Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

19858478 .. 19860948

Gene Structure 2471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0111400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTTTTGACAGAAGAAGAAATCACGAGGCTGTATAGGGTTCGAAAGACATTGATGCAAATGCTGAAAGATCGGGACTATCTAATTGTTGATCATGATCTCAACATGACAATGTCGCAGTTTAAGAACAAATATGGAGAGAACATGAAAAGGGAGGACCTTACTATCAATAGAAGGAAGAGAGGTGACGAGTCTGATCAGATTTATGTGTTTTTCCCTGACGAACCAAAAGTTGGGGTCAAGACAATGAAGAGTTACATTCAACGCATGAATCAGGAGAATGTGATTAGAGCAATCTTAGTTGCTCAACAAAATCTGACTCCTTTTGCAAAGACCTCCATTAGTGAGATGGGTTCAAAGTACCACTTGGAGATTTTCCAGGAGGCAGAATTGTTGGTGAATATTAAAGAGCATGTTCTAGTTCCTGAGCATCGGGTTCTTACAAATGAGGAAAAGAAGACTTTGCTGGAGAGGTACACTGTGAAAGAAACACAGCTTCCTCGTATTCAGCTGATTGATCCAATTGCAAGATATTACGGGCTTAAGCGTGGACAAGTTGTGAAGATAATCCGGCCAAGTGAGACTGCAGGACGATATGTCACCTACCGTTACGTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

206

Amino Acids

24.53

Weight (kDa)

9.41

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb5_N	PF03871	5 - 90	3.5e-32	RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb5_C	PF01191	133 - 205	2.6e-35	RNA polymerase Rpb5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	233
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	572
AfaI	GTAC	2 cut(s)	362, 476
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflII	CTTAAG	1 cut(s)	542
AgsI	TTSAA	2 cut(s)	263, 357
AhdI	GACNNNNNGTC	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	2 cut(s)	496, 511
AluI	AGCT	2 cut(s)	496, 511
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	1 cut(s)	512
AoxI	GGCC	1 cut(s)	572
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	197, 409, 592
AsuII	TTCGAA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	157
BauI	CACGAG	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	464
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	2 cut(s)	91, 196
BcoDI	GTCTC	1 cut(s)	575
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	542
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	157
BmeRI	GACNNNNNGTC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	45, 439
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	43
BsaBI	GATNNNNATC	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	380
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	575
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	574
Bsp119I	TTCGAA	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	70, 91, 97, 196, 517
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	512
BspT104I	TTCGAA	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	542
BssMI	GATC	5 cut(s)	70, 91, 97, 196, 517
BssSI	CACGAG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	481, 608
Bst6I	CTCTTC	2 cut(s)	173, 245
BstAFI	CTTAAG	1 cut(s)	542
BstBI	TTCGAA	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	298, 426
BstKTI	GATC	5 cut(s)	73, 94, 100, 199, 520
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	5 cut(s)	70, 91, 97, 196, 517
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	585
BstV2I	GAAGAC	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	574
BtsIMutI	CAGTG	1 cut(s)	477
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	361, 475
CviAII	CATG	5 cut(s)	95, 106, 145, 268, 413
CviJI	RGCY	5 cut(s)	31, 496, 511, 541, 574
CviKI_1	RGCY	5 cut(s)	31, 496, 511, 541, 574
CviQI	GTAC	2 cut(s)	361, 475
DdeI	CTNAG	2 cut(s)	298, 426
DpnI	GATC	5 cut(s)	72, 93, 99, 198, 519
DpnII	GATC	5 cut(s)	70, 91, 97, 196, 517
DriI	GACNNNNNGTC	1 cut(s)	596
EaeI	YGGCCR	1 cut(s)	572
Eam1104I	CTCTTC	2 cut(s)	173, 245
Eam1105I	GACNNNNNGTC	1 cut(s)	596
EarI	CTCTTC	2 cut(s)	173, 245
Eco47I	GGWCC	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	378
FaeI	CATG	5 cut(s)	98, 109, 148, 271, 416
FaiI	YATR	9 cut(s)	36, 96, 107, 135, 146, 207, 269, 414, 597
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	5 cut(s)	94, 105, 144, 267, 412
FbaI	TGATCA	2 cut(s)	91, 196
FspBI	CTAG	1 cut(s)	419
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	1 cut(s)	571
Hin1II	CATG	5 cut(s)	98, 109, 148, 271, 416
HinfI	GANTC	3 cut(s)	191, 271, 319
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	3 cut(s)	197, 409, 592
Hpy166II	GTNNAC	2 cut(s)	477, 551
Hpy188I	TCNGA	3 cut(s)	196, 201, 318
Hpy188III	TCNNGA	6 cut(s)	25, 74, 95, 241, 275, 425
Hpy8I	GTNNAC	2 cut(s)	477, 551
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	2 cut(s)	481, 608
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	4 cut(s)	58, 329, 527, 587
HpyF3I	CTNAG	2 cut(s)	298, 426
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	5 cut(s)	98, 109, 148, 271, 416
Ksp22I	TGATCA	2 cut(s)	91, 196
Kzo9I	GATC	5 cut(s)	70, 91, 97, 196, 517
LpnPI	CCDG	8 cut(s)	231, 260, 365, 392, 438, 452, 573, 584
LweI	GCATC	2 cut(s)	45, 439
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	4 cut(s)	185, 254, 598, 608
MalI	GATC	5 cut(s)	72, 93, 99, 198, 519
MboI	GATC	5 cut(s)	70, 91, 97, 196, 517
MboII	GAAGA	6 cut(s)	26, 29, 190, 262, 469, 574
MfeI	CAATTG	1 cut(s)	522
MluCI	AATT	3 cut(s)	84, 389, 522
MlyI	GAGTC	2 cut(s)	200, 313
MnlI	CCTC	8 cut(s)	21, 148, 176, 346, 376, 442, 465, 510
MseI	TTAA	3 cut(s)	123, 405, 543
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	511
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	380
NdeII	GATC	5 cut(s)	70, 91, 97, 196, 517
NlaIII	CATG	5 cut(s)	98, 109, 148, 271, 416
NmuCI	GTSAC	2 cut(s)	185, 598
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	43
PagI	TCATGA	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	378
PleI	GAGTC	2 cut(s)	199, 313
PpsI	GAGTC	2 cut(s)	199, 313
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	157
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	2 cut(s)	362, 476
RsaNI	GTAC	2 cut(s)	361, 475
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	123, 405, 543
Sau3AI	GATC	5 cut(s)	70, 91, 97, 196, 517
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	2 cut(s)	200, 313
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	8 cut(s)	162, 187, 338, 476, 498, 513, 605, 615
SfaNI	GCATC	2 cut(s)	45, 439
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	43
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	3 cut(s)	84, 389, 522
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	481, 608
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	1 cut(s)	43
TasI	AATT	3 cut(s)	84, 389, 522
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	3 cut(s)	123, 405, 543
Tru9I	TTAA	3 cut(s)	123, 405, 543
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	185, 598
Tsp45I	GTSAC	2 cut(s)	185, 598
TspDTI	ATGAA	3 cut(s)	161, 263, 284
TspRI	CASTG	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	233
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.