Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

2099960 .. 2100699

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0012800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTTTTTGCAGTTGTTTTTCACGGTGGCTTTCTCGGCGGTGCCTCTGACTCTTTACGTTCCGCCGCTCCGAAGCTTAAACCCGTTTGTGGAGACCATGGAGGATCTAATGTTGGAATCCAGAACCTACACGAATAGGGTCTACCCACGTGTCCGCCATCTCTGGCGTAGGATCTTGGATTGTTTGCTTTGCAGCACCACCACCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

69

Amino Acids

8.24

Weight (kDa)

9.38

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	4 cut(s)	38, 62, 65, 154
AclWI	GGATC	2 cut(s)	111, 179
AcvI	CACGTG	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	88, 204
AflIII	ACRYGT	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	111, 179
ApeKI	GCWGC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	40
BbrPI	CACGTG	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	65, 193
BlsI	GCNGC	2 cut(s)	66, 194
Bme1390I	CCNGG	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 204
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	88, 204
BseXI	GCAGC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	88, 204
BsmAI	GTCTC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	103, 171
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	4 cut(s)	38, 62, 65, 154
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	2 cut(s)	111, 179
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	103, 171
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	106, 174
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	103, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	2 cut(s)	103, 171
BstYI	RGATCY	2 cut(s)	103, 171
BtgI	CCRYGG	1 cut(s)	96
CsiI	ACCWGGT	1 cut(s)	203
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	2 cut(s)	29, 75
CviKI_1	RGCY	2 cut(s)	29, 75
DpnI	GATC	2 cut(s)	105, 173
DpnII	GATC	2 cut(s)	103, 171
EciI	GGCGGA	2 cut(s)	51, 143
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	86
Eco72I	CACGTG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	100
FaiI	YATR	1 cut(s)	98
FatI	CATG	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	65, 193
Fsp4HI	GCNGC	2 cut(s)	65, 193
GluI	GCNGC	2 cut(s)	65, 193
Hin1II	CATG	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	2 cut(s)	49, 116
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	48, 71
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	57, 148
HpyCH4V	TGCA	2 cut(s)	10, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	2 cut(s)	57, 148
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	103, 171
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	3 cut(s)	133, 148, 190
Lsp1109I	GCAGC	1 cut(s)	204
MabI	ACCWGGT	1 cut(s)	203
MaeII	ACGT	2 cut(s)	57, 148
MalI	GATC	2 cut(s)	105, 173
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	2 cut(s)	103, 171
MflI	RGATCY	2 cut(s)	103, 171
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	2 cut(s)	54, 94
MseI	TTAA	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	35
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	103, 171
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	66, 194
PleI	GAGTC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	203
PspCI	CACGTG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	42
PsuI	RGATCY	2 cut(s)	103, 171
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	2 cut(s)	65, 193
Sau3AI	GATC	2 cut(s)	103, 171
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	5 cut(s)	60, 77, 128, 151, 209
SexAI	ACCWGGT	1 cut(s)	203
SsiI	CCGC	4 cut(s)	38, 62, 65, 154
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	60, 151
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseI	GCWGC	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.