 1045, 1277, 1613
ScaI AGTACT 1 cut(s) 1223
SchI GAGTC 3 cut(s) 1528, 1936, 2189
ScrFI CCNGG 4 cut(s) 325, 517, 727, 2181
SduI GDGCHC 3 cut(s) 381, 1590, 1707
SfaNI GCATC 4 cut(s) 12, 83, 291, 2185
SfcI CTRYAG 3 cut(s) 285, 1656, 1891
SfuI TTCGAA 1 cut(s) 1778
SinI GGWCC 3 cut(s) 588, 1277, 1613
SmiMI CAYNNNNRTG 6 cut(s) 170, 661, 1418, 1500, 1691, 1710
SmlI CTYRAG 4 cut(s) 81, 236, 1281, 1313
SmoI CTYRAG 4 cut(s) 81, 236, 1281, 1313
SphI GCATGC 2 cut(s) 852, 2320
SseBI AGGCCT 2 cut(s) 94, 2119
SsiI CCGC 6 cut(s) 112, 117, 858, 1182, 1344, 1616
SspMI CTAG 8 cut(s) 71, 156, 671, 1148, 1517, 1841, 1973, 2147
SstI GAGCTC 1 cut(s) 381
StuI AGGCCT 2 cut(s) 94, 2119
StyD4I CCNGG 4 cut(s) 323, 515, 725, 2179
StyI CCWWGG 6 cut(s) 89, 457, 646, 922, 1041, 1516
TaiI ACGT 3 cut(s) 939, 2253, 2259
TaqI TCGA 8 cut(s) 126, 477, 498, 977, 1335, 1424, 1778, 1914
TaqII GACCGA 1 cut(s) 2228
TatI WGTACW 4 cut(s) 363, 968, 1221, 1819
TauI GCSGC 1 cut(s) 860
TfiI GAWTC 2 cut(s) 356, 2020
Tru1I TTAA 9 cut(s) 8, 53, 615, 741, 789, 960, 1314, 2040, 2096
Tru9I TTAA 9 cut(s) 8, 53, 615, 741, 789, 960, 1314, 2040, 2096
TscAI CASTG 6 cut(s) 379, 571, 668, 1131, 1875, 2001
TseFI GTSAC 4 cut(s) 202, 209, 781, 2232
TseI GCWGC 6 cut(s) 114, 313, 684, 756, 1286, 2228
Tsp45I GTSAC 4 cut(s) 202, 209, 781, 2232
TspGWI ACGGA 3 cut(s) 1290, 1383, 1409
TspRI CASTG 6 cut(s) 379, 571, 668, 1131, 1875, 2001
Vha464I CTTAAG 1 cut(s) 1313
VneI GTGCAC 1 cut(s) 1703
VpaK11BI GGWCC 3 cut(s) 588, 1277, 1613
XapI RAATTY 4 cut(s) 1009, 1119, 1267, 1744
XceI RCATGY 3 cut(s) 852, 1005, 2320
XcmI CCANNNNNNNNNTGG 1 cut(s) 1732
XmaJI CCTAGG 1 cut(s) 1516
XmnI GAANNNNTTC 1 cut(s) 1223
XspI CTAG 8 cut(s) 71, 156, 671, 1148, 1517, 1841, 1973, 2147
ZrmI AGTACT 1 cut(s) 1223
Zsp2I ATGCAT 2 cut(s) 850, 2322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.