Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 191 |
| AclWI | GGATC | 2 cut(s) | 48, 94 |
| AcsI | RAATTY | 1 cut(s) | 188 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AgsI | TTSAA | 3 cut(s) | 152, 165, 187 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 179, 211 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 254, 286 |
| AluBI | AGCT | 1 cut(s) | 141 |
| AluI | AGCT | 1 cut(s) | 141 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| AlwI | GGATC | 2 cut(s) | 48, 94 |
| ApoI | RAATTY | 1 cut(s) | 188 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 173, 205 |
| AsuC2I | CCSGG | 1 cut(s) | 86 |
| AxyI | CCTNAGG | 1 cut(s) | 128 |
| BclI | TGATCA | 1 cut(s) | 294 |
| BcnI | CCSGG | 1 cut(s) | 86 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfaI | CTAG | 3 cut(s) | 35, 236, 302 |
| BfuAI | ACCTGC | 1 cut(s) | 191 |
| Bme1390I | CCNGG | 1 cut(s) | 86 |
| BmrFI | CCNGG | 1 cut(s) | 86 |
| BpuMI | CCSGG | 1 cut(s) | 86 |
| Bse21I | CCTNAGG | 1 cut(s) | 128 |
| Bse3DI | GCAATG | 1 cut(s) | 103 |
| BseGI | GGATG | 2 cut(s) | 268, 318 |
| BseMI | GCAATG | 1 cut(s) | 103 |
| BseMII | CTCAG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 86 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| Bsp143I | GATC | 3 cut(s) | 40, 99, 294 |
| BspCNI | CTCAG | 1 cut(s) | 120 |
| BspMI | ACCTGC | 1 cut(s) | 191 |
| BspPI | GGATC | 2 cut(s) | 48, 94 |
| BsrDI | GCAATG | 1 cut(s) | 103 |
| BssMI | GATC | 3 cut(s) | 40, 99, 294 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 245 |
| BstDEI | CTNAG | 1 cut(s) | 128 |
| BstF5I | GGATG | 2 cut(s) | 268, 318 |
| BstKTI | GATC | 3 cut(s) | 43, 102, 297 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 3 cut(s) | 40, 99, 294 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 245 |
| BstSCI | CCNGG | 1 cut(s) | 84 |
| BstX2I | RGATCY | 2 cut(s) | 40, 99 |
| BstYI | RGATCY | 2 cut(s) | 40, 99 |
| Bsu36I | CCTNAGG | 1 cut(s) | 128 |
| BtsCI | GGATG | 2 cut(s) | 268, 318 |
| BveI | ACCTGC | 1 cut(s) | 191 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 1 cut(s) | 28 |
| CviJI | RGCY | 2 cut(s) | 134, 141 |
| CviKI_1 | RGCY | 2 cut(s) | 134, 141 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 1 cut(s) | 128 |
| DpnI | GATC | 3 cut(s) | 42, 101, 296 |
| DpnII | GATC | 3 cut(s) | 40, 99, 294 |
| Eco81I | CCTNAGG | 1 cut(s) | 128 |
| FaeI | CATG | 1 cut(s) | 31 |
| FaiI | YATR | 4 cut(s) | 29, 72, 74, 93 |
| FatI | CATG | 1 cut(s) | 27 |
| FauNDI | CATATG | 1 cut(s) | 72 |
| FbaI | TGATCA | 1 cut(s) | 294 |
| FokI | GGATG | 1 cut(s) | 275 |
| FspBI | CTAG | 3 cut(s) | 35, 236, 302 |
| HapII | CCGG | 1 cut(s) | 86 |
| Hin1II | CATG | 1 cut(s) | 31 |
| HindIII | AAGCTT | 1 cut(s) | 139 |
| HpaII | CCGG | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 1 cut(s) | 181 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 299 |
| Hpy188III | TCNNGA | 1 cut(s) | 127 |
| Hpy8I | GTNNAC | 1 cut(s) | 181 |
| HpyAV | CCTTC | 1 cut(s) | 312 |
| HpyCH4IV | ACGT | 1 cut(s) | 167 |
| HpyCH4V | TGCA | 2 cut(s) | 248, 254 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 245 |
| HpyF3I | CTNAG | 1 cut(s) | 128 |
| HpySE526I | ACGT | 1 cut(s) | 167 |
| Hsp92II | CATG | 1 cut(s) | 31 |
| Ksp22I | TGATCA | 1 cut(s) | 294 |
| Kzo9I | GATC | 3 cut(s) | 40, 99, 294 |
| LpnPI | CCDG | 4 cut(s) | 8, 99, 140, 186 |
| MaeI | CTAG | 3 cut(s) | 35, 236, 302 |
| MaeII | ACGT | 1 cut(s) | 167 |
| MalI | GATC | 3 cut(s) | 42, 101, 296 |
| MboI | GATC | 3 cut(s) | 40, 99, 294 |
| MboII | GAAGA | 1 cut(s) | 185 |
| MfeI | CAATTG | 1 cut(s) | 249 |
| MflI | RGATCY | 2 cut(s) | 40, 99 |
| MluCI | AATT | 3 cut(s) | 152, 188, 249 |
| MmeI | TCCRAC | 1 cut(s) | 265 |
| MnlI | CCTC | 2 cut(s) | 69, 123 |
| MseI | TTAA | 1 cut(s) | 137 |
| MspI | CCGG | 1 cut(s) | 86 |
| MspR9I | CCNGG | 1 cut(s) | 86 |
| MunI | CAATTG | 1 cut(s) | 249 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 245 |
| NciI | CCSGG | 1 cut(s) | 86 |
| NdeI | CATATG | 1 cut(s) | 72 |
| NdeII | GATC | 3 cut(s) | 40, 99, 294 |
| NlaIII | CATG | 1 cut(s) | 31 |
| PfoI | TCCNGGA | 1 cut(s) | 84 |
| PsuI | RGATCY | 2 cut(s) | 40, 99 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| SaqAI | TTAA | 1 cut(s) | 137 |
| Sau3AI | GATC | 3 cut(s) | 40, 99, 294 |
| ScrFI | CCNGG | 1 cut(s) | 86 |
| SetI | ASST | 7 cut(s) | 27, 36, 143, 170, 205, 260, 323 |
| Sse9I | AATT | 3 cut(s) | 152, 188, 249 |
| SspMI | CTAG | 3 cut(s) | 35, 236, 302 |
| StyD4I | CCNGG | 1 cut(s) | 84 |
| TaiI | ACGT | 1 cut(s) | 170 |
| TasI | AATT | 3 cut(s) | 152, 188, 249 |
| Tru1I | TTAA | 1 cut(s) | 137 |
| Tru9I | TTAA | 1 cut(s) | 137 |
| TspDTI | ATGAA | 2 cut(s) | 59, 262 |
| XapI | RAATTY | 1 cut(s) | 188 |
| XspI | CTAG | 3 cut(s) | 35, 236, 302 |