Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

6459585 .. 6460447

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0039300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACCCAAGAGCCACGAACTCTGCAACTAATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

257

Amino Acids

27.9

Weight (kDa)

5.13

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	48 - 109	1e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	642
AccB7I	CCANNNNNTGG	1 cut(s)	467
AccIII	TCCGGA	1 cut(s)	758
AciI	CCGC	2 cut(s)	47, 708
AclI	AACGTT	1 cut(s)	729
AclWI	GGATC	7 cut(s)	195, 384, 432, 445, 465, 478, 513
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	2 cut(s)	145, 382
AfeI	AGCGCT	1 cut(s)	679
AfiI	CCNNNNNNNGG	2 cut(s)	467, 629
AgsI	TTSAA	1 cut(s)	605
AhlI	ACTAGT	2 cut(s)	368, 497
AjnI	CCWGG	2 cut(s)	146, 594
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	6 cut(s)	37, 107, 253, 464, 742, 764
AluI	AGCT	6 cut(s)	37, 107, 253, 464, 742, 764
Alw21I	GWGCWC	3 cut(s)	39, 630, 744
Alw26I	GTCTC	1 cut(s)	251
Alw44I	GTGCAC	1 cut(s)	626
AlwI	GGATC	7 cut(s)	195, 384, 432, 445, 465, 478, 513
Ama87I	CYCGRG	1 cut(s)	315
Aor13HI	TCCGGA	1 cut(s)	758
Aor51HI	AGCGCT	1 cut(s)	679
AoxI	GGCC	1 cut(s)	458
ApaLI	GTGCAC	1 cut(s)	626
ApeKI	GCWGC	3 cut(s)	104, 347, 764
ArsI	GACNNNNNNTTYG	4 cut(s)	437, 469, 470, 502
Asp700I	GAANNNNTTC	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	680
AspS9I	GGNCC	3 cut(s)	411, 458, 492
AsuHPI	GGTGA	1 cut(s)	584
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	411, 492
BaeGI	GKGCMC	3 cut(s)	218, 360, 630
BamHI	GGATCC	2 cut(s)	437, 470
BanII	GRGCYC	3 cut(s)	39, 316, 744
BauI	CACGAG	1 cut(s)	236
Bbv12I	GWGCWC	3 cut(s)	39, 630, 744
BbvI	GCAGC	3 cut(s)	116, 334, 751
BccI	CCATC	3 cut(s)	449, 506, 763
BceAI	ACGGC	2 cut(s)	126, 646
BciT130I	CCWGG	2 cut(s)	148, 596
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	2 cut(s)	368, 497
BfaI	CTAG	3 cut(s)	369, 498, 772
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	681
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	3 cut(s)	105, 348, 765
BlpI	GCTNAGC	1 cut(s)	743
BlsI	GCNGC	3 cut(s)	106, 349, 766
Bme1390I	CCNGG	2 cut(s)	148, 596
Bme18I	GGWCC	2 cut(s)	411, 492
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	411, 458, 492
BmiI	GGNNCC	7 cut(s)	60, 299, 412, 439, 472, 493, 541
BmrFI	CCNGG	2 cut(s)	148, 596
BpmI	CTGGAG	4 cut(s)	147, 233, 336, 576
Bpu10I	CCTNAGC	1 cut(s)	703
Bpu1102I	GCTNAGC	1 cut(s)	743
BpuEI	CTTGAG	2 cut(s)	167, 758
BsaHI	GRCGYC	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	666
BsaWI	WCCGGW	1 cut(s)	758
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 629
Bse1I	ACTGG	6 cut(s)	259, 353, 388, 421, 430, 559
BseAI	TCCGGA	1 cut(s)	758
BseBI	CCWGG	2 cut(s)	148, 596
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	2 cut(s)	566, 755
BseLI	CCNNNNNNNGG	2 cut(s)	467, 629
BseMII	CTCAG	2 cut(s)	717, 757
BseNI	ACTGG	6 cut(s)	259, 353, 388, 421, 430, 559
BseRI	GAGGAG	3 cut(s)	98, 597, 600
BseSI	GKGCMC	3 cut(s)	218, 360, 630
BseXI	GCAGC	3 cut(s)	116, 334, 751
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	3 cut(s)	39, 630, 744
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	759
BslI	CCNNNNNNNGG	2 cut(s)	467, 629
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	315
Bsp1286I	GDGCHC	6 cut(s)	39, 218, 316, 360, 630, 744
Bsp13I	TCCGGA	1 cut(s)	758
Bsp143I	GATC	9 cut(s)	187, 240, 389, 397, 437, 470, 518, 526, 589
Bsp1720I	GCTNAGC	1 cut(s)	743
BspACI	CCGC	2 cut(s)	47, 708
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	2 cut(s)	716, 756
BspEI	TCCGGA	1 cut(s)	758
BspLI	GGNNCC	7 cut(s)	60, 299, 412, 439, 472, 493, 541
BspPI	GGATC	7 cut(s)	195, 384, 432, 445, 465, 478, 513
BsrI	ACTGG	6 cut(s)	259, 353, 388, 421, 430, 559
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	9 cut(s)	187, 240, 389, 397, 437, 470, 518, 526, 589
BssNI	GRCGYC	1 cut(s)	639
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	148, 596
Bst4CI	ACNGT	1 cut(s)	719
Bst6I	CTCTTC	1 cut(s)	615
BstACI	GRCGYC	1 cut(s)	639
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	703, 743
BstEII	GGTNACC	2 cut(s)	647, 710
BstF5I	GGATG	2 cut(s)	566, 755
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	9 cut(s)	190, 243, 392, 400, 440, 473, 521, 529, 592
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	9 cut(s)	187, 240, 389, 397, 437, 470, 518, 526, 589
BstNI	CCWGG	2 cut(s)	148, 596
BstNSI	RCATGY	1 cut(s)	272
BstPI	GGTNACC	2 cut(s)	647, 710
BstSCI	CCNGG	2 cut(s)	146, 594
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	3 cut(s)	218, 360, 630
BstV1I	GCAGC	3 cut(s)	116, 334, 751
BstX2I	RGATCY	6 cut(s)	187, 240, 389, 437, 470, 518
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	6 cut(s)	187, 240, 389, 437, 470, 518
BsuRI	GGCC	1 cut(s)	460
BtsCI	GGATG	2 cut(s)	566, 755
BtsIMutI	CAGTG	3 cut(s)	360, 414, 724
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	680
Cfr13I	GGNCC	3 cut(s)	411, 458, 492
CsiI	ACCWGGT	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	144, 381
CviAII	CATG	3 cut(s)	124, 269, 361
CviQI	GTAC	2 cut(s)	144, 381
DdeI	CTNAG	2 cut(s)	703, 743
DpnI	GATC	9 cut(s)	189, 242, 391, 399, 439, 472, 520, 528, 591
DpnII	GATC	9 cut(s)	187, 240, 389, 397, 437, 470, 518, 526, 589
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Ecl136II	GAGCTC	2 cut(s)	37, 742
Eco24I	GRGCYC	3 cut(s)	39, 316, 744
Eco47I	GGWCC	2 cut(s)	411, 492
Eco47III	AGCGCT	1 cut(s)	679
Eco53kI	GAGCTC	2 cut(s)	37, 742
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	315
Eco91I	GGTNACC	2 cut(s)	647, 710
EcoICRI	GAGCTC	2 cut(s)	37, 742
EcoO65I	GGTNACC	2 cut(s)	647, 710
EcoRII	CCWGG	2 cut(s)	146, 594
EcoT38I	GRGCYC	3 cut(s)	39, 316, 744
FaeI	CATG	3 cut(s)	127, 272, 364
FaiI	YATR	5 cut(s)	125, 198, 264, 270, 362
FatI	CATG	3 cut(s)	123, 268, 360
FauI	CCCGC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	105, 348, 765
FokI	GGATG	2 cut(s)	553, 742
FriOI	GRGCYC	3 cut(s)	39, 316, 744
Fsp4HI	GCNGC	3 cut(s)	105, 348, 765
FspBI	CTAG	3 cut(s)	369, 498, 772
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	3 cut(s)	105, 348, 765
GsuI	CTGGAG	4 cut(s)	147, 233, 336, 576
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	759
HhaI	GCGC	1 cut(s)	680
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	3 cut(s)	127, 272, 364
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HinfI	GANTC	3 cut(s)	154, 177, 232
HpaII	CCGG	1 cut(s)	759
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	3 cut(s)	414, 495, 628
Hpy188I	TCNGA	1 cut(s)	667
Hpy188III	TCNNGA	6 cut(s)	164, 236, 301, 317, 737, 759
Hpy8I	GTNNAC	3 cut(s)	414, 495, 628
HpyAV	CCTTC	2 cut(s)	649, 665
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	3 cut(s)	306, 639, 729
HpyCH4V	TGCA	3 cut(s)	25, 574, 628
HpyF3I	CTNAG	2 cut(s)	703, 743
HpySE526I	ACGT	3 cut(s)	306, 639, 729
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	3 cut(s)	127, 272, 364
HspAI	GCGC	1 cut(s)	678
Kpn2I	TCCGGA	1 cut(s)	758
Kzo9I	GATC	9 cut(s)	187, 240, 389, 397, 437, 470, 518, 526, 589
LmnI	GCTCC	4 cut(s)	34, 42, 355, 761
Lsp1109I	GCAGC	3 cut(s)	116, 334, 751
MabI	ACCWGGT	1 cut(s)	146
MaeI	CTAG	3 cut(s)	369, 498, 772
MaeII	ACGT	3 cut(s)	306, 639, 729
MaeIII	GTNAC	3 cut(s)	647, 686, 710
MalI	GATC	9 cut(s)	189, 242, 391, 399, 439, 472, 520, 528, 591
MboI	GATC	9 cut(s)	187, 240, 389, 397, 437, 470, 518, 526, 589
MboII	GAAGA	1 cut(s)	602
MflI	RGATCY	6 cut(s)	187, 240, 389, 437, 470, 518
MhlI	GDGCHC	6 cut(s)	39, 218, 316, 360, 630, 744
MluCI	AATT	3 cut(s)	403, 451, 484
MroI	TCCGGA	1 cut(s)	758
MroXI	GAANNNNTTC	1 cut(s)	370
MseI	TTAA	1 cut(s)	210
MspA1I	CMGCKG	3 cut(s)	107, 253, 464
MspI	CCGG	1 cut(s)	759
MspR9I	CCNGG	2 cut(s)	148, 596
MvaI	CCWGG	2 cut(s)	148, 596
NdeII	GATC	9 cut(s)	187, 240, 389, 397, 437, 470, 518, 526, 589
NlaIII	CATG	3 cut(s)	127, 272, 364
NlaIV	GGNNCC	7 cut(s)	60, 299, 412, 439, 472, 493, 541
NspI	RCATGY	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	154, 177, 232
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	3 cut(s)	106, 349, 766
Psp124BI	GAGCTC	2 cut(s)	39, 744
Psp1406I	AACGTT	1 cut(s)	729
Psp6I	CCWGG	2 cut(s)	146, 594
PspEI	GGTNACC	2 cut(s)	647, 710
PspGI	CCWGG	2 cut(s)	146, 594
PspN4I	GGNNCC	7 cut(s)	60, 299, 412, 439, 472, 493, 541
PspPI	GGNCC	3 cut(s)	411, 458, 492
PsuI	RGATCY	6 cut(s)	187, 240, 389, 437, 470, 518
PvuII	CAGCTG	3 cut(s)	107, 253, 464
RsaI	GTAC	2 cut(s)	145, 382
RsaNI	GTAC	2 cut(s)	144, 381
SacI	GAGCTC	2 cut(s)	39, 744
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	3 cut(s)	105, 348, 765
Sau3AI	GATC	9 cut(s)	187, 240, 389, 397, 437, 470, 518, 526, 589
Sau96I	GGNCC	3 cut(s)	411, 458, 492
ScrFI	CCNGG	2 cut(s)	148, 596
SduI	GDGCHC	6 cut(s)	39, 218, 316, 360, 630, 744
SexAI	ACCWGGT	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	411, 492
SlaI	CTCGAG	1 cut(s)	315
SmlI	CTYRAG	3 cut(s)	182, 315, 737
SmoI	CTYRAG	3 cut(s)	182, 315, 737
SpeI	ACTAGT	2 cut(s)	368, 497
Sse9I	AATT	3 cut(s)	403, 451, 484
SsiI	CCGC	2 cut(s)	47, 708
SspMI	CTAG	3 cut(s)	369, 498, 772
SstI	GAGCTC	2 cut(s)	39, 744
StyD4I	CCNGG	2 cut(s)	146, 594
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	3 cut(s)	309, 642, 732
TaqI	TCGA	2 cut(s)	316, 444
TasI	AATT	3 cut(s)	403, 451, 484
TfiI	GAWTC	3 cut(s)	154, 177, 232
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	3 cut(s)	360, 421, 724
TseI	GCWGC	3 cut(s)	104, 347, 764
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	3 cut(s)	360, 421, 724
Van91I	CCANNNNNTGG	1 cut(s)	467
VneI	GTGCAC	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	411, 492
XceI	RCATGY	1 cut(s)	272
XhoI	CTCGAG	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	370
XspI	CTAG	3 cut(s)	369, 498, 772
ZraI	GACGTC	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.