Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

33015192 .. 33016508

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGACTTCCCCGCCGGCAAACACATCGTCCCCAATATACCCCTCCCCGTCAGCGACGAGCTCGCACGCCGTTCTCCGAACCCTGTATCGATCTCATCGCCGAGTTGCCGACACCGTGGGAAGTACGAAGCTTTGGCTTGGCTGTGCGGATGTCTGAGCTGCTTCGTTGGGCTGGGCTTGTTGGCAAAACTAAAAAGTTTTAGGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0031966 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0060548 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4 zf-RING_UBOX

Protein Analysis

69

Amino Acids

7.47

Weight (kDa)

9.43

Isoelectric Point (pI)

76.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 147
AfaI	GTAC	1 cut(s)	125
AluBI	AGCT	3 cut(s)	61, 131, 159
AluI	AGCT	3 cut(s)	61, 131, 159
Alw21I	GWGCWC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	159
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	14
BseCI	ATCGAT	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	146
BseYI	CCCAGC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	12, 147
BspCNI	CTCAG	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	16, 63, 67
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	89
BsuTUI	ATCGAT	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	1 cut(s)	155
Cac8I	GCNNGC	3 cut(s)	16, 63, 67
Cfr10I	RCCGGY	1 cut(s)	14
ClaI	ATCGAT	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	124
CviJI	RGCY	7 cut(s)	61, 131, 137, 142, 159, 172, 177
CviKI_1	RGCY	7 cut(s)	61, 131, 137, 142, 159, 172, 177
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	63
FaiI	YATR	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	14
FauI	CCCGC	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	160
GsaI	CCCAGC	1 cut(s)	176
HapII	CCGG	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	129
HpaII	CCGG	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	78, 156
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	155
KroI	GCCGGC	1 cut(s)	14
KroNI	GCCGGC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	90
LpnPI	CCDG	3 cut(s)	28, 96, 158
Lsp1109I	GCAGC	1 cut(s)	146
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	63
MnlI	CCTC	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	14
MspI	CCGG	1 cut(s)	15
NaeI	GCCGGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	90
NgoMIV	GCCGGC	1 cut(s)	14
NmeAIII	GCCGAG	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	3 cut(s)	63, 133, 161
SsiI	CCGC	2 cut(s)	12, 147
SstI	GAGCTC	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	89
TseI	GCWGC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.