FvH4_3g10390
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000066
Physical Location & Seq
Reverse (-)
6079961 .. 6082584
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10390.t1

Sequence Viewer

Length: 2223 bp
ATGGCCTTAATACATGGTAGGATGCAAATGCTTATTATCCAACTCTCTTTGTTAATGGTGGCAGTAACCCTAGCATCTTCTCAAGCGCCAAGGCCTGCAACCTGCTCCGACCGCTGCGGTGATGTCGAAATCCCATATCCATTCGGCATAGAGCCTAGCTGTTACATGGAGGTGCCGGAACAAGATGAACAGCAATATTCAAGGTCACCTGTGACCAGGCCACCACGCCACCGTGAGAGTAAGATGCAAGTAATGCTGCCCACATCCCGGAACTGCTACACCGACGGTTACTACAACGATTCTTTGTACAGAAACAGTGAGCTCATCCTCCCCTCTGTCGAGCCAGAGCGAACAGAAATCGAGAAGCTGGGGACAACCGGCGTGAGCTTGTGCCAAGATCTACTCGGAGCGTTGTCCAACAATTGCAGTGGCGTCGGGTGTACCCAAAGGACCATCATAAGTGGACTTCACAGTATTAACTTGGATGTGTGGACAATCGGTACAGGCCTTGGAAGCACATCACAGTGGGCACTAGACTACCCGTGCAGCTACGGTTTCATTGTGGATGATCGCAATTTCACCTTCGCCGGGAATGCAACTTTTAAAGAGATGGACAGCAGCACAAACTCGCCGGAGCTTCCGGTGGCTGTTAACTGGGAAATTGAAAAGGACAACTGTGAAGTTGCCCTCAATAATCAAACTTCTTATGCATGCAAGGCCGCAAATACTGAATGTGTCAACGGCACTTCAGGTGGATATTTCTGCCGGTGCCAGAAAGGTTACCAAGGGAACCCTTACGTCCTTGGTGGTTGCGAAGATGTTAACGAGTGTACTAATTCGACCATCTGCCATCCTACTTCAACATGCAAAAATTTAGTAGGAAGTTACACTTGTAAATGTCCCAAGGGGCGCCAAACAAATGACGACAATAACAACAATCCTTGTGTCAAAATCATCGGAAAACCAAAGAATACTTCCCTCCAAATTTCACTGGGTGTCTGTTTGAGCTTCCTTGTCGTATTGATTATAACATTTTGGATATACTGCGTAATGAAAAGAAGAAAGTTCAAGCAACTCAAAGAGAAGTACTTCAAAGACAATGGTGGCTTCTTGTTACAACAAAAATTGGAGAATTTTGACGGACCTCAAGCAGCCAAGATCTTTACAAGAGAAGAGCTTAACAAGGCCACAAACAACTTCGATGACAGCGGAAAAATTGGCGAAGGTGGCTACGGATTTGTTTACAAAGGAACATTGCCGGATAGAAAGGAGGTTGCCATAAAGGTGTCGAAGAGTAATGCCCCAATGACCCAAAGTAATCAGTTCATCAATGAGGTGATTGTTCTTTCACAAATCAACCATAGAAATGTGGTGAGGCTCCTAGGTTGTTGCTTAGAGACTCAAACTCCTTTGTTAGTTTACGAGTTTGTTAGCAATGGCACACTTTATGAGCACATTCATAAGAAGAATGGCAAGGATCTGCTTTCTTTTGGGTTACGAATGAAGATAGCAGCAGAAACAGCAGGATCCCTAGCATACTTGCACTACTCCACATCCATGCAAATCGTGCACCGAGATGTGAAGGCAACTAACATCCTACTGGATGAGAATTTCACTGCCAAAGTATCAGATTTTGGAGCTTCAAAATTGGTTCCCGAAGATCAAAATCAACTGTCTACTTTAGTGCAAGGCACGCTAGGGTACTTGGACCCTGAATATCTTCAATCAAACACACTGACGAAGAAAAGTGATGTCTATAGTTTCGGCGTTGTTCTTGTCGAGCTTATAACGAGTCAAGTGGCAATTTCTCACAAGAAGCCTGAGGCAGAGAGAAACCTAGCGAACTGTTTTGTAACGTCAGTGGAAGAGAATCGCTTGGCTCATATTCTTGATCTTGAAATTATCAAGGAGGGAAGCTTTGAAATAGCTGAACAAGTAGCCCATCTCGCCAAAAGATGTTTAAGTTTGAAAGGAGGAGATAGGCCTACCATGAAAGAAGTAGCAATGGAGCTAGAGGCAATACTGGCTGTTATGTCAAAGCATCCAGGAGGAAAGCCTGACTCCTCCCCCAAAGAGACCGATTACTTGCTTGCAGCGTCACCTTCAAACGCTTGCGTTGTTGATGTTAGAAGTGATGAAGGTGAAGTCATAACCAGCATAGATTATGACCAGAGCATGCAGATTCAATCCCAGATGATGAAGCCTCATGATGGTGGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

741

Amino Acids

81.88

Weight (kDa)

5.8

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EGF_CA PF07645 273 - 311 7.5e-07 Calcium-binding EGF domain
Pkinase PF00069 402 - 667 6e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 405 - 671 1.6e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1028, 1787
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 3 cut(s) 172, 768, 909
AccI GTMKAC 1 cut(s) 1676
AciI CCGC 4 cut(s) 112, 117, 720, 1209
AclWI GGATC 3 cut(s) 1485, 1521, 1534
AcsI RAATTY 4 cut(s) 871, 984, 1132, 1609
AcuI CTGAAG 1 cut(s) 732
AcyI GRCGYC 2 cut(s) 432, 910
AdeI CACNNNGTG 1 cut(s) 995
AfaI GTAC 6 cut(s) 308, 442, 502, 832, 1088, 1703
AfiI CCNNNNNNNGG 3 cut(s) 267, 588, 2210
AjnI CCWGG 2 cut(s) 215, 2044
AjuI GAANNNNNNNTTGG 2 cut(s) 958, 990
Alw21I GWGCWC 3 cut(s) 324, 1455, 1572
Alw26I GTCTC 2 cut(s) 1391, 2069
Alw44I GTGCAC 1 cut(s) 1568
AlwI GGATC 3 cut(s) 1485, 1521, 1534
AoxI GGCC 7 cut(s) 3, 92, 218, 505, 717, 1185, 1982
ApaLI GTGCAC 1 cut(s) 1568
ApeKI GCWGC 7 cut(s) 114, 256, 546, 618, 1151, 1511, 2093
ApoI RAATTY 4 cut(s) 871, 984, 1132, 1609
Asp700I GAANNNNTTC 2 cut(s) 1088, 1719
AspA2I CCTAGG 1 cut(s) 1381
AspLEI GCGC 2 cut(s) 88, 912
AspS9I GGNCC 3 cut(s) 450, 1142, 1708
AsuC2I CCSGG 2 cut(s) 268, 589
AsuHPI GGTGA 7 cut(s) 131, 198, 571, 1348, 1384, 2091, 2153
AvaII GGWCC 3 cut(s) 450, 1142, 1708
AvrII CCTAGG 1 cut(s) 1381
AxyI CCTNAGG 1 cut(s) 1821
BaeGI GKGCMC 2 cut(s) 532, 1572
BamHI GGATCC 1 cut(s) 1526
BanI GGYRCC 3 cut(s) 172, 768, 909
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 3 cut(s) 324, 1455, 1572
BbvI GCAGC 7 cut(s) 101, 243, 558, 630, 1163, 1523, 2105
BccI CCATC 6 cut(s) 461, 604, 851, 858, 1950, 2204
BceAI ACGGC 1 cut(s) 757
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BciT130I CCWGG 2 cut(s) 217, 2046
BcnI CCSGG 2 cut(s) 268, 589
BcoDI GTCTC 2 cut(s) 1391, 2069
BfaI CTAG 8 cut(s) 71, 156, 533, 1382, 1532, 1697, 1838, 2012
BfmI CTRYAG 1 cut(s) 1756
BfoI RGCGCY 2 cut(s) 89, 913
BfuAI ACCTGC 1 cut(s) 110
BglII AGATCT 2 cut(s) 397, 1158
BisI GCNGC 8 cut(s) 115, 257, 547, 619, 720, 1152, 1512, 2094
BlnI CCTAGG 1 cut(s) 1381
BlsI GCNGC 8 cut(s) 116, 258, 548, 620, 721, 1153, 1513, 2095
BmcAI AGTACT 1 cut(s) 1088
Bme1390I CCNGG 4 cut(s) 217, 268, 589, 2046
Bme18I GGWCC 3 cut(s) 450, 1142, 1708
BmgT120I GGNCC 3 cut(s) 450, 1142, 1708
BmiI GGNNCC 8 cut(s) 174, 770, 791, 911, 1379, 1528, 1653, 1710
BmrFI CCNGG 4 cut(s) 217, 268, 589, 2046
BmrI ACTGGG 2 cut(s) 664, 1001
BmsI GCATC 4 cut(s) 12, 83, 234, 2050
BmuI ACTGGG 2 cut(s) 664, 1001
BpuEI CTTGAG 2 cut(s) 66, 1131
BpuMI CCSGG 2 cut(s) 268, 589
BsaBI GATNNNNATC 1 cut(s) 1665
BsaHI GRCGYC 2 cut(s) 432, 910
BsaI GGTCTC 1 cut(s) 2069
BsaJI CCNNGG 6 cut(s) 89, 508, 784, 802, 903, 1381
BsaWI WCCGGW 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 1390, 1420
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 588, 2210
Bse118I RCCGGY 2 cut(s) 377, 765
Bse1I ACTGG 4 cut(s) 659, 996, 1605, 2028
Bse21I CCTNAGG 1 cut(s) 1821
Bse3DI GCAATG 3 cut(s) 1253, 1441, 2010
Bse8I GATNNNNATC 1 cut(s) 1665
BseBI CCWGG 2 cut(s) 217, 2046
BseDI CCNNGG 6 cut(s) 89, 508, 784, 802, 903, 1381
BseJI GATNNNNATC 1 cut(s) 1665
BseLI CCNNNNNNNGG 3 cut(s) 267, 588, 2210
BseMI GCAATG 3 cut(s) 1253, 1441, 2010
BseMII CTCAG 1 cut(s) 1812
BseNI ACTGG 4 cut(s) 659, 996, 1605, 2028
BseRI GAGGAG 2 cut(s) 1989, 2053
BseSI GKGCMC 2 cut(s) 532, 1572
BseXI GCAGC 7 cut(s) 101, 243, 558, 630, 1163, 1523, 2105
BseYI CCCAGC 1 cut(s) 367
BsgI GTGCAG 1 cut(s) 565
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 7 cut(s) 5, 94, 220, 507, 719, 1187, 1984
BshNI GGYRCC 3 cut(s) 172, 768, 909
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 3 cut(s) 324, 1455, 1572
BsiSI CCGG 8 cut(s) 176, 268, 378, 588, 632, 641, 766, 1259
BslFI GGGAC 2 cut(s) 385, 885
BslI CCNNNNNNNGG 3 cut(s) 267, 588, 2210
BsmAI GTCTC 2 cut(s) 1391, 2069
BsmFI GGGAC 2 cut(s) 385, 885
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 7 cut(s) 5, 94, 220, 507, 719, 1187, 1984
Bso31I GGTCTC 1 cut(s) 2069
Bsp1286I GDGCHC 4 cut(s) 324, 532, 1455, 1572
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 7 cut(s) 397, 568, 1158, 1477, 1526, 1660, 1891
BspACI CCGC 4 cut(s) 112, 117, 720, 1209
BspANI GGCC 7 cut(s) 5, 94, 220, 507, 719, 1187, 1984
BspCNI CTCAG 1 cut(s) 1813
BspHI TCATGA 1 cut(s) 2206
BspLI GGNNCC 8 cut(s) 174, 770, 791, 911, 1379, 1528, 1653, 1710
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 3 cut(s) 1485, 1521, 1534
BspQI GCTCTTC 1 cut(s) 1167
BspT107I GGYRCC 3 cut(s) 172, 768, 909
BspTNI GGTCTC 1 cut(s) 2069
BsrDI GCAATG 3 cut(s) 1253, 1441, 2010
BsrFI RCCGGY 2 cut(s) 377, 765
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 4 cut(s) 659, 996, 1605, 2028
BssAI RCCGGY 2 cut(s) 377, 765
BssECI CCNNGG 6 cut(s) 89, 508, 784, 802, 903, 1381
BssMI GATC 7 cut(s) 397, 568, 1158, 1477, 1526, 1660, 1891
BssNI GRCGYC 2 cut(s) 432, 910
BssT1I CCWWGG 6 cut(s) 89, 508, 784, 802, 903, 1381
Bst2UI CCWGG 2 cut(s) 217, 2046
Bst4CI ACNGT 9 cut(s) 233, 287, 317, 473, 525, 554, 677, 1674, 1847
Bst6I CTCTTC 3 cut(s) 1167, 1286, 1860
BstACI GRCGYC 2 cut(s) 432, 910
BstAPI GCANNNNNTGC 2 cut(s) 253, 1567
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 6 cut(s) 96, 712, 1694, 2091, 2113, 2177
BstDEI CTNAG 2 cut(s) 1393, 1821
BstEII GGTNACC 2 cut(s) 204, 779
BstH2I RGCGCY 2 cut(s) 89, 913
BstHHI GCGC 2 cut(s) 88, 912
BstKTI GATC 7 cut(s) 400, 571, 1161, 1480, 1529, 1663, 1894
BstMAI GTCTC 2 cut(s) 1391, 2069
BstMBI GATC 7 cut(s) 397, 568, 1158, 1477, 1526, 1660, 1891
BstMCI CGRYCG 1 cut(s) 112
BstNI CCWGG 2 cut(s) 217, 2046
BstNSI RCATGY 3 cut(s) 714, 867, 2179
BstPI GGTNACC 2 cut(s) 204, 779
BstSCI CCNGG 4 cut(s) 215, 266, 587, 2044
BstSFI CTRYAG 1 cut(s) 1756
BstSLI GKGCMC 2 cut(s) 532, 1572
BstV1I GCAGC 7 cut(s) 101, 243, 558, 630, 1163, 1523, 2105
BstX2I RGATCY 4 cut(s) 397, 1158, 1477, 1526
BstYI RGATCY 4 cut(s) 397, 1158, 1477, 1526
Bsu36I CCTNAGG 1 cut(s) 1821
BsuRI GGCC 7 cut(s) 5, 94, 220, 507, 719, 1187, 1984
BtsI GCAGTG 2 cut(s) 433, 1614
BtsIMutI CAGTG 7 cut(s) 322, 433, 530, 989, 1614, 1733, 1866
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 6 cut(s) 96, 712, 1694, 2091, 2113, 2177
CciI TCATGA 1 cut(s) 2206
CfoI GCGC 2 cut(s) 88, 912
Cfr10I RCCGGY 2 cut(s) 377, 765
Cfr13I GGNCC 3 cut(s) 450, 1142, 1708
CseI GACGC 2 cut(s) 421, 2085
Csp6I GTAC 6 cut(s) 307, 441, 501, 831, 1087, 1702
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 8 cut(s) 14, 166, 711, 864, 1558, 1990, 2176, 2207
CviQI GTAC 6 cut(s) 307, 441, 501, 831, 1087, 1702
DdeI CTNAG 2 cut(s) 1393, 1821
DinI GGCGCC 1 cut(s) 911
DpnI GATC 7 cut(s) 399, 570, 1160, 1479, 1528, 1662, 1893
DpnII GATC 7 cut(s) 397, 568, 1158, 1477, 1526, 1660, 1891
DraI TTTAAA 1 cut(s) 604
DraIII CACNNNGTG 1 cut(s) 995
Eam1104I CTCTTC 3 cut(s) 1167, 1286, 1860
EarI CTCTTC 3 cut(s) 1167, 1286, 1860
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 6 cut(s) 89, 508, 784, 802, 903, 1381
Eco147I AGGCCT 3 cut(s) 94, 507, 1984
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 2069
Eco47I GGWCC 3 cut(s) 450, 1142, 1708
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 732
Eco81I CCTNAGG 1 cut(s) 1821
Eco91I GGTNACC 2 cut(s) 204, 779
EcoICRI GAGCTC 1 cut(s) 322
EcoO65I GGTNACC 2 cut(s) 204, 779
EcoRII CCWGG 2 cut(s) 215, 2044
EcoT14I CCWWGG 6 cut(s) 89, 508, 784, 802, 903, 1381
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 911
EheI GGCGCC 1 cut(s) 911
ErhI CCWWGG 6 cut(s) 89, 508, 784, 802, 903, 1381
FaeI CATG 8 cut(s) 17, 169, 714, 867, 1561, 1993, 2179, 2210
FalI AAGNNNNNCTT 2 cut(s) 874, 906
FaqI GGGAC 2 cut(s) 385, 885
FatI CATG 8 cut(s) 13, 165, 710, 863, 1557, 1989, 2175, 2206
FblI GTMKAC 1 cut(s) 1676
Fnu4HI GCNGC 8 cut(s) 115, 257, 547, 619, 720, 1152, 1512, 2094
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 8 cut(s) 115, 257, 547, 619, 720, 1152, 1512, 2094
FspBI CTAG 8 cut(s) 71, 156, 533, 1382, 1532, 1697, 1838, 2012
GlaI GCGC 2 cut(s) 87, 911
GluI GCNGC 8 cut(s) 115, 257, 547, 619, 720, 1152, 1512, 2094
GsaI CCCAGC 1 cut(s) 371
HaeII RGCGCY 2 cut(s) 89, 913
HaeIII GGCC 7 cut(s) 5, 94, 220, 507, 719, 1187, 1984
HapII CCGG 8 cut(s) 176, 268, 378, 588, 632, 641, 766, 1259
HgaI GACGC 2 cut(s) 421, 2085
HhaI GCGC 2 cut(s) 88, 912
Hin1I GRCGYC 2 cut(s) 432, 910
Hin1II CATG 8 cut(s) 17, 169, 714, 867, 1561, 1993, 2179, 2210
Hin6I GCGC 2 cut(s) 86, 910
HinP1I GCGC 2 cut(s) 86, 910
HincII GTYRAC 3 cut(s) 652, 739, 823
HindII GTYRAC 3 cut(s) 652, 739, 823
HindIII AAGCTT 1 cut(s) 1915
HinfI GANTC 6 cut(s) 299, 1399, 1792, 1870, 2060, 2182
HpaI GTTAAC 2 cut(s) 652, 823
HpaII CCGG 8 cut(s) 176, 268, 378, 588, 632, 641, 766, 1259
HphI GGTGA 7 cut(s) 131, 198, 571, 1348, 1384, 2091, 2153
Hpy188I TCNGA 4 cut(s) 109, 407, 959, 1630
Hpy188III TCNNGA 5 cut(s) 361, 1655, 1889, 1895, 2207
Hpy99I CGWCG 2 cut(s) 287, 437
HpyAV CCTTC 5 cut(s) 592, 1217, 1576, 2112, 2132
HpyCH4III ACNGT 9 cut(s) 233, 287, 317, 473, 525, 554, 677, 1674, 1847
HpyCH4IV ACGT 2 cut(s) 798, 1856
HpyF3I CTNAG 2 cut(s) 1393, 1821
HpySE526I ACGT 2 cut(s) 798, 1856
Hsp92I GRCGYC 2 cut(s) 432, 910
Hsp92II CATG 8 cut(s) 17, 169, 714, 867, 1561, 1993, 2179, 2210
HspAI GCGC 2 cut(s) 86, 910
KasI GGCGCC 1 cut(s) 909
KspAI GTTAAC 2 cut(s) 652, 823
Kzo9I GATC 7 cut(s) 397, 568, 1158, 1477, 1526, 1660, 1891
LguI GCTCTTC 1 cut(s) 1167
LmnI GCTCC 6 cut(s) 110, 407, 634, 1383, 1637, 2008
Lsp1109I GCAGC 7 cut(s) 101, 243, 558, 630, 1163, 1523, 2105
LweI GCATC 4 cut(s) 12, 83, 234, 2050
MaeI CTAG 8 cut(s) 71, 156, 533, 1382, 1532, 1697, 1838, 2012
MaeII ACGT 2 cut(s) 798, 1856
MalI GATC 7 cut(s) 399, 570, 1160, 1479, 1528, 1662, 1893
MboI GATC 7 cut(s) 397, 568, 1158, 1477, 1526, 1660, 1891
MfeI CAATTG 1 cut(s) 421
MflI RGATCY 4 cut(s) 397, 1158, 1477, 1526
MhlI GDGCHC 4 cut(s) 324, 532, 1455, 1572
Mly113I GGCGCC 1 cut(s) 910
MlyI GAGTC 3 cut(s) 1393, 1801, 2054
MmeI TCCRAC 3 cut(s) 64, 132, 441
Mph1103I ATGCAT 1 cut(s) 712
MroXI GAANNNNTTC 2 cut(s) 1088, 1719
MseI TTAA 8 cut(s) 8, 53, 477, 603, 651, 822, 1179, 1961
MslI CAYNNNNRTG 7 cut(s) 170, 523, 1283, 1365, 1556, 1575, 2211
MspA1I CMGCKG 2 cut(s) 114, 1209
MspI CCGG 8 cut(s) 176, 268, 378, 588, 632, 641, 766, 1259
MspR9I CCNGG 4 cut(s) 217, 268, 589, 2046
MunI CAATTG 1 cut(s) 421
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 2 cut(s) 217, 2046
NarI GGCGCC 1 cut(s) 910
NciI CCSGG 2 cut(s) 268, 589
NdeII GATC 7 cut(s) 397, 568, 1158, 1477, 1526, 1660, 1891
NlaIII CATG 8 cut(s) 17, 169, 714, 867, 1561, 1993, 2179, 2210
NlaIV GGNNCC 8 cut(s) 174, 770, 791, 911, 1379, 1528, 1653, 1710
NmuCI GTSAC 3 cut(s) 204, 211, 2097
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 3 cut(s) 714, 867, 2179
PaeI GCATGC 2 cut(s) 714, 2179
PagI TCATGA 1 cut(s) 2206
PceI AGGCCT 3 cut(s) 94, 507, 1984
PciSI GCTCTTC 1 cut(s) 1167
PctI GAATGC 1 cut(s) 598
PdmI GAANNNNTTC 2 cut(s) 1088, 1719
PfeI GAWTC 3 cut(s) 299, 1870, 2182
PfoI TCCNGGA 2 cut(s) 266, 2044
PkrI GCNGC 8 cut(s) 116, 258, 548, 620, 721, 1153, 1513, 2095
PleI GAGTC 3 cut(s) 1393, 1800, 2054
PluTI GGCGCC 1 cut(s) 913
PpsI GAGTC 3 cut(s) 1393, 1800, 2054
PsiI TTATAA 2 cut(s) 1028, 1787
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 215, 2044
PspEI GGTNACC 2 cut(s) 204, 779
PspFI CCCAGC 1 cut(s) 367
PspGI CCWGG 2 cut(s) 215, 2044
PspN4I GGNNCC 8 cut(s) 174, 770, 791, 911, 1379, 1528, 1653, 1710
PspPI GGNCC 3 cut(s) 450, 1142, 1708
PsuI RGATCY 4 cut(s) 397, 1158, 1477, 1526
RsaI GTAC 6 cut(s) 308, 442, 502, 832, 1088, 1703
RsaNI GTAC 6 cut(s) 307, 441, 501, 831, 1087, 1702
RseI CAYNNNNRTG 7 cut(s) 170, 523, 1283, 1365, 1556, 1575, 2211
SacI GAGCTC 1 cut(s) 324
SapI GCTCTTC 1 cut(s) 1167
SaqAI TTAA 8 cut(s) 8, 53, 477, 603, 651, 822, 1179, 1961
SatI GCNGC 8 cut(s) 115, 257, 547, 619, 720, 1152, 1512, 2094
Sau3AI GATC 7 cut(s) 397, 568, 1158, 1477, 1526, 1660, 1891
Sau96I GGNCC 3 cut(s) 450, 1142, 1708
ScaI AGTACT 1 cut(s) 1088
SchI GAGTC 3 cut(s) 1393, 1801, 2054
ScrFI CCNGG 4 cut(s) 217, 268, 589, 2046
SduI GDGCHC 4 cut(s) 324, 532, 1455, 1572
SfaNI GCATC 4 cut(s) 12, 83, 234, 2050
SfcI CTRYAG 1 cut(s) 1756
SfoI GGCGCC 1 cut(s) 911
SinI GGWCC 3 cut(s) 450, 1142, 1708
SmiMI CAYNNNNRTG 7 cut(s) 170, 523, 1283, 1365, 1556, 1575, 2211
SmlI CTYRAG 2 cut(s) 81, 1146
SmoI CTYRAG 2 cut(s) 81, 1146
SphI GCATGC 2 cut(s) 714, 2179
SseBI AGGCCT 3 cut(s) 94, 507, 1984
SsiI CCGC 4 cut(s) 112, 117, 720, 1209
SspDI GGCGCC 1 cut(s) 909
SspI AATATT 1 cut(s) 197
SspMI CTAG 8 cut(s) 71, 156, 533, 1382, 1532, 1697, 1838, 2012
SstI GAGCTC 1 cut(s) 324
StuI AGGCCT 3 cut(s) 94, 507, 1984
StyD4I CCNGG 4 cut(s) 215, 266, 587, 2044
StyI CCWWGG 6 cut(s) 89, 508, 784, 802, 903, 1381
TaaI ACNGT 9 cut(s) 233, 287, 317, 473, 525, 554, 677, 1674, 1847
TaiI ACGT 2 cut(s) 801, 1859
TaqI TCGA 7 cut(s) 126, 339, 360, 839, 1200, 1289, 1779
TaqII GACCGA 1 cut(s) 2093
TatI WGTACW 3 cut(s) 306, 830, 1086
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 3 cut(s) 299, 1870, 2182
Tru1I TTAA 8 cut(s) 8, 53, 477, 603, 651, 822, 1179, 1961
Tru9I TTAA 8 cut(s) 8, 53, 477, 603, 651, 822, 1179, 1961
TscAI CASTG 7 cut(s) 322, 433, 530, 996, 1621, 1740, 1866
TseFI GTSAC 3 cut(s) 204, 211, 2097
TseI GCWGC 7 cut(s) 114, 256, 546, 618, 1151, 1511, 2093
Tsp45I GTSAC 3 cut(s) 204, 211, 2097
TspDTI ATGAA 9 cut(s) 201, 547, 1067, 1315, 1448, 1517, 2006, 2151, 2213
TspGWI ACGGA 2 cut(s) 1155, 1248
TspRI CASTG 7 cut(s) 322, 433, 530, 996, 1621, 1740, 1866
VneI GTGCAC 1 cut(s) 1568
VpaK11BI GGWCC 3 cut(s) 450, 1142, 1708
XapI RAATTY 4 cut(s) 871, 984, 1132, 1609
XceI RCATGY 3 cut(s) 714, 867, 2179
XmaJI CCTAGG 1 cut(s) 1381
XmiI GTMKAC 1 cut(s) 1676
XmnI GAANNNNTTC 2 cut(s) 1088, 1719
XspI CTAG 8 cut(s) 71, 156, 533, 1382, 1532, 1697, 1838, 2012
ZrmI AGTACT 1 cut(s) 1088
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.