Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

14194715 .. 14195415

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0152800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTGGCATCTTTCATGGCCCAAGACCACATGCTCCACCAAGATTGGTGGTCATGAACCTCAAACCACCACAGCCACAGCCACCGCTGCTACCAAATGCATCAAAGCCTCACCATCACCTTCTCATTGTACTTGTCTAGCCAAACTGGTGAGGAAGCTTAGGAAACAGAGAAGAAGGGTAGGCTGTGCAAAAAGTTCTTCGTTCCAGTGCCGGTATGATCCACTGAGCTATTCTCTCAACTTTGATGCCAGTGGATGTGGGAACTTGTCAGATGACCAAGATTACTACAAGTTCTATGCCTTCTCTTCAAGGTTTGTGGCCAACCCATCAGGAGCCTCTTGTCCAAGACTAATCACCACCACCACTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

123

Amino Acids

13.56

Weight (kDa)

9.56

Isoelectric Point (pI)

57.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	318
AfaI	GTAC	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	309
AluBI	AGCT	2 cut(s)	157, 228
AluI	AGCT	2 cut(s)	157, 228
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	2 cut(s)	17, 318
ApeKI	GCWGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	4 cut(s)	102, 108, 160, 346
BalI	TGGCCA	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	121, 334
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	334
BmsI	GCATC	3 cut(s)	16, 108, 235
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
Bpu10I	CCTNAGC	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	3 cut(s)	150, 205, 249
BseGI	GGATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	3 cut(s)	150, 205, 249
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	2 cut(s)	19, 320
BsiSI	CCGG	1 cut(s)	211
BsnI	GGCC	2 cut(s)	19, 320
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	2 cut(s)	19, 320
BspCNI	CTCAG	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	150, 205, 249
BssAI	RCCGGY	1 cut(s)	210
BssMI	GATC	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	158, 224
BstF5I	GGATG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	19, 320
BtsCI	GGATG	1 cut(s)	260
BtsIMutI	CAGTG	3 cut(s)	212, 221, 256
CciI	TCATGA	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	129
CspCI	CAANNNNNGTGG	6 cut(s)	25, 28, 60, 63, 297, 332
CviAII	CATG	3 cut(s)	15, 30, 53
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	2 cut(s)	158, 224
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	101
FaeI	CATG	3 cut(s)	18, 33, 56
FaiI	YATR	5 cut(s)	16, 31, 54, 216, 297
FatI	CATG	3 cut(s)	14, 29, 52
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	19, 320
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	3 cut(s)	18, 33, 56
HindIII	AAGCTT	1 cut(s)	155
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	4 cut(s)	102, 108, 160, 346
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	2 cut(s)	53, 330
HpyAV	CCTTC	3 cut(s)	129, 168, 310
HpyCH4V	TGCA	2 cut(s)	99, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	158, 224
Hsp92II	CATG	3 cut(s)	18, 33, 56
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	38, 332
LpnPI	CCDG	5 cut(s)	131, 218, 224, 262, 315
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	3 cut(s)	16, 108, 235
MaeI	CTAG	1 cut(s)	137
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	183, 189, 297
MlsI	TGGCCA	1 cut(s)	320
MluNI	TGGCCA	1 cut(s)	320
MnlI	CCTC	4 cut(s)	69, 118, 144, 346
Mox20I	TGGCCA	1 cut(s)	320
Mph1103I	ATGCAT	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	3 cut(s)	18, 33, 56
NlaIV	GGNNCC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	101
NspI	RCATGY	1 cut(s)	33
PagI	TCATGA	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	18
SetI	ASST	5 cut(s)	61, 121, 159, 230, 314
SfaNI	GCATC	3 cut(s)	16, 108, 235
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	137
TatI	WGTACW	1 cut(s)	128
TscAI	CASTG	3 cut(s)	212, 228, 256
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	3 cut(s)	212, 228, 256
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.