Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

68661905 .. 68664618

Gene Structure 2714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0560900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGCTGCCGAGCTAGAGTGGAATATAGGGTAGCGGAGGACCTTAATTCCATCAAGTCTATGCTATTGGCTATTGCTTCGAGTTCAAGCTGGATATACGTTAATGATTTAAAATTGACATTTCGTTGCAGCAATTACCATCTCCCTTGCATAATGTGGCTTGCCTTCCAGACTGCGAAATTGTTGTATTCAACATTGCCAAAGTGGAACTTCAGACATCCCAAAAACAATTTTTTCCCACCAACTCTGAGTTGTGGTCATGGGAAACCTTCAGTGAAGACATTTCTTCATGGACAGTTGAACATCACTATAGACCCCAATGATTATCTACGGTACACCACCAGTGTCGACATAAGTCCATCTGAATCATTTCTGTGTGGTGGTAAGCATCCAATTCTCACCGTGTTGTCAGCTGGGAACGCTATGCATGTCTTTGTCAATGACCAGCTCTCAGGATCAACTTATGGGACTCTGCAAGACCAGAGATTCACTTTTACAGGAGATGTAAACATGCATGTTGGTGTGAATAAATTTTCGCTTCTAAGTGTAGCTGTTGGATTGCCGGCTTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTCAGAGAAGCAGCTGCAGTTTTCCAGCACGCTCAAGTATACGACTCTGACAAGAAAATTGTCAAGCATATGAGACCCATACCACAAGAGCTTGTGGAGTCCCTTGATGGAGAACTTGATTTCCTTGGATCATATATAAGGAAGCTGAGGAGTTTGATTATTAGAATGGAGCAAAGGTGGTTGTTGTTTATGGTGGAGCGCCAATGGATTGTGAAACTGGTACAGCAGTACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

286

Amino Acids

32.66

Weight (kDa)

9.22

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	348, 663
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	2 cut(s)	463, 760
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	3 cut(s)	196, 255, 627
AfaI	GTAC	3 cut(s)	335, 846, 854
AgsI	TTSAA	4 cut(s)	87, 192, 301, 580
AloI	GAACNNNNNNTCC	2 cut(s)	729, 761
AluBI	AGCT	8 cut(s)	14, 90, 413, 448, 551, 638, 715, 769
AluI	AGCT	8 cut(s)	14, 90, 413, 448, 551, 638, 715, 769
Alw26I	GTCTC	1 cut(s)	691
AlwI	GGATC	2 cut(s)	463, 760
ApeKI	GCWGC	4 cut(s)	6, 129, 635, 638
ApoI	RAATTY	1 cut(s)	530
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	825
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	40
BaeI	ACNNNNGTAYC	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	284
BbvCI	CCTCAGC	1 cut(s)	770
BbvI	GCAGC	3 cut(s)	141, 625, 647
BccI	CCATC	4 cut(s)	59, 147, 367, 725
BcoDI	GTCTC	1 cut(s)	691
BfaI	CTAG	2 cut(s)	15, 859
BfmI	CTRYAG	2 cut(s)	309, 639
BfoI	RGCGCY	1 cut(s)	826
BglII	AGATCT	1 cut(s)	620
BisI	GCNGC	4 cut(s)	7, 130, 636, 639
BlsI	GCNGC	4 cut(s)	8, 131, 637, 640
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	397
BoxI	GACNNNNGTC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	748
BsaXI	ACNNNNNCTCC	2 cut(s)	785, 815
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	342, 846
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	748
BseGI	GGATG	2 cut(s)	217, 388
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	3 cut(s)	239, 465, 761
BseNI	ACTGG	2 cut(s)	342, 846
BseRI	GAGGAG	1 cut(s)	787
BseXI	GCAGC	3 cut(s)	141, 625, 647
BseYI	CCCAGC	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	481, 709
BsmAI	GTCTC	1 cut(s)	691
BsmFI	GGGAC	2 cut(s)	481, 709
Bso31I	GGTCTC	1 cut(s)	691
Bsp143I	GATC	3 cut(s)	455, 620, 752
BspACI	CCGC	1 cut(s)	35
BspCNI	CTCAG	3 cut(s)	240, 464, 762
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	2 cut(s)	463, 760
BspTNI	GGTCTC	1 cut(s)	691
BsrDI	GCAATG	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	342, 846
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	1 cut(s)	748
BssMI	GATC	3 cut(s)	455, 620, 752
BssNAI	GTATAC	1 cut(s)	664
BssT1I	CCWWGG	1 cut(s)	748
Bst1107I	GTATAC	1 cut(s)	664
Bst4CI	ACNGT	3 cut(s)	297, 333, 403
BstC8I	GCNNGC	3 cut(s)	162, 564, 654
BstDEI	CTNAG	4 cut(s)	248, 451, 542, 770
BstF5I	GGATG	2 cut(s)	217, 388
BstH2I	RGCGCY	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	3 cut(s)	458, 623, 755
BstMAI	GTCTC	1 cut(s)	691
BstMBI	GATC	3 cut(s)	455, 620, 752
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNSI	RCATGY	3 cut(s)	431, 514, 518
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSFI	CTRYAG	2 cut(s)	309, 639
BstV1I	GCAGC	3 cut(s)	141, 625, 647
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
BstZ17I	GTATAC	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	217, 388
BtsIMutI	CAGTG	2 cut(s)	279, 349
Cac8I	GCNNGC	3 cut(s)	162, 564, 654
CfoI	GCGC	1 cut(s)	825
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	3 cut(s)	334, 845, 853
CviAII	CATG	5 cut(s)	260, 290, 428, 511, 515
CviQI	GTAC	3 cut(s)	334, 845, 853
DdeI	CTNAG	4 cut(s)	248, 451, 542, 770
DpnI	GATC	3 cut(s)	457, 622, 754
DpnII	GATC	3 cut(s)	455, 620, 752
DraI	TTTAAA	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	748
Eco31I	GGTCTC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	196, 255, 627
EcoO109I	RGGNCCY	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	748
EcoT22I	ATGCAT	2 cut(s)	429, 516
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	5 cut(s)	263, 293, 431, 514, 518
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	2 cut(s)	481, 709
FatI	CATG	5 cut(s)	259, 289, 427, 510, 514
FauNDI	CATATG	1 cut(s)	693
FblI	GTMKAC	2 cut(s)	348, 663
Fnu4HI	GCNGC	4 cut(s)	7, 130, 636, 639
FokI	GGATG	2 cut(s)	204, 375
Fsp4HI	GCNGC	4 cut(s)	7, 130, 636, 639
FspBI	CTAG	2 cut(s)	15, 859
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	4 cut(s)	7, 130, 636, 639
GsaI	CCCAGC	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	826
HapII	CCGG	1 cut(s)	563
HhaI	GCGC	1 cut(s)	825
Hin1II	CATG	5 cut(s)	263, 293, 431, 514, 518
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	5 cut(s)	365, 469, 486, 668, 722
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	5 cut(s)	336, 349, 508, 664, 855
Hpy188I	TCNGA	5 cut(s)	215, 249, 364, 629, 673
Hpy188III	TCNNGA	2 cut(s)	169, 453
Hpy8I	GTNNAC	5 cut(s)	336, 349, 508, 664, 855
HpyAV	CCTTC	3 cut(s)	175, 279, 583
HpyCH4III	ACNGT	3 cut(s)	297, 333, 403
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	7 cut(s)	129, 150, 427, 475, 514, 586, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	4 cut(s)	248, 451, 542, 770
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	263, 293, 431, 514, 518
HspAI	GCGC	1 cut(s)	823
KroI	GCCGGC	1 cut(s)	562
KroNI	GCCGGC	1 cut(s)	564
Kzo9I	GATC	3 cut(s)	455, 620, 752
LmnI	GCTCC	2 cut(s)	793, 820
Lsp1109I	GCAGC	3 cut(s)	141, 625, 647
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	15, 859
MaeII	ACGT	1 cut(s)	99
MalI	GATC	3 cut(s)	457, 622, 754
MboI	GATC	3 cut(s)	455, 620, 752
MboII	GAAGA	3 cut(s)	278, 289, 620
MflI	RGATCY	1 cut(s)	620
MluCI	AATT	9 cut(s)	46, 113, 133, 179, 229, 393, 530, 581, 681
MlyI	GAGTC	3 cut(s)	463, 662, 731
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	2 cut(s)	31, 765
Mph1103I	ATGCAT	2 cut(s)	429, 516
MroNI	GCCGGC	1 cut(s)	562
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	3 cut(s)	45, 102, 110
MslI	CAYNNNNRTG	2 cut(s)	373, 519
MspA1I	CMGCKG	2 cut(s)	413, 638
MspI	CCGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	1 cut(s)	419
NaeI	GCCGGC	1 cut(s)	564
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	3 cut(s)	455, 620, 752
NgoMIV	GCCGGC	1 cut(s)	562
NlaIII	CATG	5 cut(s)	263, 293, 431, 514, 518
NmeAIII	GCCGAG	1 cut(s)	35
NsiI	ATGCAT	2 cut(s)	429, 516
NspI	RCATGY	3 cut(s)	431, 514, 518
PdiI	GCCGGC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	365, 486
PkrI	GCNGC	4 cut(s)	8, 131, 637, 640
PleI	GAGTC	3 cut(s)	463, 662, 730
PpsI	GAGTC	3 cut(s)	463, 662, 730
PpuMI	RGGWCCY	1 cut(s)	40
PshAI	GACNNNNGTC	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	413
PspPI	GGNCC	1 cut(s)	40
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	620
PvuII	CAGCTG	2 cut(s)	413, 638
RsaI	GTAC	3 cut(s)	335, 846, 854
RsaNI	GTAC	3 cut(s)	334, 845, 853
RseI	CAYNNNNRTG	2 cut(s)	373, 519
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	45, 102, 110
SatI	GCNGC	4 cut(s)	7, 130, 636, 639
Sau3AI	GATC	3 cut(s)	455, 620, 752
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	3 cut(s)	463, 662, 731
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	2 cut(s)	309, 639
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	373, 519
SmlI	CTYRAG	1 cut(s)	657
SmoI	CTYRAG	1 cut(s)	657
Sse9I	AATT	9 cut(s)	46, 113, 133, 179, 229, 393, 530, 581, 681
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	15, 859
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	3 cut(s)	297, 333, 403
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	80, 348
TasI	AATT	9 cut(s)	46, 113, 133, 179, 229, 393, 530, 581, 681
TatI	WGTACW	1 cut(s)	852
TfiI	GAWTC	2 cut(s)	365, 486
Tru1I	TTAA	3 cut(s)	45, 102, 110
Tru9I	TTAA	3 cut(s)	45, 102, 110
TscAI	CASTG	2 cut(s)	279, 349
TseI	GCWGC	4 cut(s)	6, 129, 635, 638
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	279, 349
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	3 cut(s)	431, 514, 518
XmiI	GTMKAC	2 cut(s)	348, 663
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	2 cut(s)	15, 859
Zsp2I	ATGCAT	2 cut(s)	429, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.