Rorug03G0049700
ERF Family

G-type lectin S-receptor-like serine threonine-protein kinase SD2-5

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
3877435 .. 3884364
6930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0049700.1

Sequence Viewer

Length: 1482 bp
ATGGGCAGCAGAGAAAACATAGAAGCAGGAGAGTTAGCAAGTCCTCTGCTTGACGTCGCCGGCGGCCGGAACAGCGGTGGTGATGACGTTGGTGGAAGTAGTAGAAGTGGAACTGGAAGTGGAAGTGGAAGTGAAAATTCTTCAGCCACAAGTATGGTTGTACTCAGCACCTTGGTTGCTGTGTCTGGTTCCTATGTTTTTGGCTCTGCGGTGGGATATTCCTCACCTGCTCGGTCAGGAATCATGGATGATTTGGGCCTCTCTGTTGCTGAGTACTCGGTTTTCGGTTCAATATTGACAATTGGAGCAATGATAGGTGCAGTAGTGAGTGGGAAAATGGCAGATTACATAGGTAGAAGAGGTACTATGGGATTTTCACAGATATTCTGCATATTTGGATGGCTAGCCATAGCTCTCTCTAAGGTTGCTTGGTGGGCTGATCTTGGAAGACTATTGGTAGGATGTGGAATGGGGCTACTTTCTTATGTGGTGCCTATATACATAGCAGAAATAACACCAAAGAATCTGCGGGGAGGATTTACGACAGTTCATCAGTTGATGATATGTTGTGGTGTTTCACTAACATATCTTATTGGGGCTTTTGTGAACTGGCGAGCTTTGGCACTGATTGGAACTATTCCTTGTGTTGTACAGATTTTAGGTCTCTTCTTCATTCCAGAGTCTCCTAGATGGCTGGCAAAAATAGGTAAAGAGAAAGAGGGGGAAGCAGCTCTTCAGTACCTTAGGGGGGAGAATGCTGATACTTCTGGAGAAGCAGCTGAGATTAGAGATTATACAAAAACTCTGAAGCTTCTCTCAGAAGCAAGCATTCTTGACTTATTTCAGTGGAGATATGCTCATTCCCTCCTTGTCGGAGTTGGCCTGATGGTACTTCAACAATTTGGAGGGGTTAATGGCATTGCCTTCTATGCAAGTACCATATTCATTTCAGCTGGGTTCTCTGATAGTATAGGGACTATAGCTATGGTTGCTGTTCAGATTCCGATGACAGCTTTGGGTGTAGTTTTAATGGACAAATCTGGAAGACGTCCACTTCTTCTGGTATCTTCAGCAGGAACATGCTTAGGTTGCCTCTTTGTGGGATTGTCATTCTTGTTGAAGGACCTTCAAGGATGGAGTCAGGTCACTCCCATATTCGCTCTTGTTGGCGTACTGGTATATACAGGATCATTCTCATTAGGCATGGGAGGAATTCCTTGGGTTATAATGTCGGAGATATTTCCTATAAACATGAAAGGCTCGGCTGGAAGCCTGGTGACATTGGTTAGCTGGTTAGGTTCTTGGATTGTGTCATATGCATTTAATTTCCTAATGGATTGGAATTCAGCAGGGACATTCTTCATGTTTTCAAGCATATGTGGAGTAACTGTTTTATTTGTTGCAAAGCTTGTACCGGAGACAAAGGGGCGAACACTTGAAGAAATACAAGCCTCTATGAATCCGTTTTCTGTAAAACGATAA

Protein Analysis

493

Amino Acids

52.11

Weight (kDa)

6.21

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 69 - 336 4.3e-20 Major Facilitator Superfamily
Sugar_tr PF00083 78 - 484 1.3e-89 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1226
AarI CACCTGC 1 cut(s) 235
AatII GACGTC 2 cut(s) 57, 1051
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 490
AciI CCGC 4 cut(s) 63, 75, 209, 529
AclWI GGATC 1 cut(s) 1195
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 3 cut(s) 136, 1212, 1342
AcuI CTGAAG 4 cut(s) 126, 719, 827, 1053
AcyI GRCGYC 2 cut(s) 54, 1048
AfaI GTAC 9 cut(s) 162, 275, 364, 651, 740, 891, 937, 1173, 1413
AfiI CCNNNNNNNGG 3 cut(s) 66, 748, 1099
AgsI TTSAA 6 cut(s) 291, 896, 1120, 1130, 1371, 1439
AjnI CCWGG 1 cut(s) 1272
Alw26I GTCTC 3 cut(s) 668, 687, 1412
AlwI GGATC 1 cut(s) 1195
AoxI GGCC 3 cut(s) 64, 256, 880
ApeKI GCWGC 3 cut(s) 6, 728, 776
ApoI RAATTY 3 cut(s) 136, 1212, 1342
AspS9I GGNCC 2 cut(s) 256, 1123
AsuHPI GGTGA 3 cut(s) 92, 216, 1288
AsuNHI GCTAGC 1 cut(s) 403
AvaII GGWCC 1 cut(s) 1123
AxyI CCTNAGG 1 cut(s) 743
BanI GGYRCC 1 cut(s) 490
BbsI GAAGAC 2 cut(s) 454, 1051
BbvI GCAGC 3 cut(s) 18, 740, 788
BccI CCATC 4 cut(s) 393, 684, 880, 1128
BciT130I CCWGG 1 cut(s) 1274
BcoDI GTCTC 3 cut(s) 668, 687, 1412
BfaI CTAG 2 cut(s) 404, 687
BfmI CTRYAG 1 cut(s) 978
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 4 cut(s) 7, 64, 729, 777
BlsI GCNGC 4 cut(s) 8, 65, 730, 778
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 1274
Bme18I GGWCC 1 cut(s) 1123
BmgT120I GGNCC 2 cut(s) 256, 1123
BmiI GGNNCC 2 cut(s) 190, 492
BmrFI CCNGG 1 cut(s) 1274
BmtI GCTAGC 1 cut(s) 407
BpiI GAAGAC 2 cut(s) 454, 1051
BplI GAGNNNNNCTC 2 cut(s) 841, 873
BpmI CTGGAG 1 cut(s) 789
Bpu10I CCTNAGC 1 cut(s) 1084
BsaHI GRCGYC 2 cut(s) 54, 1048
BsaI GGTCTC 1 cut(s) 668
BsaJI CCNNGG 2 cut(s) 171, 1217
BsaWI WCCGGW 1 cut(s) 1414
BsaXI ACNNNNNCTCC 2 cut(s) 1374, 1404
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 748, 1099
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 118, 614, 1179
Bse21I CCTNAGG 1 cut(s) 743
Bse3DI GCAATG 2 cut(s) 315, 918
BseBI CCWGG 1 cut(s) 1274
BseDI CCNNGG 2 cut(s) 171, 1217
BseGI GGATG 4 cut(s) 253, 404, 467, 1139
BseLI CCNNNNNNNGG 3 cut(s) 66, 748, 1099
BseMI GCAATG 2 cut(s) 315, 918
BseMII CTCAG 4 cut(s) 178, 261, 771, 831
BseNI ACTGG 3 cut(s) 118, 614, 1179
BseX3I CGGCCG 1 cut(s) 64
BseXI GCAGC 3 cut(s) 18, 740, 788
BseYI CCCAGC 1 cut(s) 953
BsgI GTGCAG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 3 cut(s) 66, 258, 882
BshNI GGYRCC 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 60, 67, 1415
BslFI GGGAC 2 cut(s) 988, 1366
BslI CCNNNNNNNGG 3 cut(s) 66, 748, 1099
BsmAI GTCTC 3 cut(s) 668, 687, 1412
BsmFI GGGAC 2 cut(s) 988, 1366
BsmI GAATGC 2 cut(s) 760, 828
BsnI GGCC 3 cut(s) 66, 258, 882
Bso31I GGTCTC 1 cut(s) 668
Bsp1407I TGTACA 1 cut(s) 649
Bsp143I GATC 2 cut(s) 439, 1187
BspACI CCGC 4 cut(s) 63, 75, 209, 529
BspANI GGCC 3 cut(s) 66, 258, 882
BspCNI CTCAG 4 cut(s) 177, 262, 772, 830
BspLI GGNNCC 2 cut(s) 190, 492
BspMI ACCTGC 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 407
BspPI GGATC 1 cut(s) 1195
BspQI GCTCTTC 1 cut(s) 738
BspT107I GGYRCC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 668
BsrDI GCAATG 2 cut(s) 315, 918
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 649
BsrI ACTGG 3 cut(s) 118, 614, 1179
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 171, 1217
BssMI GATC 2 cut(s) 439, 1187
BssNI GRCGYC 2 cut(s) 54, 1048
BssT1I CCWWGG 2 cut(s) 171, 1217
Bst2UI CCWGG 1 cut(s) 1274
Bst4CI ACNGT 2 cut(s) 547, 1390
Bst6I CTCTTC 3 cut(s) 352, 671, 738
BstACI GRCGYC 2 cut(s) 54, 1048
BstAUI TGTACA 1 cut(s) 649
BstC8I GCNNGC 5 cut(s) 61, 405, 615, 696, 826
BstDEI CTNAG 7 cut(s) 164, 270, 420, 743, 780, 817, 1084
BstF5I GGATG 4 cut(s) 253, 404, 467, 1139
BstKTI GATC 2 cut(s) 442, 1190
BstMAI GTCTC 3 cut(s) 668, 687, 1412
BstMBI GATC 2 cut(s) 439, 1187
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 5 cut(s) 72, 434, 929, 989, 1089
BstNI CCWGG 1 cut(s) 1274
BstNSI RCATGY 1 cut(s) 1083
BstSCI CCNGG 1 cut(s) 1272
BstSFI CTRYAG 1 cut(s) 978
BstV1I GCAGC 3 cut(s) 18, 740, 788
BstV2I GAAGAC 2 cut(s) 454, 1051
BstXI CCANNNNNNTGG 1 cut(s) 154
BstZI CGGCCG 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 743
BsuRI GGCC 3 cut(s) 66, 258, 882
BtsCI GGATG 4 cut(s) 253, 404, 467, 1139
BtsIMutI CAGTG 2 cut(s) 623, 851
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 5 cut(s) 61, 405, 615, 696, 826
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 256, 1123
Csp6I GTAC 9 cut(s) 161, 274, 363, 650, 739, 890, 936, 1172, 1412
CviAII CATG 5 cut(s) 244, 1080, 1204, 1252, 1363
CviQI GTAC 9 cut(s) 161, 274, 363, 650, 739, 890, 936, 1172, 1412
DdeI CTNAG 7 cut(s) 164, 270, 420, 743, 780, 817, 1084
DpnI GATC 2 cut(s) 441, 1189
DpnII GATC 2 cut(s) 439, 1187
EaeI YGGCCR 1 cut(s) 64
EagI CGGCCG 1 cut(s) 64
Eam1104I CTCTTC 3 cut(s) 352, 671, 738
EarI CTCTTC 3 cut(s) 352, 671, 738
EclXI CGGCCG 1 cut(s) 64
Eco130I CCWWGG 2 cut(s) 171, 1217
Eco31I GGTCTC 1 cut(s) 668
Eco47I GGWCC 1 cut(s) 1123
Eco52I CGGCCG 1 cut(s) 64
Eco57I CTGAAG 4 cut(s) 126, 719, 827, 1053
Eco81I CCTNAGG 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 1123
EcoRI GAATTC 2 cut(s) 1212, 1342
EcoRII CCWGG 1 cut(s) 1272
EcoT14I CCWWGG 2 cut(s) 171, 1217
EcoT22I ATGCAT 1 cut(s) 1321
ErhI CCWWGG 2 cut(s) 171, 1217
FaeI CATG 5 cut(s) 247, 1083, 1207, 1255, 1366
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 2 cut(s) 988, 1366
FatI CATG 5 cut(s) 243, 1079, 1203, 1251, 1362
FauI CCCGC 1 cut(s) 522
FauNDI CATATG 2 cut(s) 1315, 1376
Fnu4HI GCNGC 4 cut(s) 7, 64, 729, 777
FokI GGATG 4 cut(s) 260, 411, 474, 1146
Fsp4HI GCNGC 4 cut(s) 7, 64, 729, 777
FspBI CTAG 2 cut(s) 404, 687
GluI GCNGC 4 cut(s) 7, 64, 729, 777
GsaI CCCAGC 1 cut(s) 957
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 3 cut(s) 66, 258, 882
HapII CCGG 3 cut(s) 60, 67, 1415
Hin1I GRCGYC 2 cut(s) 54, 1048
Hin1II CATG 5 cut(s) 247, 1083, 1207, 1255, 1366
HindIII AAGCTT 2 cut(s) 809, 1406
HinfI GANTC 6 cut(s) 240, 523, 680, 1000, 1138, 1459
HpaII CCGG 3 cut(s) 60, 67, 1415
HphI GGTGA 3 cut(s) 92, 216, 1288
Hpy166II GTNNAC 2 cut(s) 607, 1052
Hpy188I TCNGA 7 cut(s) 807, 820, 875, 964, 999, 1005, 1234
Hpy188III TCNNGA 5 cut(s) 237, 677, 768, 833, 1041
Hpy8I GTNNAC 2 cut(s) 607, 1052
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 3 cut(s) 934, 1114, 1136
HpyCH4III ACNGT 2 cut(s) 547, 1390
HpyCH4IV ACGT 3 cut(s) 54, 87, 1048
HpyCH4V TGCA 5 cut(s) 320, 390, 932, 1319, 1403
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 434, 929, 989, 1089
HpyF3I CTNAG 7 cut(s) 164, 270, 420, 743, 780, 817, 1084
HpySE526I ACGT 3 cut(s) 54, 87, 1048
Hsp92I GRCGYC 2 cut(s) 54, 1048
Hsp92II CATG 5 cut(s) 247, 1083, 1207, 1255, 1366
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 439, 1187
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 3 cut(s) 18, 740, 788
MaeI CTAG 2 cut(s) 404, 687
MaeII ACGT 3 cut(s) 54, 87, 1048
MaeIII GTNAC 3 cut(s) 1144, 1276, 1384
MalI GATC 2 cut(s) 441, 1189
MboI GATC 2 cut(s) 439, 1187
MfeI CAATTG 1 cut(s) 300
MluCI AATT 6 cut(s) 136, 300, 899, 1212, 1324, 1342
MlyI GAGTC 2 cut(s) 689, 1147
MmeI TCCRAC 2 cut(s) 853, 1212
Mph1103I ATGCAT 1 cut(s) 1321
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 3 cut(s) 912, 1028, 1323
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 3 cut(s) 75, 779, 953
MspI CCGG 3 cut(s) 60, 67, 1415
MspR9I CCNGG 1 cut(s) 1274
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 2 cut(s) 760, 828
MvaI CCWGG 1 cut(s) 1274
MwoI GCNNNNNNNGC 5 cut(s) 72, 434, 929, 989, 1089
NaeI GCCGGC 1 cut(s) 61
NdeI CATATG 2 cut(s) 1315, 1376
NdeII GATC 2 cut(s) 439, 1187
NgoMIV GCCGGC 1 cut(s) 59
NheI GCTAGC 1 cut(s) 403
NlaIII CATG 5 cut(s) 247, 1083, 1207, 1255, 1366
NlaIV GGNNCC 2 cut(s) 190, 492
NmeAIII GCCGAG 1 cut(s) 1241
NmuCI GTSAC 2 cut(s) 1144, 1276
NsiI ATGCAT 1 cut(s) 1321
NspI RCATGY 1 cut(s) 1083
PaqCI CACCTGC 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 738
PctI GAATGC 2 cut(s) 760, 828
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 4 cut(s) 240, 523, 1000, 1459
PkrI GCNGC 4 cut(s) 8, 65, 730, 778
PleI GAGTC 2 cut(s) 688, 1146
PpsI GAGTC 2 cut(s) 688, 1146
PpuMI RGGWCCY 1 cut(s) 1123
PsiI TTATAA 1 cut(s) 1226
Psp5II RGGWCCY 1 cut(s) 1123
Psp6I CCWGG 1 cut(s) 1272
PspFI CCCAGC 1 cut(s) 953
PspGI CCWGG 1 cut(s) 1272
PspN4I GGNNCC 2 cut(s) 190, 492
PspPI GGNCC 2 cut(s) 256, 1123
PspPPI RGGWCCY 1 cut(s) 1123
PvuII CAGCTG 2 cut(s) 779, 953
RsaI GTAC 9 cut(s) 162, 275, 364, 651, 740, 891, 937, 1173, 1413
RsaNI GTAC 9 cut(s) 161, 274, 363, 650, 739, 890, 936, 1172, 1412
RseI CAYNNNNRTG 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 3 cut(s) 912, 1028, 1323
SatI GCNGC 4 cut(s) 7, 64, 729, 777
Sau3AI GATC 2 cut(s) 439, 1187
Sau96I GGNCC 2 cut(s) 256, 1123
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 2 cut(s) 689, 1147
ScrFI CCNGG 1 cut(s) 1274
SfcI CTRYAG 1 cut(s) 978
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 1 cut(s) 1123
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 6 cut(s) 136, 300, 899, 1212, 1324, 1342
SsiI CCGC 4 cut(s) 63, 75, 209, 529
SspI AATATT 1 cut(s) 294
SspMI CTAG 2 cut(s) 404, 687
StyD4I CCNGG 1 cut(s) 1272
StyI CCWWGG 2 cut(s) 171, 1217
TaaI ACNGT 2 cut(s) 547, 1390
TaiI ACGT 3 cut(s) 57, 90, 1051
TaqII GACCGA 1 cut(s) 222
TasI AATT 6 cut(s) 136, 300, 899, 1212, 1324, 1342
TatI WGTACW 3 cut(s) 160, 273, 649
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 4 cut(s) 240, 523, 1000, 1459
Tru1I TTAA 3 cut(s) 912, 1028, 1323
Tru9I TTAA 3 cut(s) 912, 1028, 1323
TscAI CASTG 2 cut(s) 630, 851
TseFI GTSAC 2 cut(s) 1144, 1276
TseI GCWGC 3 cut(s) 6, 728, 776
Tsp45I GTSAC 2 cut(s) 1144, 1276
TspDTI ATGAA 6 cut(s) 539, 661, 934, 1268, 1351, 1472
TspGWI ACGGA 1 cut(s) 1452
TspRI CASTG 2 cut(s) 630, 851
VpaK11BI GGWCC 1 cut(s) 1123
XapI RAATTY 3 cut(s) 136, 1212, 1342
XceI RCATGY 1 cut(s) 1083
XspI CTAG 2 cut(s) 404, 687
ZraI GACGTC 2 cut(s) 55, 1049
ZrmI AGTACT 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.