Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

20039989 .. 20048088

Gene Structure 8100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0219400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2820 bp

ATGACCCGACTCTCGGAAAAGCTCCGTCTGTCTCTCTTCCTTCTTCTGTACAATCCAACCCGGTTTCTCTCTCCTCCTAAGCAGCTCTTGGCTACTCTCTCCGTCTCCACGCTCCACCTCGCACGCGCCCTCGCCTCCAAAACCCTAGCCCTCTTCTTCTTCTTCTTCGCCATGGACGACACCTTCCCCTTCGCCTCTCCCGACGGCGACAACGACGGCTGGGACTTCGACCTCCAGTCCCGCAACCGCGCCCAGCGCCCCCGCCTCCTCCACGACTACGACGACGACGACGACGTTTCCGACAATGCCGTCGATAAGGTCTACCTCGTTCCCTACAGGTGGTGGAAGGAGGTTCGGACCGAAGACGATGATCGTGGCGAAGGGGTGTTGTACAGCACTTCGCCGGAGGAAGACGACTCCGGCTCGGAAATTGTGTTGAGTTTGAGGAAGAGGGACTCTGCTGAAGAAGGGTTTTCAGGTCGCGAGTATGCCTTGGTCCCTGAAGCGACATGGTGCCGCGCACTCATACGGCATTATGATTTTAATACAGCAGCAATGGATAATGTGAGCTTCTTTGGTGATGAAGAGTTTTTAAAGGATGTCTTTTCTTTACAAATTAGGCTCTTTGTTTCCTGGGAAACAAATTCATTGGTTGTAAAGATCAGCCAAAAGGATAATGCGGCTGATTCTTTCAAGAGAGCCTGCATTATTTTCAGTTCAGAGCCCGAGCCGTTGCATATTTGGGACTTCTCAGGGCAGACAACCCAATTTTTCATGAATGACAGAATTAGTTTGCCAAATGACATTCCTGGACAACTGAACAAAGAGATTGTCCTGGAATTGCATCTTCATGGATTTTCAGAGGTCAGAGGTTGGAGGAGTGATGACATGGCTGAAAACCACTTCAGTATTGATGGTTGTATTAGTGGTGGCTCTTCTAAAATGAATGGGAACATTTACTACGTCAATCCCTATTTAAACTCAAGCAACTCCTGGCGAAGTGCTGTTATGTATAGAGGAGTTGGTTCTTTAGGCTTAACTGGTATAAAGAATCTTGGGAATACTTGTTTTATGAACAGTGCAATCCAATGTTTGGTGCACACTCCAAAGCTTGTTGACTATTTTCTAGGAGATTACCGGAAAGACATGAACTATCAGAACCCATTGGGAATGAAAGGAGAGCTTGCTTTTGCATTTGGAGAATTATTGAGGAGATTATGGGCTCCAGGTGCAAGGCCAGTGGCTCCAAGAATGTTCAAGCAAAAACTTGCCAGTTTTGCTCCTCAATTCAGTGGCTATAATCAACATGATTCCCAGGAACTCCTTGCTTTTTTGCTGGATGGTCTCCATGAAGATCTAAATCGTGTGAAATGCAAGCCATATTTTGAAGCTAAAGATGCAGAGGGTCGTCCAGATGAAGAAGTGGCGGAAGAATATTGGCTGAATCACCTTGCTCGCAATGATTCCATTATTGTTAATGCATACCAGGGTCAATACCGGTCAAAATTGGTTTGCCCCGATTGCAACAAGGTGTCCATTACATTTGACCCCTTTATGTATCTATCACTGCCATTACCTTCTACAACAATGCGGAGTATGACTTTGACGGTTTTAAGCACAGATGGTGCTGCATTGCCTACTACATTTACTGTAACAGTGCCAAAGAGTGGGAAGCTCGTGGATCTTACTGAAGCCTTAAGTATTGCCTGTTCTCTAAGAGATGATGAAACCCTGTTGGTGGCTGAGATATACCAGTGTCGCATATTTCGTCTATTGGAGGATCCATCTGATTCATTAGCCTTTGTTAGAGACGCTGACAAACTGGTTGCTTATCGCTTACCAAAAGATTTTGAGCGATCGCACTTGGTTGTGTTTCTTCATCAGGAGAAGGGAAAGTATTACTATAATCAAGACACAATTGGTATCCCACTTTTAGCAAGGGTGTCTGATCCTTGTTATGGATCTGATATTCGCAACGAATTCCTAAATAATTTAAATCCATTCTTGAAGCCTGATGGAGATATATCAGATGTTTTTGATGATGATTCTGGAAACTGTGCTAATGAAGACTCTAACAAGGAGGATGACAGTAGTCCTACAGTTTGGGATAATGATTCTGACACAGACAGGGGAACAATGGGTGAAGCGCTGTTGGATACTGACTTCAAATTTTACTTAGCAGATACAAGAAAGGAAATAGAGTTGAATCAGCTGATAGAGGTCTCACGGTTGCCTGTGATACCAAGGCCTAAGATACTGGAGGTGATTGTTTTATGGACAGATGAGATGATTAACAAGTATGATACATGCCTTCTAAACTCTTTGCCTGAGGTTTTCAACATTTTCACGAGTAGTGAAGAATCTGTTTCCCTTTACAAATGCCTTGAGGCCTTTCTGAAGGAAGAACCTCTAGGACCTGAAGACATGTGGTTCTGCCCTAGCTGCAAGACTCCTCGGCAAGCCAGCAAAAAGTTAGATCTTTGGAGATTGCCTGAGATATTGGTTATTCATCTGAAAAGATTCTCGTATGACCATTATTTTAAGAACAAGCTAGAAACATTAGTTGATTTTCCCATTTATGATATGGACATCTCAACATACATAACCCACCGCAGTAACCAGTTATCCAGTCGATACATGTTGTACGCAATCAGTAATCACTATGGTGGCTTGGGTGGTGGTCACTATACGGCATTTGTTCATCTCGGTAAGGGTTCATGGTATGAGTTTGATGATGATAGAGTTTCTGCTGTTAATGAGGAGAGGATTAAGACTTCAGCAGCATATGTTCTTTTCTACCGAAGAGTACCAGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

939

Amino Acids

107.39

Weight (kDa)

4.92

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_UBP8	PF25242	206 - 260	2.5e-30	UBP8-like, ubiquitin-like domain
UCH	PF00443	347 - 933	2.1e-73	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	513
AccB7I	CCANNNNNTGG	2 cut(s)	1093, 1667
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	4 cut(s)	126, 249, 483, 519
AciI	CCGC	8 cut(s)	241, 247, 262, 517, 680, 1427, 1591, 2611
AclWI	GGATC	5 cut(s)	1689, 1775, 1788, 1943, 1969
AcsI	RAATTY	3 cut(s)	643, 1979, 2168
AcuI	CTGAAG	7 cut(s)	483, 522, 889, 1710, 2417, 2439, 2760
AfaI	GTAC	4 cut(s)	50, 392, 2645, 2808
AfeI	AGCGCT	1 cut(s)	2148
AfiI	CCNNNNNNNGG	6 cut(s)	13, 339, 1093, 1667, 1738, 1958
AflII	CTTAAG	1 cut(s)	1696
AflIII	ACRYGT	2 cut(s)	2424, 2637
AgeI	ACCGGT	1 cut(s)	1497
AgsI	TTSAA	7 cut(s)	694, 1258, 1388, 2008, 2167, 2206, 2338
AhdI	GACNNNNNGTC	1 cut(s)	235
AjnI	CCWGG	7 cut(s)	632, 808, 834, 992, 1225, 1314, 1485
AleI	CACNNNNGTG	1 cut(s)	2664
Alw21I	GWGCWC	1 cut(s)	1101
Alw26I	GTCTC	5 cut(s)	36, 109, 1349, 1803, 2227
Alw44I	GTGCAC	1 cut(s)	1097
AlwI	GGATC	5 cut(s)	1689, 1775, 1788, 1943, 1969
Ama87I	CYCGRG	1 cut(s)	725
Aor51HI	AGCGCT	1 cut(s)	2148
AoxI	GGCC	3 cut(s)	1235, 2246, 2388
ApaLI	GTGCAC	1 cut(s)	1097
ApeKI	GCWGC	5 cut(s)	82, 551, 1628, 2442, 2780
ApoI	RAATTY	3 cut(s)	643, 1979, 2168
ArsI	GACNNNNNNTTYG	2 cut(s)	816, 848
AsiGI	ACCGGT	1 cut(s)	1497
AsiSI	GCGATCGC	1 cut(s)	1859
Asp700I	GAANNNNTTC	1 cut(s)	2519
AspLEI	GCGC	5 cut(s)	128, 251, 258, 521, 2149
AspS9I	GGNCC	3 cut(s)	357, 496, 2414
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	590, 1439, 2153, 2275
AvaI	CYCGRG	1 cut(s)	725
AvaII	GGWCC	3 cut(s)	357, 496, 2414
AxyI	CCTNAGG	1 cut(s)	2328
BaeGI	GKGCMC	1 cut(s)	1101
BamHI	GGATCC	1 cut(s)	1780
BanI	GGYRCC	1 cut(s)	513
BanII	GRGCYC	2 cut(s)	726, 1225
BauI	CACGAG	2 cut(s)	1676, 2347
BbsI	GAAGAC	4 cut(s)	369, 417, 2073, 2427
Bbv12I	GWGCWC	1 cut(s)	1101
BbvI	GCAGC	5 cut(s)	94, 563, 1615, 2429, 2792
BccI	CCATC	5 cut(s)	908, 1334, 1616, 1792, 2009
BceAI	ACGGC	6 cut(s)	220, 232, 293, 545, 715, 2706
BciT130I	CCWGG	7 cut(s)	634, 810, 836, 994, 1227, 1316, 1487
BciVI	GTATCC	2 cut(s)	1934, 2149
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	5 cut(s)	36, 109, 1349, 1803, 2227
BfaI	CTAG	5 cut(s)	146, 1127, 2411, 2439, 2552
BfmI	CTRYAG	2 cut(s)	334, 2097
BfoI	RGCGCY	2 cut(s)	259, 2150
BfrI	CTTAAG	1 cut(s)	1696
BfuI	GTATCC	2 cut(s)	1934, 2149
BglII	AGATCT	2 cut(s)	1354, 2476
BisI	GCNGC	7 cut(s)	83, 517, 552, 681, 1629, 2443, 2781
BlsI	GCNGC	7 cut(s)	84, 518, 553, 682, 1630, 2444, 2782
Bme1390I	CCNGG	8 cut(s)	61, 634, 810, 836, 994, 1227, 1316, 1487
Bme18I	GGWCC	3 cut(s)	357, 496, 2414
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	725
BmgT120I	GGNCC	3 cut(s)	357, 496, 2414
BmiI	GGNNCC	5 cut(s)	498, 515, 1224, 1245, 1782
BmrFI	CCNGG	8 cut(s)	61, 634, 810, 836, 994, 1227, 1316, 1487
BmsI	GCATC	2 cut(s)	853, 1387
BoxI	GACNNNNGTC	1 cut(s)	2091
BpiI	GAAGAC	4 cut(s)	369, 417, 2073, 2427
BpmI	CTGGAG	3 cut(s)	218, 1209, 2279
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	967, 2405
BpuMI	CCSGG	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	1359
BsaI	GGTCTC	2 cut(s)	1349, 2227
BsaJI	CCNNGG	7 cut(s)	171, 492, 633, 1314, 1486, 2243, 2453
BsaWI	WCCGGW	2 cut(s)	1137, 1497
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 339, 1093, 1667, 1738, 1958
Bse118I	RCCGGY	1 cut(s)	1497
Bse1I	ACTGG	9 cut(s)	235, 1045, 1238, 1272, 1753, 1827, 2262, 2620, 2628
Bse21I	CCTNAGG	1 cut(s)	2328
Bse3DI	GCAATG	3 cut(s)	561, 1465, 1631
Bse8I	GATNNNNATC	1 cut(s)	1359
BseBI	CCWGG	7 cut(s)	634, 810, 836, 994, 1227, 1316, 1487
BseDI	CCNNGG	7 cut(s)	171, 492, 633, 1314, 1486, 2243, 2453
BseGI	GGATG	3 cut(s)	604, 1345, 2089
BseJI	GATNNNNATC	1 cut(s)	1359
BseLI	CCNNNNNNNGG	6 cut(s)	13, 339, 1093, 1667, 1738, 1958
BseMI	GCAATG	3 cut(s)	561, 1465, 1631
BseMII	CTCAG	4 cut(s)	765, 1734, 2319, 2484
BseNI	ACTGG	9 cut(s)	235, 1045, 1238, 1272, 1753, 1827, 2262, 2620, 2628
BseRI	GAGGAG	8 cut(s)	63, 257, 892, 1032, 1225, 1272, 2442, 2774
BseSI	GKGCMC	1 cut(s)	1101
BseXI	GCAGC	5 cut(s)	94, 563, 1615, 2429, 2792
BseYI	CCCAGC	2 cut(s)	219, 252
Bsh1236I	CGCG	4 cut(s)	126, 249, 483, 519
Bsh1285I	CGRYCG	1 cut(s)	1859
BshFI	GGCC	3 cut(s)	1237, 2248, 2390
BshNI	GGYRCC	1 cut(s)	513
BshTI	ACCGGT	1 cut(s)	1497
BsiEI	CGRYCG	1 cut(s)	1859
BsiHKAI	GWGCWC	1 cut(s)	1101
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	5 cut(s)	61, 404, 420, 1138, 1498
BslFI	GGGAC	5 cut(s)	223, 236, 467, 482, 758
BslI	CCNNNNNNNGG	6 cut(s)	13, 339, 1093, 1667, 1738, 1958
BsmAI	GTCTC	5 cut(s)	36, 109, 1349, 1803, 2227
BsmBI	CGTCTC	2 cut(s)	109, 1803
BsmFI	GGGAC	5 cut(s)	223, 236, 467, 482, 758
BsnI	GGCC	3 cut(s)	1237, 2248, 2390
Bso31I	GGTCTC	2 cut(s)	1349, 2227
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	3 cut(s)	726, 1101, 1225
Bsp1407I	TGTACA	2 cut(s)	48, 390
Bsp143I	GATC	9 cut(s)	370, 660, 1354, 1681, 1780, 1856, 1948, 1961, 2476
Bsp19I	CCATGG	1 cut(s)	171
Bsp68I	TCGCGA	1 cut(s)	483
BspACI	CCGC	8 cut(s)	241, 247, 262, 517, 680, 1427, 1591, 2611
BspANI	GGCC	3 cut(s)	1237, 2248, 2390
BspCNI	CTCAG	4 cut(s)	764, 1735, 2320, 2485
BspFNI	CGCG	4 cut(s)	126, 249, 483, 519
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	5 cut(s)	498, 515, 1224, 1245, 1782
BspPI	GGATC	5 cut(s)	1689, 1775, 1788, 1943, 1969
BspQI	GCTCTTC	1 cut(s)	940
BspT107I	GGYRCC	1 cut(s)	513
BspTI	CTTAAG	1 cut(s)	1696
BspTNI	GGTCTC	2 cut(s)	1349, 2227
BsrDI	GCAATG	3 cut(s)	561, 1465, 1631
BsrFI	RCCGGY	1 cut(s)	1497
BsrGI	TGTACA	2 cut(s)	48, 390
BsrI	ACTGG	9 cut(s)	235, 1045, 1238, 1272, 1753, 1827, 2262, 2620, 2628
BssAI	RCCGGY	1 cut(s)	1497
BssECI	CCNNGG	7 cut(s)	171, 492, 633, 1314, 1486, 2243, 2453
BssMI	GATC	9 cut(s)	370, 660, 1354, 1681, 1780, 1856, 1948, 1961, 2476
BssSI	CACGAG	2 cut(s)	1676, 2347
BssT1I	CCWWGG	3 cut(s)	171, 492, 2243
Bst2BI	CACGAG	2 cut(s)	1676, 2347
Bst2UI	CCWGG	7 cut(s)	634, 810, 836, 994, 1227, 1316, 1487
Bst4CI	ACNGT	8 cut(s)	1079, 1609, 1651, 1657, 2057, 2090, 2101, 2229
Bst6I	CTCTTC	6 cut(s)	41, 158, 443, 579, 940, 2797
BstAFI	CTTAAG	1 cut(s)	1696
BstAUI	TGTACA	2 cut(s)	48, 390
BstC8I	GCNNGC	7 cut(s)	124, 703, 1185, 1376, 1456, 2460, 2464
BstDEI	CTNAG	8 cut(s)	78, 751, 1715, 1743, 2176, 2250, 2328, 2493
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	604, 1345, 2089
BstFNI	CGCG	4 cut(s)	126, 249, 483, 519
BstH2I	RGCGCY	2 cut(s)	259, 2150
BstHHI	GCGC	5 cut(s)	128, 251, 258, 521, 2149
BstKTI	GATC	9 cut(s)	373, 663, 1357, 1684, 1783, 1859, 1951, 1964, 2479
BstMAI	GTCTC	5 cut(s)	36, 109, 1349, 1803, 2227
BstMBI	GATC	9 cut(s)	370, 660, 1354, 1681, 1780, 1856, 1948, 1961, 2476
BstMCI	CGRYCG	1 cut(s)	1859
BstMWI	GCNNNNNNNGC	6 cut(s)	255, 1229, 1277, 1397, 1521, 2442
BstNI	CCWGG	7 cut(s)	634, 810, 836, 994, 1227, 1316, 1487
BstNSI	RCATGY	3 cut(s)	2310, 2428, 2641
BstPAI	GACNNNNGTC	1 cut(s)	2091
BstSCI	CCNGG	8 cut(s)	59, 632, 808, 834, 992, 1225, 1314, 1485
BstSFI	CTRYAG	2 cut(s)	334, 2097
BstSLI	GKGCMC	1 cut(s)	1101
BstUI	CGCG	4 cut(s)	126, 249, 483, 519
BstV1I	GCAGC	5 cut(s)	94, 563, 1615, 2429, 2792
BstV2I	GAAGAC	4 cut(s)	369, 417, 2073, 2427
BstX2I	RGATCY	5 cut(s)	1354, 1681, 1780, 1961, 2476
BstYI	RGATCY	5 cut(s)	1354, 1681, 1780, 1961, 2476
Bsu36I	CCTNAGG	1 cut(s)	2328
BsuI	GTATCC	2 cut(s)	1934, 2149
BsuRI	GGCC	3 cut(s)	1237, 2248, 2390
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	604, 1345, 2089
BtsI	GCAGTG	1 cut(s)	1565
BtsIMutI	CAGTG	6 cut(s)	1084, 1245, 1297, 1565, 1662, 1760
BtuMI	TCGCGA	1 cut(s)	483
Cac8I	GCNNGC	7 cut(s)	124, 703, 1185, 1376, 1456, 2460, 2464
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	5 cut(s)	128, 251, 258, 521, 2149
Cfr10I	RCCGGY	1 cut(s)	1497
Cfr13I	GGNCC	3 cut(s)	357, 496, 2414
CpoI	CGGWCCG	1 cut(s)	357
CseI	GACGC	1 cut(s)	1820
Csp6I	GTAC	4 cut(s)	49, 391, 2644, 2807
CspAI	ACCGGT	1 cut(s)	1497
CspCI	CAANNNNNGTGG	2 cut(s)	1221, 1256
CspI	CGGWCCG	1 cut(s)	357
CviQI	GTAC	4 cut(s)	49, 391, 2644, 2807
DdeI	CTNAG	8 cut(s)	78, 751, 1715, 1743, 2176, 2250, 2328, 2493
DpnI	GATC	9 cut(s)	372, 662, 1356, 1683, 1782, 1858, 1950, 1963, 2478
DpnII	GATC	9 cut(s)	370, 660, 1354, 1681, 1780, 1856, 1948, 1961, 2476
DraI	TTTAAA	3 cut(s)	594, 978, 1995
DrdI	GACNNNNNNGTC	1 cut(s)	308
DriI	GACNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eam1104I	CTCTTC	6 cut(s)	41, 158, 443, 579, 940, 2797
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EarI	CTCTTC	6 cut(s)	41, 158, 443, 579, 940, 2797
EciI	GGCGGA	1 cut(s)	1442
Eco130I	CCWWGG	3 cut(s)	171, 492, 2243
Eco147I	AGGCCT	2 cut(s)	2248, 2390
Eco24I	GRGCYC	2 cut(s)	726, 1225
Eco31I	GGTCTC	2 cut(s)	1349, 2227
Eco47I	GGWCC	3 cut(s)	357, 496, 2414
Eco47III	AGCGCT	1 cut(s)	2148
Eco57I	CTGAAG	7 cut(s)	483, 522, 889, 1710, 2417, 2439, 2760
Eco81I	CCTNAGG	1 cut(s)	2328
Eco88I	CYCGRG	1 cut(s)	725
EcoO109I	RGGNCCY	1 cut(s)	2414
EcoRI	GAATTC	1 cut(s)	1979
EcoRII	CCWGG	7 cut(s)	632, 808, 834, 992, 1225, 1314, 1485
EcoT14I	CCWWGG	3 cut(s)	171, 492, 2243
EcoT22I	ATGCAT	1 cut(s)	1483
EcoT38I	GRGCYC	2 cut(s)	726, 1225
ErhI	CCWWGG	3 cut(s)	171, 492, 2243
Esp3I	CGTCTC	2 cut(s)	109, 1803
FalI	AAGNNNNNCTT	6 cut(s)	71, 103, 587, 619, 1167, 1199
FaqI	GGGAC	5 cut(s)	223, 236, 467, 482, 758
FauI	CCCGC	2 cut(s)	248, 269
FauNDI	CATATG	1 cut(s)	2785
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	7 cut(s)	83, 517, 552, 681, 1629, 2443, 2781
FokI	GGATG	3 cut(s)	611, 1352, 2096
FriOI	GRGCYC	2 cut(s)	726, 1225
Fsp4HI	GCNGC	7 cut(s)	83, 517, 552, 681, 1629, 2443, 2781
FspBI	CTAG	5 cut(s)	146, 1127, 2411, 2439, 2552
GlaI	GCGC	5 cut(s)	127, 250, 257, 520, 2148
GluI	GCNGC	7 cut(s)	83, 517, 552, 681, 1629, 2443, 2781
GsaI	CCCAGC	2 cut(s)	223, 256
GsuI	CTGGAG	3 cut(s)	218, 1209, 2279
HaeII	RGCGCY	2 cut(s)	259, 2150
HaeIII	GGCC	3 cut(s)	1237, 2248, 2390
HapII	CCGG	5 cut(s)	61, 404, 420, 1138, 1498
HgaI	GACGC	1 cut(s)	1820
HhaI	GCGC	5 cut(s)	128, 251, 258, 521, 2149
Hin6I	GCGC	5 cut(s)	126, 249, 256, 519, 2147
HinP1I	GCGC	5 cut(s)	126, 249, 256, 519, 2147
HincII	GTYRAC	1 cut(s)	1117
HindII	GTYRAC	1 cut(s)	1117
HindIII	AAGCTT	1 cut(s)	1109
HpaII	CCGG	5 cut(s)	61, 404, 420, 1138, 1498
HphI	GGTGA	4 cut(s)	590, 1439, 2153, 2275
Hpy166II	GTNNAC	3 cut(s)	322, 1099, 1117
Hpy8I	GTNNAC	3 cut(s)	322, 1099, 1117
Hpy99I	CGWCG	8 cut(s)	206, 218, 284, 287, 290, 293, 296, 314
HpyCH4III	ACNGT	8 cut(s)	1079, 1609, 1651, 1657, 2057, 2090, 2101, 2229
HpyCH4IV	ACGT	2 cut(s)	294, 963
HpyF10VI	GCNNNNNNNGC	6 cut(s)	255, 1229, 1277, 1397, 1521, 2442
HpyF3I	CTNAG	8 cut(s)	78, 751, 1715, 1743, 2176, 2250, 2328, 2493
HpySE526I	ACGT	2 cut(s)	294, 963
HspAI	GCGC	5 cut(s)	126, 249, 256, 519, 2147
Kzo9I	GATC	9 cut(s)	370, 660, 1354, 1681, 1780, 1856, 1948, 1961, 2476
LguI	GCTCTTC	1 cut(s)	940
LmnI	GCTCC	5 cut(s)	27, 117, 1228, 1249, 1285
Lsp1109I	GCAGC	5 cut(s)	94, 563, 1615, 2429, 2792
LweI	GCATC	2 cut(s)	853, 1387
MaeI	CTAG	5 cut(s)	146, 1127, 2411, 2439, 2552
MaeII	ACGT	2 cut(s)	294, 963
MaeIII	GTNAC	3 cut(s)	1651, 2615, 2681
MalI	GATC	9 cut(s)	372, 662, 1356, 1683, 1782, 1858, 1950, 1963, 2478
MboI	GATC	9 cut(s)	370, 660, 1354, 1681, 1780, 1856, 1948, 1961, 2476
MfeI	CAATTG	1 cut(s)	1917
MflI	RGATCY	5 cut(s)	1354, 1681, 1780, 1961, 2476
MhlI	GDGCHC	3 cut(s)	726, 1101, 1225
MlyI	GAGTC	5 cut(s)	3, 410, 449, 2063, 2443
MmeI	TCCRAC	4 cut(s)	80, 324, 854, 2133
Mph1103I	ATGCAT	1 cut(s)	1483
MroXI	GAANNNNTTC	1 cut(s)	2519
MslI	CAYNNNNRTG	2 cut(s)	849, 2664
MspA1I	CMGCKG	1 cut(s)	2212
MspCI	CTTAAG	1 cut(s)	1696
MspI	CCGG	5 cut(s)	61, 404, 420, 1138, 1498
MspR9I	CCNGG	8 cut(s)	61, 634, 810, 836, 994, 1227, 1316, 1487
MunI	CAATTG	1 cut(s)	1917
MvaI	CCWGG	7 cut(s)	634, 810, 836, 994, 1227, 1316, 1487
MvnI	CGCG	4 cut(s)	126, 249, 483, 519
MwoI	GCNNNNNNNGC	6 cut(s)	255, 1229, 1277, 1397, 1521, 2442
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	171
NdeI	CATATG	1 cut(s)	2785
NdeII	GATC	9 cut(s)	370, 660, 1354, 1681, 1780, 1856, 1948, 1961, 2476
NlaIV	GGNNCC	5 cut(s)	498, 515, 1224, 1245, 1782
NmeAIII	GCCGAG	1 cut(s)	2434
NmuCI	GTSAC	1 cut(s)	2681
NruI	TCGCGA	1 cut(s)	483
NsiI	ATGCAT	1 cut(s)	1483
NspI	RCATGY	3 cut(s)	2310, 2428, 2641
OliI	CACNNNNGTG	1 cut(s)	2664
PagI	TCATGA	1 cut(s)	774
PceI	AGGCCT	2 cut(s)	2248, 2390
PciI	ACATGT	2 cut(s)	2424, 2637
PciSI	GCTCTTC	1 cut(s)	940
PcsI	WCGNNNNNNNCGW	9 cut(s)	174, 198, 210, 279, 285, 288, 291, 297, 1765
PdmI	GAANNNNTTC	1 cut(s)	2519
PflMI	CCANNNNNTGG	2 cut(s)	1093, 1667
PfoI	TCCNGGA	2 cut(s)	808, 834
PinAI	ACCGGT	1 cut(s)	1497
PkrI	GCNGC	7 cut(s)	84, 518, 553, 682, 1630, 2444, 2782
Ple19I	CGATCG	1 cut(s)	1859
PleI	GAGTC	5 cut(s)	3, 410, 449, 2063, 2443
PpsI	GAGTC	5 cut(s)	3, 410, 449, 2063, 2443
PpuMI	RGGWCCY	1 cut(s)	2414
PscI	ACATGT	2 cut(s)	2424, 2637
PshAI	GACNNNNGTC	1 cut(s)	2091
Psp5II	RGGWCCY	1 cut(s)	2414
Psp6I	CCWGG	7 cut(s)	632, 808, 834, 992, 1225, 1314, 1485
PspFI	CCCAGC	2 cut(s)	219, 252
PspGI	CCWGG	7 cut(s)	632, 808, 834, 992, 1225, 1314, 1485
PspN4I	GGNNCC	5 cut(s)	498, 515, 1224, 1245, 1782
PspPI	GGNCC	3 cut(s)	357, 496, 2414
PspPPI	RGGWCCY	1 cut(s)	2414
PsrI	GAACNNNNNNTAC	4 cut(s)	944, 976, 1693, 1725
PsuI	RGATCY	5 cut(s)	1354, 1681, 1780, 1961, 2476
PvuI	CGATCG	1 cut(s)	1859
PvuII	CAGCTG	1 cut(s)	2212
RgaI	GCGATCGC	1 cut(s)	1859
RruI	TCGCGA	1 cut(s)	483
RsaI	GTAC	4 cut(s)	50, 392, 2645, 2808
RsaNI	GTAC	4 cut(s)	49, 391, 2644, 2807
RseI	CAYNNNNRTG	2 cut(s)	849, 2664
Rsr2I	CGGWCCG	1 cut(s)	357
RsrII	CGGWCCG	1 cut(s)	357
SapI	GCTCTTC	1 cut(s)	940
SatI	GCNGC	7 cut(s)	83, 517, 552, 681, 1629, 2443, 2781
Sau3AI	GATC	9 cut(s)	370, 660, 1354, 1681, 1780, 1856, 1948, 1961, 2476
Sau96I	GGNCC	3 cut(s)	357, 496, 2414
SchI	GAGTC	5 cut(s)	3, 410, 449, 2063, 2443
ScrFI	CCNGG	8 cut(s)	61, 634, 810, 836, 994, 1227, 1316, 1487
SduI	GDGCHC	3 cut(s)	726, 1101, 1225
SfaAI	GCGATCGC	1 cut(s)	1859
SfaNI	GCATC	2 cut(s)	853, 1387
SfcI	CTRYAG	2 cut(s)	334, 2097
SgfI	GCGATCGC	1 cut(s)	1859
SinI	GGWCC	3 cut(s)	357, 496, 2414
SmiI	ATTTAAAT	1 cut(s)	1995
SmiMI	CAYNNNNRTG	2 cut(s)	849, 2664
SmlI	CTYRAG	3 cut(s)	982, 1696, 2384
SmoI	CTYRAG	3 cut(s)	982, 1696, 2384
SseBI	AGGCCT	2 cut(s)	2248, 2390
SsiI	CCGC	8 cut(s)	241, 247, 262, 517, 680, 1427, 1591, 2611
SspI	AATATT	1 cut(s)	1436
SspMI	CTAG	5 cut(s)	146, 1127, 2411, 2439, 2552
StuI	AGGCCT	2 cut(s)	2248, 2390
StyD4I	CCNGG	8 cut(s)	59, 632, 808, 834, 992, 1225, 1314, 1485
StyI	CCWWGG	3 cut(s)	171, 492, 2243
SwaI	ATTTAAAT	1 cut(s)	1995
TaaI	ACNGT	8 cut(s)	1079, 1609, 1651, 1657, 2057, 2090, 2101, 2229
TaiI	ACGT	2 cut(s)	297, 966
TaqI	TCGA	3 cut(s)	228, 312, 2632
TaqII	GACCGA	1 cut(s)	374
TatI	WGTACW	2 cut(s)	48, 390
TauI	GCSGC	2 cut(s)	519, 683
TscAI	CASTG	6 cut(s)	1084, 1245, 1297, 1572, 1662, 1760
TseFI	GTSAC	1 cut(s)	2681
TseI	GCWGC	5 cut(s)	82, 551, 1628, 2442, 2780
Tsp45I	GTSAC	1 cut(s)	2681
TspGWI	ACGGA	2 cut(s)	14, 91
TspRI	CASTG	6 cut(s)	1084, 1245, 1297, 1572, 1662, 1760
Van91I	CCANNNNNTGG	2 cut(s)	1093, 1667
Vha464I	CTTAAG	1 cut(s)	1696
VneI	GTGCAC	1 cut(s)	1097
VpaK11BI	GGWCC	3 cut(s)	357, 496, 2414
XapI	RAATTY	3 cut(s)	643, 1979, 2168
XceI	RCATGY	3 cut(s)	2310, 2428, 2641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2581
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	2519
XspI	CTAG	5 cut(s)	146, 1127, 2411, 2439, 2552
Zsp2I	ATGCAT	1 cut(s)	1483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.