Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

15297975 .. 15298967

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0183400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCGACTTCATCATACAACAACGACGCTAATTACAACATATATGTGATGGCCTATAGCGGAGGTTTCCCCGATGATCAAGAGCTTTTGAGTCCTCGTGTCTCGATCTCTTGGAATGTCATCGGAAGCTACAAGTCAGAGAATGTCAATTTCAAGAGGTCGATCGAATACCACAATTCAAGCCACTCATATCATGATGTATTTGCATCAATCGCATCTACCAATGATGATTATATGTCATCTCAATCCCGGGATATAATCTCCAGGATGATAGCTCATATAAACTTCCCCTTCGAATTAGATATGCTAAGCTGGAAACGACGTCCTTTCAATGGCAATAACACGATAAAGCCACTAAACAGCGTTGACGATATAATAAGCCAAATACTTGAAGTTATTAACGGCATGGTTGTTTCGGGACGCAAGAAGGTGGACTTAATTGTCAAAGTTGATAAGCAATATACACTAGCACATGAAGAATATCAAGCAAAGGTTCAGGCCAGTAAAGAGAGGGAATTAACTGAAATTCGCAGGAATCTTGATGCTGTGCTACTAAGGGAGCTGGCTCGTGTACAAAATCAACATCAGGCTGATATGATAAAAAGAGCTTATGCTGAACAATGTAGACGAATTGAAGACGAAATGCGTGCCAATAATATTTCTCAAGAAAGGATCATGGATAATGCAAGGTTCTTGGAGCAAGAGGCTATTAGGGAGTCATTTGATCAAGTAGTGAACAGACCGAGGCCTGCAAGTAAGGCGTCGATCCAGGCACTGGAGAAGTTTGTGTTGGAGGATAGAGACGGTGGTTCGAGTTCGATTTGTGTGATTTGCAGGGAGGAGTTGACTGCTCGTAAAGTCATTCGCATGCCATGCTCCCATATGTTCCATGATGACTGCATTGTAGAATGGTTAAACCACTGGGGTCATACGTGTCCTCTTTGCAAGTTCAAGTTGCCAAAAGAGAGAAGAAACATGGAAGTGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

330

Amino Acids

38.33

Weight (kDa)

6.8

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	274 - 316	6.4e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	275 - 316	2.1e-10	Ring finger domain
zf-C3HC4	PF00097	275 - 315	5.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	275 - 301	5.2e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	275 - 315	1.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	440
AatII	GACGTC	1 cut(s)	325
AccB7I	CCANNNNNTGG	1 cut(s)	775
AccI	GTMKAC	2 cut(s)	5, 625
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	2 cut(s)	680, 760
AcsI	RAATTY	1 cut(s)	525
AcyI	GRCGYC	2 cut(s)	322, 761
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	2 cut(s)	332, 775
AflIII	ACRYGT	1 cut(s)	932
AgsI	TTSAA	6 cut(s)	154, 180, 331, 392, 635, 952
AjnI	CCWGG	2 cut(s)	263, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	773, 805
AluBI	AGCT	6 cut(s)	85, 129, 275, 312, 562, 608
AluI	AGCT	6 cut(s)	85, 129, 275, 312, 562, 608
Alw26I	GTCTC	2 cut(s)	106, 795
AlwI	GGATC	2 cut(s)	680, 760
AlwNI	CAGNNNCTG	1 cut(s)	775
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	3 cut(s)	51, 498, 746
ApoI	RAATTY	1 cut(s)	525
AsuC2I	CCSGG	2 cut(s)	250, 251
AsuII	TTCGAA	1 cut(s)	294
AvaI	CYCGRG	1 cut(s)	249
BauI	CACGAG	2 cut(s)	96, 567
BbsI	GAAGAC	1 cut(s)	642
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	2 cut(s)	265, 770
BclI	TGATCA	2 cut(s)	76, 724
BcnI	CCSGG	2 cut(s)	250, 251
BcoDI	GTCTC	2 cut(s)	106, 795
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	55
BlpI	GCTNAGC	1 cut(s)	308
Bme1390I	CCNGG	4 cut(s)	250, 251, 265, 770
BmeT110I	CYCGRG	1 cut(s)	249
BmrFI	CCNGG	4 cut(s)	250, 251, 265, 770
BmrI	ACTGGG	1 cut(s)	931
BmsI	GCATC	3 cut(s)	215, 224, 532
BmuI	ACTGGG	1 cut(s)	931
BpiI	GAAGAC	1 cut(s)	642
BpmI	CTGGAG	2 cut(s)	247, 797
Bpu1102I	GCTNAGC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	648
BpuMI	CCSGG	2 cut(s)	250, 251
BsaAI	YACGTR	1 cut(s)	933
BsaHI	GRCGYC	2 cut(s)	322, 761
BsaJI	CCNNGG	2 cut(s)	249, 743
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 775
Bse1I	ACTGG	3 cut(s)	501, 780, 926
BseBI	CCWGG	2 cut(s)	265, 770
BseDI	CCNNGG	2 cut(s)	249, 743
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	332, 775
BseNI	ACTGG	3 cut(s)	501, 780, 926
BseRI	GAGGAG	1 cut(s)	854
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	53, 500, 748
BsiEI	CGRYCG	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	332, 775
BsmAI	GTCTC	2 cut(s)	106, 795
BsmBI	CGTCTC	1 cut(s)	795
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	3 cut(s)	53, 500, 748
BsoBI	CYCGRG	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	6 cut(s)	76, 105, 162, 672, 724, 765
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	3 cut(s)	53, 500, 748
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	2 cut(s)	680, 760
BspT104I	TTCGAA	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	3 cut(s)	501, 780, 926
BssECI	CCNNGG	2 cut(s)	249, 743
BssMI	GATC	6 cut(s)	76, 105, 162, 672, 724, 765
BssNI	GRCGYC	2 cut(s)	322, 761
BssSI	CACGAG	2 cut(s)	96, 567
Bst2BI	CACGAG	2 cut(s)	96, 567
Bst2UI	CCWGG	2 cut(s)	265, 770
Bst4CI	ACNGT	1 cut(s)	806
BstACI	GRCGYC	2 cut(s)	322, 761
BstAPI	GCANNNNNTGC	1 cut(s)	873
BstAUI	TGTACA	1 cut(s)	571
BstBAI	YACGTR	1 cut(s)	933
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	4 cut(s)	564, 648, 750, 869
BstDEI	CTNAG	2 cut(s)	308, 554
BstF5I	GGATG	1 cut(s)	273
BstKTI	GATC	6 cut(s)	79, 108, 165, 675, 727, 768
BstMAI	GTCTC	2 cut(s)	106, 795
BstMBI	GATC	6 cut(s)	76, 105, 162, 672, 724, 765
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 758, 873
BstNI	CCWGG	2 cut(s)	265, 770
BstNSI	RCATGY	1 cut(s)	871
BstSCI	CCNGG	4 cut(s)	248, 249, 263, 768
BstSFI	CTRYAG	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	53, 500, 748
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	2 cut(s)	773, 919
Cac8I	GCNNGC	4 cut(s)	564, 648, 750, 869
CaiI	CAGNNNCTG	1 cut(s)	775
CciI	TCATGA	1 cut(s)	193
Cfr9I	CCCGGG	1 cut(s)	249
CseI	GACGC	3 cut(s)	35, 429, 750
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	8 cut(s)	194, 406, 473, 676, 868, 873, 890, 976
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	2 cut(s)	308, 554
DpnI	GATC	6 cut(s)	78, 107, 164, 674, 726, 767
DpnII	GATC	6 cut(s)	76, 105, 162, 672, 724, 765
DrdI	GACNNNNNNGTC	1 cut(s)	440
DseDI	GACNNNNNNGTC	1 cut(s)	440
Eco147I	AGGCCT	1 cut(s)	748
Eco88I	CYCGRG	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	263, 768
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	8 cut(s)	197, 409, 476, 679, 871, 876, 893, 979
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	8 cut(s)	193, 405, 472, 675, 867, 872, 889, 975
FauNDI	CATATG	1 cut(s)	882
FbaI	TGATCA	2 cut(s)	76, 724
FblI	GTMKAC	2 cut(s)	5, 625
FokI	GGATG	1 cut(s)	280
FspBI	CTAG	1 cut(s)	467
GsuI	CTGGAG	2 cut(s)	247, 797
HaeIII	GGCC	3 cut(s)	53, 500, 748
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	3 cut(s)	35, 429, 750
Hin1I	GRCGYC	2 cut(s)	322, 761
Hin1II	CATG	8 cut(s)	197, 409, 476, 679, 871, 876, 893, 979
HincII	GTYRAC	3 cut(s)	6, 367, 846
HindII	GTYRAC	3 cut(s)	6, 367, 846
HinfI	GANTC	3 cut(s)	91, 535, 716
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	7 cut(s)	6, 367, 433, 572, 626, 736, 846
Hpy188I	TCNGA	2 cut(s)	125, 139
Hpy188III	TCNNGA	7 cut(s)	80, 103, 154, 194, 417, 539, 665
Hpy8I	GTNNAC	7 cut(s)	6, 367, 433, 572, 626, 736, 846
Hpy99I	CGWCG	3 cut(s)	29, 324, 766
HpyAV	CCTTC	2 cut(s)	301, 421
HpyCH4III	ACNGT	1 cut(s)	806
HpyCH4IV	ACGT	2 cut(s)	322, 932
HpyCH4V	TGCA	6 cut(s)	206, 686, 752, 834, 900, 945
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 758, 873
HpyF3I	CTNAG	2 cut(s)	308, 554
HpySE526I	ACGT	2 cut(s)	322, 932
Hsp92I	GRCGYC	2 cut(s)	322, 761
Hsp92II	CATG	8 cut(s)	197, 409, 476, 679, 871, 876, 893, 979
Ksp22I	TGATCA	2 cut(s)	76, 724
Kzo9I	GATC	6 cut(s)	76, 105, 162, 672, 724, 765
LmnI	GCTCC	3 cut(s)	559, 697, 881
LweI	GCATC	3 cut(s)	215, 224, 532
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	2 cut(s)	322, 932
MalI	GATC	6 cut(s)	78, 107, 164, 674, 726, 767
MboI	GATC	6 cut(s)	76, 105, 162, 672, 724, 765
MboII	GAAGA	3 cut(s)	488, 647, 981
MluCI	AATT	8 cut(s)	31, 148, 175, 296, 438, 515, 525, 630
MlyI	GAGTC	2 cut(s)	100, 725
MmeI	TCCRAC	1 cut(s)	771
MnlI	CCTC	9 cut(s)	56, 105, 150, 504, 697, 738, 787, 832, 948
MseI	TTAA	4 cut(s)	399, 437, 518, 914
MslI	CAYNNNNRTG	3 cut(s)	44, 866, 980
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	4 cut(s)	250, 251, 265, 770
MvaI	CCWGG	2 cut(s)	265, 770
MwoI	GCNNNNNNNGC	3 cut(s)	212, 758, 873
NciI	CCSGG	2 cut(s)	250, 251
NdeI	CATATG	1 cut(s)	882
NdeII	GATC	6 cut(s)	76, 105, 162, 672, 724, 765
NlaIII	CATG	8 cut(s)	197, 409, 476, 679, 871, 876, 893, 979
NspI	RCATGY	1 cut(s)	871
NspV	TTCGAA	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	871
PagI	TCATGA	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	535
PflMI	CCANNNNNTGG	1 cut(s)	775
PfoI	TCCNGGA	1 cut(s)	263
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	2 cut(s)	99, 724
PpsI	GAGTC	2 cut(s)	99, 724
Ppu21I	YACGTR	1 cut(s)	933
Psp6I	CCWGG	2 cut(s)	263, 768
PspGI	CCWGG	2 cut(s)	263, 768
PstNI	CAGNNNCTG	1 cut(s)	775
PvuI	CGATCG	1 cut(s)	165
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
RseI	CAYNNNNRTG	3 cut(s)	44, 866, 980
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	4 cut(s)	399, 437, 518, 914
Sau3AI	GATC	6 cut(s)	76, 105, 162, 672, 724, 765
SchI	GAGTC	2 cut(s)	100, 725
ScrFI	CCNGG	4 cut(s)	250, 251, 265, 770
SfaNI	GCATC	3 cut(s)	215, 224, 532
SfcI	CTRYAG	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	294
SmaI	CCCGGG	1 cut(s)	251
SmiMI	CAYNNNNRTG	3 cut(s)	44, 866, 980
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SphI	GCATGC	1 cut(s)	871
Sse9I	AATT	8 cut(s)	31, 148, 175, 296, 438, 515, 525, 630
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	1 cut(s)	60
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	1 cut(s)	467
StuI	AGGCCT	1 cut(s)	748
StyD4I	CCNGG	4 cut(s)	248, 249, 263, 768
TaaI	ACNGT	1 cut(s)	806
TaiI	ACGT	2 cut(s)	325, 935
TaqI	TCGA	8 cut(s)	5, 104, 161, 165, 294, 764, 812, 818
TaqII	GACCGA	1 cut(s)	757
TasI	AATT	8 cut(s)	31, 148, 175, 296, 438, 515, 525, 630
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	4 cut(s)	399, 437, 518, 914
Tru9I	TTAA	4 cut(s)	399, 437, 518, 914
TscAI	CASTG	2 cut(s)	780, 926
TspDTI	ATGAA	1 cut(s)	489
TspMI	CCCGGG	1 cut(s)	249
TspRI	CASTG	2 cut(s)	780, 926
Van91I	CCANNNNNTGG	1 cut(s)	775
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	1 cut(s)	871
XmaI	CCCGGG	1 cut(s)	249
XmiI	GTMKAC	2 cut(s)	5, 625
XspI	CTAG	1 cut(s)	467
ZraI	GACGTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.