Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNA_pol_Rpb2_1 | PF04563 | 58 - 435 | 1.7e-53 | RNA polymerase beta subunit |
| RNA_pol_Rpb2_2 | PF04561 | 209 - 385 | 4.6e-22 | RNA polymerase Rpb2, domain 2 |
| RNA_pol_Rpb2_3 | PF04565 | 461 - 525 | 6e-19 | RNA polymerase Rpb2, domain 3 |
| RNA_pol_Rpb2_4 | PF04566 | 562 - 622 | 4e-23 | RNA polymerase Rpb2, domain 4 |
| RNA_pol_Rpb2_6 | PF00562 | 691 - 1065 | 4.5e-134 | RNA polymerase Rpb2, domain 6 |
| RNA_pol_Rpb2_7 | PF04560 | 1067 - 1157 | 7.4e-31 | RNA polymerase Rpb2, domain 7 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 886 |
| Acc36I | ACCTGC | 3 cut(s) | 1245, 2467, 2539 |
| AccB1I | GGYRCC | 2 cut(s) | 854, 3248 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2735 |
| AccI | GTMKAC | 2 cut(s) | 1230, 2725 |
| AclWI | GGATC | 8 cut(s) | 263, 554, 753, 836, 1197, 2361, 3284, 3424 |
| AcoI | YGGCCR | 1 cut(s) | 1850 |
| AcsI | RAATTY | 3 cut(s) | 137, 1778, 3360 |
| AcuI | CTGAAG | 1 cut(s) | 1233 |
| AcvI | CACGTG | 1 cut(s) | 3140 |
| AcyI | GRCGYC | 1 cut(s) | 264 |
| AfaI | GTAC | 7 cut(s) | 9, 413, 505, 825, 1283, 1927, 2782 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 851, 2735, 3182 |
| AflIII | ACRYGT | 1 cut(s) | 359 |
| AgsI | TTSAA | 7 cut(s) | 419, 624, 1198, 1316, 1693, 1881, 2618 |
| AhlI | ACTAGT | 1 cut(s) | 806 |
| AjnI | CCWGG | 4 cut(s) | 449, 562, 2506, 3432 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 122, 154, 725, 757 |
| Alw26I | GTCTC | 3 cut(s) | 686, 1416, 1692 |
| AlwI | GGATC | 8 cut(s) | 263, 554, 753, 836, 1197, 2361, 3284, 3424 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1909 |
| Ama87I | CYCGRG | 1 cut(s) | 152 |
| AoxI | GGCC | 6 cut(s) | 1309, 1417, 1566, 1594, 1850, 2441 |
| ApaI | GGGCCC | 1 cut(s) | 1598 |
| ApeKI | GCWGC | 6 cut(s) | 42, 184, 498, 1739, 1807, 2501 |
| ApoI | RAATTY | 3 cut(s) | 137, 1778, 3360 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1324, 3364 |
| AspLEI | GCGC | 3 cut(s) | 887, 1086, 3273 |
| AsuHPI | GGTGA | 9 cut(s) | 178, 557, 952, 1541, 1659, 2047, 2087, 2750, 2963 |
| AsuII | TTCGAA | 1 cut(s) | 3297 |
| AsuNHI | GCTAGC | 1 cut(s) | 1387 |
| AvaI | CYCGRG | 1 cut(s) | 152 |
| BaeGI | GKGCMC | 3 cut(s) | 554, 859, 1598 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 908, 941, 2772, 2805 |
| BanI | GGYRCC | 2 cut(s) | 854, 3248 |
| BanII | GRGCYC | 1 cut(s) | 1598 |
| BbrPI | CACGTG | 1 cut(s) | 3140 |
| BbsI | GAAGAC | 1 cut(s) | 1229 |
| BbvI | GCAGC | 6 cut(s) | 54, 196, 485, 1726, 1819, 2488 |
| BciT130I | CCWGG | 4 cut(s) | 451, 564, 2508, 3434 |
| BciVI | GTATCC | 2 cut(s) | 2100, 2217 |
| BclI | TGATCA | 1 cut(s) | 811 |
| BcoDI | GTCTC | 3 cut(s) | 686, 1416, 1692 |
| BcuI | ACTAGT | 1 cut(s) | 806 |
| BfmI | CTRYAG | 1 cut(s) | 1227 |
| BfoI | RGCGCY | 1 cut(s) | 3274 |
| BfuAI | ACCTGC | 3 cut(s) | 1245, 2467, 2539 |
| BfuI | GTATCC | 2 cut(s) | 2100, 2217 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1497, 1565 |
| BglII | AGATCT | 1 cut(s) | 735 |
| Bme1390I | CCNGG | 4 cut(s) | 451, 564, 2508, 3434 |
| BmeT110I | CYCGRG | 1 cut(s) | 152 |
| BmiI | GGNNCC | 8 cut(s) | 30, 856, 1596, 1922, 2553, 3087, 3151, 3250 |
| BmrFI | CCNGG | 4 cut(s) | 451, 564, 2508, 3434 |
| BmsI | GCATC | 6 cut(s) | 1084, 1102, 1350, 2314, 2354, 2463 |
| BmtI | GCTAGC | 1 cut(s) | 1391 |
| BpiI | GAAGAC | 1 cut(s) | 1229 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1649, 1681 |
| BpmI | CTGGAG | 3 cut(s) | 585, 1506, 3425 |
| Bpu10I | CCTNAGC | 2 cut(s) | 284, 3043 |
| Bpu14I | TTCGAA | 1 cut(s) | 3297 |
| BpuEI | CTTGAG | 1 cut(s) | 1172 |
| BsaAI | YACGTR | 1 cut(s) | 3140 |
| BsaBI | GATNNNNATC | 1 cut(s) | 750 |
| BsaHI | GRCGYC | 1 cut(s) | 264 |
| BsaI | GGTCTC | 1 cut(s) | 1416 |
| BsaJI | CCNNGG | 4 cut(s) | 21, 129, 1705, 2507 |
| BsaWI | WCCGGW | 1 cut(s) | 1027 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1767, 1797 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 851, 2735, 3182 |
| Bse118I | RCCGGY | 1 cut(s) | 1035 |
| Bse1I | ACTGG | 8 cut(s) | 223, 1336, 1492, 1548, 2125, 3058, 3252, 3442 |
| Bse3DI | GCAATG | 5 cut(s) | 1749, 1821, 2139, 2154, 3062 |
| Bse8I | GATNNNNATC | 1 cut(s) | 750 |
| BseBI | CCWGG | 4 cut(s) | 451, 564, 2508, 3434 |
| BseDI | CCNNGG | 4 cut(s) | 21, 129, 1705, 2507 |
| BseGI | GGATG | 8 cut(s) | 968, 1099, 1117, 1126, 1365, 1701, 2329, 3012 |
| BseJI | GATNNNNATC | 1 cut(s) | 750 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 851, 2735, 3182 |
| BseMI | GCAATG | 5 cut(s) | 1749, 1821, 2139, 2154, 3062 |
| BseMII | CTCAG | 4 cut(s) | 298, 1292, 3057, 3171 |
| BseNI | ACTGG | 8 cut(s) | 223, 1336, 1492, 1548, 2125, 3058, 3252, 3442 |
| BseRI | GAGGAG | 3 cut(s) | 95, 1604, 1670 |
| BseSI | GKGCMC | 3 cut(s) | 554, 859, 1598 |
| BseX3I | CGGCCG | 1 cut(s) | 1850 |
| BseXI | GCAGC | 6 cut(s) | 54, 196, 485, 1726, 1819, 2488 |
| BseYI | CCCAGC | 4 cut(s) | 1763, 1916, 2075, 2270 |
| BsgI | GTGCAG | 1 cut(s) | 2487 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1853 |
| BshFI | GGCC | 6 cut(s) | 1311, 1419, 1568, 1596, 1852, 2443 |
| BshNI | GGYRCC | 2 cut(s) | 854, 3248 |
| BsiEI | CGRYCG | 1 cut(s) | 1853 |
| BsiHKCI | CYCGRG | 1 cut(s) | 152 |
| BsiSI | CCGG | 3 cut(s) | 261, 1028, 1036 |
| BslFI | GGGAC | 3 cut(s) | 2537, 3099, 3135 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 851, 2735, 3182 |
| BsmAI | GTCTC | 3 cut(s) | 686, 1416, 1692 |
| BsmFI | GGGAC | 3 cut(s) | 2537, 3099, 3135 |
| BsmI | GAATGC | 4 cut(s) | 480, 887, 1918, 2284 |
| BsnI | GGCC | 6 cut(s) | 1311, 1419, 1568, 1596, 1852, 2443 |
| Bso31I | GGTCTC | 1 cut(s) | 1416 |
| BsoBI | CYCGRG | 1 cut(s) | 152 |
| Bsp119I | TTCGAA | 1 cut(s) | 3297 |
| Bsp120I | GGGCCC | 1 cut(s) | 1594 |
| Bsp1286I | GDGCHC | 3 cut(s) | 554, 859, 1598 |
| Bsp1407I | TGTACA | 1 cut(s) | 823 |
| BspANI | GGCC | 6 cut(s) | 1311, 1419, 1568, 1596, 1852, 2443 |
| BspCNI | CTCAG | 4 cut(s) | 297, 1291, 3056, 3172 |
| BspHI | TCATGA | 3 cut(s) | 786, 2334, 2841 |
| BspLI | GGNNCC | 8 cut(s) | 30, 856, 1596, 1922, 2553, 3087, 3151, 3250 |
| BspMI | ACCTGC | 3 cut(s) | 1245, 2467, 2539 |
| BspOI | GCTAGC | 1 cut(s) | 1391 |
| BspPI | GGATC | 8 cut(s) | 263, 554, 753, 836, 1197, 2361, 3284, 3424 |
| BspT104I | TTCGAA | 1 cut(s) | 3297 |
| BspT107I | GGYRCC | 2 cut(s) | 854, 3248 |
| BspTNI | GGTCTC | 1 cut(s) | 1416 |
| BsrDI | GCAATG | 5 cut(s) | 1749, 1821, 2139, 2154, 3062 |
| BsrFI | RCCGGY | 1 cut(s) | 1035 |
| BsrGI | TGTACA | 1 cut(s) | 823 |
| BsrI | ACTGG | 8 cut(s) | 223, 1336, 1492, 1548, 2125, 3058, 3252, 3442 |
| BssAI | RCCGGY | 1 cut(s) | 1035 |
| BssECI | CCNNGG | 4 cut(s) | 21, 129, 1705, 2507 |
| BssNI | GRCGYC | 1 cut(s) | 264 |
| BssT1I | CCWWGG | 3 cut(s) | 21, 129, 1705 |
| Bst2UI | CCWGG | 4 cut(s) | 451, 564, 2508, 3434 |
| Bst4CI | ACNGT | 8 cut(s) | 57, 712, 983, 1228, 1353, 2287, 2875, 3248 |
| Bst6I | CTCTTC | 4 cut(s) | 832, 938, 1182, 1581 |
| BstACI | GRCGYC | 1 cut(s) | 264 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 919, 1506, 2288 |
| BstAUI | TGTACA | 1 cut(s) | 823 |
| BstBAI | YACGTR | 1 cut(s) | 3140 |
| BstBI | TTCGAA | 1 cut(s) | 3297 |
| BstDEI | CTNAG | 7 cut(s) | 36, 284, 1278, 1555, 2062, 3043, 3180 |
| BstF5I | GGATG | 8 cut(s) | 968, 1099, 1117, 1126, 1365, 1701, 2329, 3012 |
| BstH2I | RGCGCY | 1 cut(s) | 3274 |
| BstHHI | GCGC | 3 cut(s) | 887, 1086, 3273 |
| BstMAI | GTCTC | 3 cut(s) | 686, 1416, 1692 |
| BstMCI | CGRYCG | 1 cut(s) | 1853 |
| BstNI | CCWGG | 4 cut(s) | 451, 564, 2508, 3434 |
| BstNSI | RCATGY | 5 cut(s) | 363, 1504, 1539, 1903, 3137 |
| BstSCI | CCNGG | 4 cut(s) | 449, 562, 2506, 3432 |
| BstSFI | CTRYAG | 1 cut(s) | 1227 |
| BstSLI | GKGCMC | 3 cut(s) | 554, 859, 1598 |
| BstV1I | GCAGC | 6 cut(s) | 54, 196, 485, 1726, 1819, 2488 |
| BstV2I | GAAGAC | 1 cut(s) | 1229 |
| BstX2I | RGATCY | 4 cut(s) | 735, 745, 841, 1189 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 279, 2245 |
| BstYI | RGATCY | 4 cut(s) | 735, 745, 841, 1189 |
| BstZI | CGGCCG | 1 cut(s) | 1850 |
| BsuI | GTATCC | 2 cut(s) | 2100, 2217 |
| BsuRI | GGCC | 6 cut(s) | 1311, 1419, 1568, 1596, 1852, 2443 |
| BtgZI | GCGATG | 1 cut(s) | 1130 |
| BtsCI | GGATG | 8 cut(s) | 968, 1099, 1117, 1126, 1365, 1701, 2329, 3012 |
| BtsI | GCAGTG | 1 cut(s) | 917 |
| BtsIMutI | CAGTG | 6 cut(s) | 216, 317, 917, 1499, 2132, 3051 |
| BveI | ACCTGC | 3 cut(s) | 1245, 2467, 2539 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1909 |
| CciI | TCATGA | 3 cut(s) | 786, 2334, 2841 |
| CfoI | GCGC | 3 cut(s) | 887, 1086, 3273 |
| Cfr10I | RCCGGY | 1 cut(s) | 1035 |
| CseI | GACGC | 1 cut(s) | 253 |
| Csp6I | GTAC | 7 cut(s) | 8, 412, 504, 824, 1282, 1926, 2781 |
| CviQI | GTAC | 7 cut(s) | 8, 412, 504, 824, 1282, 1926, 2781 |
| DdeI | CTNAG | 7 cut(s) | 36, 284, 1278, 1555, 2062, 3043, 3180 |
| DraI | TTTAAA | 1 cut(s) | 1104 |
| EaeI | YGGCCR | 1 cut(s) | 1850 |
| EagI | CGGCCG | 1 cut(s) | 1850 |
| Eam1104I | CTCTTC | 4 cut(s) | 832, 938, 1182, 1581 |
| EarI | CTCTTC | 4 cut(s) | 832, 938, 1182, 1581 |
| EciI | GGCGGA | 2 cut(s) | 41, 115 |
| EclXI | CGGCCG | 1 cut(s) | 1850 |
| Eco130I | CCWWGG | 3 cut(s) | 21, 129, 1705 |
| Eco24I | GRGCYC | 1 cut(s) | 1598 |
| Eco31I | GGTCTC | 1 cut(s) | 1416 |
| Eco52I | CGGCCG | 1 cut(s) | 1850 |
| Eco57I | CTGAAG | 1 cut(s) | 1233 |
| Eco72I | CACGTG | 1 cut(s) | 3140 |
| Eco88I | CYCGRG | 1 cut(s) | 152 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1594, 1595, 2551, 2630 |
| EcoRII | CCWGG | 4 cut(s) | 449, 562, 2506, 3432 |
| EcoT14I | CCWWGG | 3 cut(s) | 21, 129, 1705 |
| EcoT22I | ATGCAT | 2 cut(s) | 1061, 3135 |
| EcoT38I | GRGCYC | 1 cut(s) | 1598 |
| ErhI | CCWWGG | 3 cut(s) | 21, 129, 1705 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 603, 635 |
| FaqI | GGGAC | 3 cut(s) | 2537, 3099, 3135 |
| FauI | CCCGC | 2 cut(s) | 3349, 3470 |
| FbaI | TGATCA | 1 cut(s) | 811 |
| FblI | GTMKAC | 2 cut(s) | 1230, 2725 |
| FokI | GGATG | 8 cut(s) | 955, 1106, 1124, 1133, 1372, 1688, 2336, 3019 |
| FriOI | GRGCYC | 1 cut(s) | 1598 |
| FspI | TGCGCA | 1 cut(s) | 886 |
| GlaI | GCGC | 3 cut(s) | 886, 1085, 3272 |
| GsaI | CCCAGC | 4 cut(s) | 1767, 1920, 2079, 2274 |
| GsuI | CTGGAG | 3 cut(s) | 585, 1506, 3425 |
| HaeII | RGCGCY | 1 cut(s) | 3274 |
| HaeIII | GGCC | 6 cut(s) | 1311, 1419, 1568, 1596, 1852, 2443 |
| HapII | CCGG | 3 cut(s) | 261, 1028, 1036 |
| HgaI | GACGC | 1 cut(s) | 253 |
| HhaI | GCGC | 3 cut(s) | 887, 1086, 3273 |
| Hin1I | GRCGYC | 1 cut(s) | 264 |
| Hin6I | GCGC | 3 cut(s) | 885, 1084, 3271 |
| HinP1I | GCGC | 3 cut(s) | 885, 1084, 3271 |
| HincII | GTYRAC | 2 cut(s) | 214, 1975 |
| HindII | GTYRAC | 2 cut(s) | 214, 1975 |
| HindIII | AAGCTT | 2 cut(s) | 3404, 3480 |
| HpaI | GTTAAC | 1 cut(s) | 1975 |
| HpaII | CCGG | 3 cut(s) | 261, 1028, 1036 |
| HphI | GGTGA | 9 cut(s) | 178, 557, 952, 1541, 1659, 2047, 2087, 2750, 2963 |
| Hpy166II | GTNNAC | 8 cut(s) | 214, 1231, 1469, 1541, 1819, 1975, 2726, 2954 |
| Hpy8I | GTNNAC | 8 cut(s) | 214, 1231, 1469, 1541, 1819, 1975, 2726, 2954 |
| Hpy99I | CGWCG | 2 cut(s) | 269, 2181 |
| HpyAV | CCTTC | 9 cut(s) | 413, 589, 649, 784, 887, 975, 1520, 2207, 2956 |
| HpyCH4III | ACNGT | 8 cut(s) | 57, 712, 983, 1228, 1353, 2287, 2875, 3248 |
| HpyCH4IV | ACGT | 5 cut(s) | 380, 414, 663, 2818, 3139 |
| HpyF3I | CTNAG | 7 cut(s) | 36, 284, 1278, 1555, 2062, 3043, 3180 |
| HpySE526I | ACGT | 5 cut(s) | 380, 414, 663, 2818, 3139 |
| Hsp92I | GRCGYC | 1 cut(s) | 264 |
| HspAI | GCGC | 3 cut(s) | 885, 1084, 3271 |
| Ksp22I | TGATCA | 1 cut(s) | 811 |
| KspAI | GTTAAC | 1 cut(s) | 1975 |
| LmnI | GCTCC | 6 cut(s) | 355, 394, 1657, 1906, 2267, 3223 |
| Lsp1109I | GCAGC | 6 cut(s) | 54, 196, 485, 1726, 1819, 2488 |
| LweI | GCATC | 6 cut(s) | 1084, 1102, 1350, 2314, 2354, 2463 |
| MaeII | ACGT | 5 cut(s) | 380, 414, 663, 2818, 3139 |
| MfeI | CAATTG | 1 cut(s) | 2784 |
| MflI | RGATCY | 4 cut(s) | 735, 745, 841, 1189 |
| MhlI | GDGCHC | 3 cut(s) | 554, 859, 1598 |
| MlyI | GAGTC | 6 cut(s) | 11, 188, 408, 1893, 2651, 3165 |
| MmeI | TCCRAC | 2 cut(s) | 814, 2159 |
| Mph1103I | ATGCAT | 2 cut(s) | 1061, 3135 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1324, 3364 |
| MslI | CAYNNNNRTG | 2 cut(s) | 644, 3138 |
| MspA1I | CMGCKG | 1 cut(s) | 1739 |
| MspI | CCGG | 3 cut(s) | 261, 1028, 1036 |
| MspR9I | CCNGG | 4 cut(s) | 451, 564, 2508, 3434 |
| MunI | CAATTG | 1 cut(s) | 2784 |
| Mva1269I | GAATGC | 4 cut(s) | 480, 887, 1918, 2284 |
| MvaI | CCWGG | 4 cut(s) | 451, 564, 2508, 3434 |
| NheI | GCTAGC | 1 cut(s) | 1387 |
| NlaIV | GGNNCC | 8 cut(s) | 30, 856, 1596, 1922, 2553, 3087, 3151, 3250 |
| NmuCI | GTSAC | 8 cut(s) | 334, 425, 445, 1452, 1514, 1946, 2560, 2738 |
| NsbI | TGCGCA | 1 cut(s) | 886 |
| NsiI | ATGCAT | 2 cut(s) | 1061, 3135 |
| NspI | RCATGY | 5 cut(s) | 363, 1504, 1539, 1903, 3137 |
| NspV | TTCGAA | 1 cut(s) | 3297 |
| PaeI | GCATGC | 2 cut(s) | 1504, 3137 |
| PagI | TCATGA | 3 cut(s) | 786, 2334, 2841 |
| PciI | ACATGT | 1 cut(s) | 359 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1956, 2719 |
| PctI | GAATGC | 4 cut(s) | 480, 887, 1918, 2284 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1324, 3364 |
| PfeI | GAWTC | 7 cut(s) | 222, 524, 769, 932, 2462, 2710, 3048 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2735 |
| PfoI | TCCNGGA | 2 cut(s) | 562, 3432 |
| PleI | GAGTC | 6 cut(s) | 11, 188, 407, 1892, 2650, 3164 |
| PmaCI | CACGTG | 1 cut(s) | 3140 |
| PmlI | CACGTG | 1 cut(s) | 3140 |
| PpsI | GAGTC | 6 cut(s) | 11, 188, 407, 1892, 2650, 3164 |
| Ppu21I | YACGTR | 1 cut(s) | 3140 |
| PpuMI | RGGWCCY | 2 cut(s) | 2551, 2630 |
| PscI | ACATGT | 1 cut(s) | 359 |
| Psp5II | RGGWCCY | 2 cut(s) | 2551, 2630 |
| Psp6I | CCWGG | 4 cut(s) | 449, 562, 2506, 3432 |
| PspCI | CACGTG | 1 cut(s) | 3140 |
| PspFI | CCCAGC | 4 cut(s) | 1763, 1916, 2075, 2270 |
| PspGI | CCWGG | 4 cut(s) | 449, 562, 2506, 3432 |
| PspN4I | GGNNCC | 8 cut(s) | 30, 856, 1596, 1922, 2553, 3087, 3151, 3250 |
| PspOMI | GGGCCC | 1 cut(s) | 1594 |
| PspPPI | RGGWCCY | 2 cut(s) | 2551, 2630 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 981, 1013, 1312, 1344 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1909 |
| PsuI | RGATCY | 4 cut(s) | 735, 745, 841, 1189 |
| RsaI | GTAC | 7 cut(s) | 9, 413, 505, 825, 1283, 1927, 2782 |
| RsaNI | GTAC | 7 cut(s) | 8, 412, 504, 824, 1282, 1926, 2781 |
| RseI | CAYNNNNRTG | 2 cut(s) | 644, 3138 |
| SchI | GAGTC | 6 cut(s) | 11, 188, 408, 1893, 2651, 3165 |
| ScrFI | CCNGG | 4 cut(s) | 451, 564, 2508, 3434 |
| SduI | GDGCHC | 3 cut(s) | 554, 859, 1598 |
| SfaNI | GCATC | 6 cut(s) | 1084, 1102, 1350, 2314, 2354, 2463 |
| SfcI | CTRYAG | 1 cut(s) | 1227 |
| SfuI | TTCGAA | 1 cut(s) | 3297 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 644, 3138 |
| SmlI | CTYRAG | 1 cut(s) | 1151 |
| SmoI | CTYRAG | 1 cut(s) | 1151 |
| SpeI | ACTAGT | 1 cut(s) | 806 |
| SphI | GCATGC | 2 cut(s) | 1504, 3137 |
| SspI | AATATT | 1 cut(s) | 3391 |
| StyD4I | CCNGG | 4 cut(s) | 449, 562, 2506, 3432 |
| StyI | CCWWGG | 3 cut(s) | 21, 129, 1705 |
| TaaI | ACNGT | 8 cut(s) | 57, 712, 983, 1228, 1353, 2287, 2875, 3248 |
| TaiI | ACGT | 5 cut(s) | 383, 417, 666, 2821, 3142 |
| TaqII | GACCGA | 1 cut(s) | 2595 |
| TatI | WGTACW | 2 cut(s) | 823, 1281 |
| TauI | GCSGC | 4 cut(s) | 113, 1150, 1739, 1855 |
| TfiI | GAWTC | 7 cut(s) | 222, 524, 769, 932, 2462, 2710, 3048 |
| TscAI | CASTG | 6 cut(s) | 223, 324, 924, 1499, 2132, 3058 |
| TseFI | GTSAC | 8 cut(s) | 334, 425, 445, 1452, 1514, 1946, 2560, 2738 |
| TseI | GCWGC | 6 cut(s) | 42, 184, 498, 1739, 1807, 2501 |
| Tsp45I | GTSAC | 8 cut(s) | 334, 425, 445, 1452, 1514, 1946, 2560, 2738 |
| TspGWI | ACGGA | 4 cut(s) | 505, 536, 1913, 2076 |
| TspRI | CASTG | 6 cut(s) | 223, 324, 924, 1499, 2132, 3058 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2735 |
| XapI | RAATTY | 3 cut(s) | 137, 1778, 3360 |
| XceI | RCATGY | 5 cut(s) | 363, 1504, 1539, 1903, 3137 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1678, 2245 |
| XmiI | GTMKAC | 2 cut(s) | 1230, 2725 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1324, 3364 |
| Zsp2I | ATGCAT | 2 cut(s) | 1061, 3135 |