Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

24957358 .. 24960168

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0237200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAACAAAACTTCTTTGAGCCTCAGGGACACTTTGAGTCAGATGGAGATGTTTCGGTCAAGAAGTGGAAATCAATGTCAGCCCCTACTACAGTCTCGGACAATGATAGTGGCTGCTTTGAGTGCAACATATGCTTTGATTCAGCACATGAACCAGTGGTGACACTCTGTGGTCACCTGTACTGCTGGCCTTGCATTTACAAATGGCTTCAGGTCCCGAGTGCTTCTGATGAACCAAACCAGCTGCAGCAAACCTGTCCTGTCTGTAAGGCTAACATTTCCCCATCCTCAGTGGTTCCCCTCTATGGCCGTGGTGCAGGTTCAAAAGGAAAGAAACCCAATTTGGATCTGGTTGTACCACGTAGACCACCACCTAGGTTGGACACTTTGATTACATCTACTAGCCCTACATCACCTTCAAGACAGCAACTTCATTCAAATTATTTCCATGCACAAACACATCCAGAGTCAGTTTATGATCAATACAGCCCTTATGGAGGTTATGCCACAAATTCAGAATCAGCTTATCTTGGCAGTACGATGTTGACACATTTATCCAATCCAACGATAGGAATGGTTGGAGAGTTTGTGTTTGCAAGGATGTTTGGCAGCTCAGACACAAATTTGTTTACTTATCCTTATCTGAATTCATACCCGCCCAGCAGTCCTAGGATGAGAAGACAGGAAGTTCAGCTTGACAAATCTCTTAATAGAGTCACCATCTTTCTTTTCTGCTGCTTTATTTTGTGTCTTCTCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

254

Amino Acids

28.43

Weight (kDa)

6.36

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	41 - 71	4.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	41 - 90	2.4e-07	zinc-RING finger domain
zf-RING_2	PF13639	41 - 90	5.1e-06	Ring finger domain
zf-C3HC4_3	PF13920	41 - 94	2.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	42 - 89	4.2e-09	Zinc finger, C3HC4 type (RING finger)
RING_XB3-XBAT31	PF24921	42 - 94	6.4e-08	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-RING_UBOX	PF13445	42 - 71	5.7e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	364
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	1 cut(s)	354
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	3 cut(s)	511, 622, 646
AcuI	CTGAAG	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	3 cut(s)	182, 357, 538
AfiI	CCNNNNNNNGG	3 cut(s)	305, 497, 569
AgsI	TTSAA	3 cut(s)	324, 420, 438
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	4 cut(s)	244, 524, 612, 694
AluI	AGCT	4 cut(s)	244, 524, 612, 694
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	217
AoxI	GGCC	2 cut(s)	188, 307
ApeKI	GCWGC	5 cut(s)	114, 244, 247, 609, 735
ApoI	RAATTY	3 cut(s)	511, 622, 646
AspA2I	CCTAGG	2 cut(s)	374, 668
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	4 cut(s)	167, 172, 405, 709
AvaI	CYCGRG	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	214
AvrII	CCTAGG	2 cut(s)	374, 668
AxyI	CCTNAGG	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	685, 743
BbvI	GCAGC	5 cut(s)	101, 231, 259, 621, 722
BccI	CCATC	3 cut(s)	38, 292, 728
BceAI	ACGGC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	3 cut(s)	375, 402, 669
BfmI	CTRYAG	2 cut(s)	90, 245
BfuAI	ACCTGC	1 cut(s)	308
BisI	GCNGC	5 cut(s)	115, 245, 248, 610, 736
BlnI	CCTAGG	2 cut(s)	374, 668
BlsI	GCNGC	5 cut(s)	116, 246, 249, 611, 737
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	216, 297
BpiI	GAAGAC	2 cut(s)	685, 743
BsaAI	YACGTR	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	310, 374, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 497, 569
Bse1I	ACTGG	1 cut(s)	155
Bse21I	CCTNAGG	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	310, 374, 668
BseGI	GGATG	4 cut(s)	284, 460, 606, 678
BseLI	CCNNNNNNNGG	3 cut(s)	305, 497, 569
BseMII	CTCAG	3 cut(s)	38, 303, 627
BseNI	ACTGG	1 cut(s)	155
BseXI	GCAGC	5 cut(s)	101, 231, 259, 621, 722
BseYI	CCCAGC	1 cut(s)	659
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	190, 309
BsiHKCI	CYCGRG	1 cut(s)	217
BslFI	GGGAC	2 cut(s)	42, 200
BslI	CCNNNNNNNGG	3 cut(s)	305, 497, 569
BsmAI	GTCTC	1 cut(s)	100
BsmFI	GGGAC	2 cut(s)	42, 200
BsnI	GGCC	2 cut(s)	190, 309
BsoBI	CYCGRG	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	346, 478
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	2 cut(s)	190, 309
BspCNI	CTCAG	3 cut(s)	37, 302, 626
BspLI	GGNNCC	2 cut(s)	216, 297
BspMAI	CTGCAG	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	310, 374, 668
BssMI	GATC	2 cut(s)	346, 478
BssT1I	CCWWGG	2 cut(s)	374, 668
Bst4CI	ACNGT	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	24, 289, 613
BstDSI	CCRYGG	1 cut(s)	310
BstEII	GGTNACC	1 cut(s)	173
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	4 cut(s)	284, 460, 606, 678
BstKTI	GATC	2 cut(s)	349, 481
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	2 cut(s)	346, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 132, 192
BstPI	GGTNACC	1 cut(s)	173
BstSFI	CTRYAG	2 cut(s)	90, 245
BstV1I	GCAGC	5 cut(s)	101, 231, 259, 621, 722
BstV2I	GAAGAC	2 cut(s)	685, 743
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	190, 309
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	4 cut(s)	284, 460, 606, 678
BtsIMutI	CAGTG	2 cut(s)	162, 297
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	181, 356, 537
CspCI	CAANNNNNGTGG	4 cut(s)	91, 126, 360, 395
CviAII	CATG	2 cut(s)	149, 449
CviQI	GTAC	3 cut(s)	181, 356, 537
DdeI	CTNAG	3 cut(s)	24, 289, 613
DpnI	GATC	2 cut(s)	348, 480
DpnII	GATC	2 cut(s)	346, 478
DraIII	CACNNNGTG	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	374, 668
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	217
Eco91I	GGTNACC	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	374, 668
ErhI	CCWWGG	2 cut(s)	374, 668
FaeI	CATG	2 cut(s)	152, 452
FaiI	YATR	9 cut(s)	131, 133, 150, 306, 450, 477, 495, 504, 652
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	2 cut(s)	42, 200
FatI	CATG	2 cut(s)	148, 448
FauI	CCCGC	1 cut(s)	663
FauNDI	CATATG	1 cut(s)	131
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	115, 245, 248, 610, 736
FokI	GGATG	4 cut(s)	271, 447, 613, 685
Fsp4HI	GCNGC	5 cut(s)	115, 245, 248, 610, 736
FspBI	CTAG	3 cut(s)	375, 402, 669
GluI	GCNGC	5 cut(s)	115, 245, 248, 610, 736
GsaI	CCCAGC	1 cut(s)	663
HaeIII	GGCC	2 cut(s)	190, 309
Hin1II	CATG	2 cut(s)	152, 452
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	5 cut(s)	38, 140, 467, 518, 714
HphI	GGTGA	4 cut(s)	167, 172, 405, 709
Hpy166II	GTNNAC	3 cut(s)	365, 546, 630
Hpy188I	TCNGA	7 cut(s)	43, 100, 229, 517, 616, 645, 764
Hpy188III	TCNNGA	4 cut(s)	61, 217, 420, 464
Hpy8I	GTNNAC	3 cut(s)	365, 546, 630
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	6 cut(s)	126, 195, 247, 317, 452, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 132, 192
HpyF3I	CTNAG	3 cut(s)	24, 289, 613
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	152, 452
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	346, 478
Lsp1109I	GCAGC	5 cut(s)	101, 231, 259, 621, 722
MaeI	CTAG	3 cut(s)	375, 402, 669
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	3 cut(s)	160, 173, 715
MalI	GATC	2 cut(s)	348, 480
MboI	GATC	2 cut(s)	346, 478
MboII	GAAGA	2 cut(s)	690, 743
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	5 cut(s)	340, 439, 511, 622, 646
MlyI	GAGTC	3 cut(s)	47, 476, 723
MmeI	TCCRAC	3 cut(s)	360, 559, 587
MnlI	CCTC	4 cut(s)	33, 298, 311, 491
MseI	TTAA	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	123, 132, 192
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	2 cut(s)	346, 478
NlaIII	CATG	2 cut(s)	152, 452
NlaIV	GGNNCC	2 cut(s)	216, 297
NmuCI	GTSAC	3 cut(s)	160, 173, 715
PfeI	GAWTC	2 cut(s)	140, 518
PkrI	GCNGC	5 cut(s)	116, 246, 249, 611, 737
PleI	GAGTC	3 cut(s)	46, 475, 722
PpsI	GAGTC	3 cut(s)	46, 475, 722
Ppu21I	YACGTR	1 cut(s)	362
PpuMI	RGGWCCY	1 cut(s)	214
Psp5II	RGGWCCY	1 cut(s)	214
PspEI	GGTNACC	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	659
PspN4I	GGNNCC	2 cut(s)	216, 297
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	3 cut(s)	182, 357, 538
RsaNI	GTAC	3 cut(s)	181, 356, 537
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	5 cut(s)	115, 245, 248, 610, 736
Sau3AI	GATC	2 cut(s)	346, 478
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	3 cut(s)	47, 476, 723
SfcI	CTRYAG	2 cut(s)	90, 245
SinI	GGWCC	1 cut(s)	214
Sse9I	AATT	5 cut(s)	340, 439, 511, 622, 646
SsiI	CCGC	1 cut(s)	656
SspMI	CTAG	3 cut(s)	375, 402, 669
StyI	CCWWGG	2 cut(s)	374, 668
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	364
TaqII	GACCGA	1 cut(s)	46
TasI	AATT	5 cut(s)	340, 439, 511, 622, 646
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	140, 518
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	2 cut(s)	162, 297
TseFI	GTSAC	3 cut(s)	160, 173, 715
TseI	GCWGC	5 cut(s)	114, 244, 247, 609, 735
Tsp45I	GTSAC	3 cut(s)	160, 173, 715
TspDTI	ATGAA	4 cut(s)	165, 246, 422, 639
TspRI	CASTG	2 cut(s)	162, 297
VpaK11BI	GGWCC	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	3 cut(s)	511, 622, 646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmaJI	CCTAGG	2 cut(s)	374, 668
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	3 cut(s)	375, 402, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.