Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

13662423 .. 13663064

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0087900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAATGCATTTGGTGATTCAAATGCTCTCATCTATTGGCGCTATGCTGATCCATTCTGGAAATTGAAAAGATTTCTCATTGGATCCGAAGCCACACTTAAAAAGAATGCCAGAGTAATTAATGACTTCGTTTACCAACTTATCATGAGCAAAAGGAAATTGATAACAGGGGAAAACTATGTTAATGAAAAGGAGGATCTACTATCGAGGTTCCTAATGGAGAGCGAAAAGGAGCCAGAGGAATTGACTGATACGTATCTAAGGGATATAACTCTGAATTTTATGAGTGCTGGCAAAGATTCTAGTGGAACTACACTCTCGTGGTTCTTCTACATGCTGTGCAAAAACCCTCTCATTCAAGAAAAGGTTGCACAAGAAGTGAGGGATGAAGTTGGGAAAATCAAAATAAACGTTGTACTAAACTGGATAGCTCTATTTGTATTCTATATAGCATTTCAAGACTCGATTAATACTAATGTGTTTGTGATTTTCGGCTTTTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

168

Amino Acids

19.65

Weight (kDa)

5.6

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	13 - 134	3.3e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	411
AclWI	GGATC	4 cut(s)	44, 78, 91, 204
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	1 cut(s)	417
AgsI	TTSAA	4 cut(s)	21, 67, 359, 458
AleI	CACNNNNGTG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
AlwI	GGATC	4 cut(s)	44, 78, 91, 204
ApoI	RAATTY	1 cut(s)	277
AseI	ATTAAT	2 cut(s)	120, 468
AspLEI	GCGC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	83
BauI	CACGAG	1 cut(s)	319
BfaI	CTAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	43
BmiI	GGNNCC	3 cut(s)	85, 212, 234
BsaAI	YACGTR	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	428
Bse8I	GATNNNNATC	1 cut(s)	255
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	428
BsmI	GAATGC	2 cut(s)	10, 112
Bsp143I	GATC	3 cut(s)	49, 83, 196
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	3 cut(s)	85, 212, 234
BspPI	GGATC	4 cut(s)	44, 78, 91, 204
BsrI	ACTGG	1 cut(s)	428
BssMI	GATC	3 cut(s)	49, 83, 196
BssSI	CACGAG	1 cut(s)	319
Bst2BI	CACGAG	1 cut(s)	319
BstBAI	YACGTR	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	52, 86, 199
BstMBI	GATC	3 cut(s)	49, 83, 196
BstNSI	RCATGY	1 cut(s)	337
BstSNI	TACGTA	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	83, 196
BstYI	RGATCY	2 cut(s)	83, 196
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	292
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	2 cut(s)	145, 334
CviJI	RGCY	4 cut(s)	92, 235, 431, 495
CviKI_1	RGCY	4 cut(s)	92, 235, 431, 495
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	51, 85, 198
DpnII	GATC	3 cut(s)	49, 83, 196
Eco105I	TACGTA	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	2 cut(s)	148, 337
FaiI	YATR	8 cut(s)	45, 146, 180, 269, 284, 335, 447, 449
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FatI	CATG	2 cut(s)	144, 333
FokI	GGATG	1 cut(s)	398
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	43
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	148, 337
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	17, 299, 461
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	88, 276
Hpy188III	TCNNGA	4 cut(s)	58, 145, 359, 458
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	254, 411
HpyCH4V	TGCA	3 cut(s)	8, 342, 371
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	2 cut(s)	254, 411
Hsp92II	CATG	2 cut(s)	148, 337
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	49, 83, 196
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	6 cut(s)	43, 124, 153, 249, 276, 409
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	254, 411
MalI	GATC	3 cut(s)	51, 85, 198
MboI	GATC	3 cut(s)	49, 83, 196
MboII	GAAGA	1 cut(s)	319
MflI	RGATCY	2 cut(s)	83, 196
MluCI	AATT	6 cut(s)	62, 117, 158, 242, 277, 502
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	5 cut(s)	187, 201, 232, 360, 375
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	5 cut(s)	99, 120, 183, 468, 505
MslI	CAYNNNNRTG	1 cut(s)	319
Mva1269I	GAATGC	2 cut(s)	10, 112
NdeII	GATC	3 cut(s)	49, 83, 196
NlaIII	CATG	2 cut(s)	148, 337
NlaIV	GGNNCC	3 cut(s)	85, 212, 234
NsiI	ATGCAT	1 cut(s)	10
NspI	RCATGY	1 cut(s)	337
OliI	CACNNNNGTG	1 cut(s)	319
PagI	TCATGA	1 cut(s)	144
PctI	GAATGC	2 cut(s)	10, 112
PfeI	GAWTC	2 cut(s)	17, 299
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
Ppu21I	YACGTR	1 cut(s)	255
PshBI	ATTAAT	2 cut(s)	120, 468
Psp1406I	AACGTT	1 cut(s)	411
PspN4I	GGNNCC	3 cut(s)	85, 212, 234
PsuI	RGATCY	2 cut(s)	83, 196
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	319
SaqAI	TTAA	5 cut(s)	99, 120, 183, 468, 505
Sau3AI	GATC	3 cut(s)	49, 83, 196
SchI	GAGTC	1 cut(s)	455
SetI	ASST	5 cut(s)	212, 257, 369, 414, 433
SmiMI	CAYNNNNRTG	1 cut(s)	319
SnaBI	TACGTA	1 cut(s)	255
Sse9I	AATT	6 cut(s)	62, 117, 158, 242, 277, 502
SspMI	CTAG	1 cut(s)	303
TaiI	ACGT	2 cut(s)	257, 414
TaqI	TCGA	2 cut(s)	206, 464
TasI	AATT	6 cut(s)	62, 117, 158, 242, 277, 502
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	17, 299
Tru1I	TTAA	5 cut(s)	99, 120, 183, 468, 505
Tru9I	TTAA	5 cut(s)	99, 120, 183, 468, 505
TspDTI	ATGAA	3 cut(s)	17, 201, 402
VspI	ATTAAT	2 cut(s)	120, 468
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	1 cut(s)	303
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.