Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

2557598 .. 2559757

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0014700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTACCACCAGTCAACTTGTAGTGCTGCAAGTCCCACTGAGGCAAGAGAGACACGTGAGGGATCTCTTCCATCAGGTGATATTATAGGTTTCGATGGTGGTACGGCTATGGGTGTCGGAAGGGCGAACTCGGCGATTTTGGTGGTGGCGGACCGTGTGTTTGTGAGGCTGATCATTCGGCAAAGGGTCGTGGATCTGGCTTCTGCGTGGCTGGAAGGGATTACCAGTGTGAAGGATCCAGTCTGGAACTGGTTTGCTGGTGCAATTGTACGGCGACTAGGCGAAGGTGGATCTTCTCCTATTTGGCTGCTAAATGGGTATTTCAAATTCGCCTTTGCATCCTCTACAACGGCTTCTAATGGTGGGAACCCGGTCATTGCAAGAGGTCCGTTAGCTTGGACTGGTGGGTTGGAGAGTCCGGAGATGATATTGCTATTGCCGGCCGTACTGTTGCTGCAAACATGGTGCAGGCTAGGGTTTCCCATGTTGGGGGATACTGGGCCTCAAGATGGAGATTGGGCTTTCCTTGTGTGGGCTTGGGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

182

Amino Acids

19.51

Weight (kDa)

5.34

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	5 cut(s)	70, 201, 230, 243, 298
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	326
AcvI	CACGTG	1 cut(s)	56
AfaI	GTAC	4 cut(s)	5, 103, 270, 447
AfiI	CCNNNNNNNGG	4 cut(s)	488, 489, 509, 532
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	325
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	5 cut(s)	70, 201, 230, 243, 298
Aor13HI	TCCGGA	1 cut(s)	418
AoxI	GGCC	2 cut(s)	441, 500
ApeKI	GCWGC	3 cut(s)	26, 307, 454
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspS9I	GGNCC	3 cut(s)	151, 386, 500
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	151, 386
BamHI	GGATCC	1 cut(s)	235
BbrPI	CACGTG	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	13, 294, 441
BccI	CCATC	3 cut(s)	79, 89, 503
BceAI	ACGGC	4 cut(s)	120, 287, 366, 428
BciVI	GTATCC	1 cut(s)	487
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	2 cut(s)	278, 473
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	3 cut(s)	27, 308, 455
BlsI	GCNGC	3 cut(s)	28, 309, 456
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	2 cut(s)	151, 386
BmgT120I	GGNCC	3 cut(s)	151, 386, 500
BmiI	GGNNCC	2 cut(s)	237, 368
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	347
BmuI	ACTGGG	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	371
BsaAI	YACGTR	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	4 cut(s)	488, 489, 509, 532
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	6 cut(s)	10, 225, 239, 254, 406, 502
Bse3DI	GCAATG	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	418
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	4 cut(s)	488, 489, 509, 532
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	6 cut(s)	10, 225, 239, 254, 406, 502
BseX3I	CGGCCG	1 cut(s)	441
BseXI	GCAGC	3 cut(s)	13, 294, 441
BsgI	GTGCAG	1 cut(s)	487
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	443, 502
BsiEI	CGRYCG	1 cut(s)	444
BsiSI	CCGG	3 cut(s)	371, 419, 440
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	4 cut(s)	488, 489, 509, 532
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	443, 502
Bsp13I	TCCGGA	1 cut(s)	418
Bsp143I	GATC	5 cut(s)	62, 171, 193, 235, 290
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	2 cut(s)	443, 502
BspCNI	CTCAG	1 cut(s)	31
BspEI	TCCGGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	237, 368
BspPI	GGATC	5 cut(s)	70, 201, 230, 243, 298
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	6 cut(s)	10, 225, 239, 254, 406, 502
BssAI	RCCGGY	1 cut(s)	439
BssMI	GATC	5 cut(s)	62, 171, 193, 235, 290
Bst4CI	ACNGT	2 cut(s)	155, 450
Bst6I	CTCTTC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	441, 470
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	338
BstKTI	GATC	5 cut(s)	65, 174, 196, 238, 293
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	5 cut(s)	62, 171, 193, 235, 290
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	13, 294, 441
BstX2I	RGATCY	4 cut(s)	62, 193, 235, 290
BstYI	RGATCY	4 cut(s)	62, 193, 235, 290
BstZI	CGGCCG	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	443, 502
BtsCI	GGATG	1 cut(s)	338
BtsIMutI	CAGTG	2 cut(s)	36, 232
Cac8I	GCNNGC	2 cut(s)	441, 470
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	3 cut(s)	151, 386, 500
CpoI	CGGWCCG	1 cut(s)	151
Csp6I	GTAC	4 cut(s)	4, 102, 269, 446
CspI	CGGWCCG	1 cut(s)	151
CviAII	CATG	2 cut(s)	462, 484
CviQI	GTAC	4 cut(s)	4, 102, 269, 446
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	5 cut(s)	64, 173, 195, 237, 292
DpnII	GATC	5 cut(s)	62, 171, 193, 235, 290
EaeI	YGGCCR	1 cut(s)	441
EagI	CGGCCG	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	164
EclXI	CGGCCG	1 cut(s)	441
Eco47I	GGWCC	2 cut(s)	151, 386
Eco52I	CGGCCG	1 cut(s)	441
Eco72I	CACGTG	1 cut(s)	56
FaeI	CATG	2 cut(s)	465, 487
FaiI	YATR	5 cut(s)	86, 110, 463, 485, 547
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	461, 483
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	27, 308, 455
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	3 cut(s)	27, 308, 455
FspBI	CTAG	2 cut(s)	278, 473
GluI	GCNGC	3 cut(s)	27, 308, 455
HaeIII	GGCC	2 cut(s)	443, 502
HapII	CCGG	3 cut(s)	371, 419, 440
Hin1II	CATG	2 cut(s)	465, 487
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	3 cut(s)	371, 419, 440
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	3 cut(s)	244, 419, 506
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	4 cut(s)	114, 209, 226, 278
HpyCH4III	ACNGT	2 cut(s)	155, 450
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	6 cut(s)	29, 263, 338, 380, 457, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	465, 487
Kpn2I	TCCGGA	1 cut(s)	418
KroI	GCCGGC	1 cut(s)	439
KroNI	GCCGGC	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	5 cut(s)	62, 171, 193, 235, 290
Lsp1109I	GCAGC	3 cut(s)	13, 294, 441
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	2 cut(s)	278, 473
MaeII	ACGT	1 cut(s)	55
MalI	GATC	5 cut(s)	64, 173, 195, 237, 292
MboI	GATC	5 cut(s)	62, 171, 193, 235, 290
MboII	GAAGA	2 cut(s)	59, 285
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	4 cut(s)	62, 193, 235, 290
MluCI	AATT	2 cut(s)	264, 326
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	2 cut(s)	97, 390
MnlI	CCTC	6 cut(s)	34, 52, 159, 352, 377, 513
MroI	TCCGGA	1 cut(s)	418
MroNI	GCCGGC	1 cut(s)	439
MspI	CCGG	3 cut(s)	371, 419, 440
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	131
NaeI	GCCGGC	1 cut(s)	441
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	5 cut(s)	62, 171, 193, 235, 290
NgoMIV	GCCGGC	1 cut(s)	439
NlaIII	CATG	2 cut(s)	465, 487
NlaIV	GGNNCC	2 cut(s)	237, 368
NmeAIII	GCCGAG	1 cut(s)	110
PdiI	GCCGGC	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	28, 309, 456
PleI	GAGTC	1 cut(s)	423
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	423
Ppu21I	YACGTR	1 cut(s)	56
PspCI	CACGTG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	237, 368
PspPI	GGNCC	3 cut(s)	151, 386, 500
PsuI	RGATCY	4 cut(s)	62, 193, 235, 290
RsaI	GTAC	4 cut(s)	5, 103, 270, 447
RsaNI	GTAC	4 cut(s)	4, 102, 269, 446
Rsr2I	CGGWCCG	1 cut(s)	151
RsrII	CGGWCCG	1 cut(s)	151
SatI	GCNGC	3 cut(s)	27, 308, 455
Sau3AI	GATC	5 cut(s)	62, 171, 193, 235, 290
Sau96I	GGNCC	3 cut(s)	151, 386, 500
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	6 cut(s)	58, 79, 91, 289, 388, 397
SfaNI	GCATC	1 cut(s)	347
SinI	GGWCC	2 cut(s)	151, 386
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	2 cut(s)	264, 326
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	2 cut(s)	278, 473
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	155, 450
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	93
TasI	AATT	2 cut(s)	264, 326
TscAI	CASTG	2 cut(s)	43, 232
TseI	GCWGC	3 cut(s)	26, 307, 454
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	43, 232
VpaK11BI	GGWCC	2 cut(s)	151, 386
XapI	RAATTY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	246
XspI	CTAG	2 cut(s)	278, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.