Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012418

Physical Location & Seq

Genomic Coordinates Forward (+)

47644155 .. 47645050

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0324800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCAAGTACTAGGCAAGGAGACCCGGGAACCAAAAGCTTCCCAGTGCCCTTGTCTCGAGAATCCTCTGTCGTAACTACTCTAGAAGATTTGCTAGAGGCACGAAAATGGGATCTTTCTGCTCAAACACTCAATGTTGCCAAGGTGGTATCTATCAAGGGAGATACATTTATTCCTACAAGCCTGGCAACTAGTGTATCCTCGGGACTATTGTGGATGGTAACAGGTGCCTCTAACTTGGGTTATCTTGAAAGCCCCTCTTTGGCTCGTGTCAGGGTTATCTCTGACTTTAAGGAAACCAGTCCTCATGTTGTTCGGCAAGGGCCAACTATTTTAGAAGATGATGAGATCCCTGGGGGCAAGAAATTGCTCGAAAAATTGCAGGGAATTAGAGTATCCATTGACGAAAAGGTTTTCTCGACAGCAGCTGAGGCTTTGAAAACATCCATGAGAAAAGAGAATTTAGAAAGAGAGGTAGAAATGATAAGAAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

165

Amino Acids

18.1

Weight (kDa)

6.76

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76110
malus_domestica	MD08G1006400.v1.1 MD15G1005800.v1.1
prunus_persica	Prupe.1G358300_v2.0.a1
pyrus_communis	pycom08g00490 pycom15g00420
rosa_chinensis	RchiOBHm_Chr6g0303791
rosa_laevigata	RLG00000011043
rosa_multiflora	Rmu_sc0012878.1_g000004
rosa_roxburghii	Rroxscaffold_7G00164400
rosa_rugosa	Rorug06G0324800 Rorug06G0324900 Rorug06G0324900 Rorug06G0324900
rosa_samantha	Rh6AG439200 Rh6BG463800 Rh6CG451500 Rh6DG438400
rosa_wichuraiana	Rw6G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	120, 343
AcsI	RAATTY	1 cut(s)	460
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	251, 439
AhlI	ACTAGT	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	183, 352
AluBI	AGCT	2 cut(s)	39, 428
AluI	AGCT	2 cut(s)	39, 428
Alw26I	GTCTC	2 cut(s)	15, 60
AlwI	GGATC	2 cut(s)	120, 343
AlwNI	CAGNNNCTG	1 cut(s)	428
Ama87I	CYCGRG	3 cut(s)	25, 57, 202
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	2 cut(s)	26, 27
AvaI	CYCGRG	3 cut(s)	25, 57, 202
BaeGI	GKGCMC	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	185, 354
BciVI	GTATCC	2 cut(s)	208, 406
BcnI	CCSGG	2 cut(s)	26, 27
BcoDI	GTCTC	2 cut(s)	15, 60
BcuI	ACTAGT	1 cut(s)	191
BfaI	CTAG	4 cut(s)	12, 83, 95, 192
BfuI	GTATCC	2 cut(s)	208, 406
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	4 cut(s)	26, 27, 185, 354
BmeT110I	CYCGRG	3 cut(s)	25, 57, 202
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	31, 229
BmrFI	CCNGG	4 cut(s)	26, 27, 185, 354
BmrI	ACTGGG	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	2 cut(s)	26, 27
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	5 cut(s)	25, 141, 201, 352, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	44, 300
BseBI	CCWGG	2 cut(s)	185, 354
BseDI	CCNNGG	5 cut(s)	25, 141, 201, 352, 353
BseGI	GGATG	2 cut(s)	222, 443
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	44, 300
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	437
BshFI	GGCC	1 cut(s)	325
BshNI	GGYRCC	1 cut(s)	227
BsiHKCI	CYCGRG	3 cut(s)	25, 57, 202
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	15, 60
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	3 cut(s)	25, 57, 202
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	112, 348
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	31, 229
BspPI	GGATC	2 cut(s)	120, 343
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	44, 300
BssECI	CCNNGG	5 cut(s)	25, 141, 201, 352, 353
BssMI	GATC	2 cut(s)	112, 348
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	185, 354
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	222, 443
BstKTI	GATC	2 cut(s)	115, 351
BstMAI	GTCTC	2 cut(s)	15, 60
BstMBI	GATC	2 cut(s)	112, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	2 cut(s)	185, 354
BstSCI	CCNGG	4 cut(s)	24, 25, 183, 352
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	437
BstX2I	RGATCY	2 cut(s)	112, 348
BstYI	RGATCY	2 cut(s)	112, 348
BsuI	GTATCC	2 cut(s)	208, 406
BsuRI	GGCC	1 cut(s)	325
BtsCI	GGATG	2 cut(s)	222, 443
BtsIMutI	CAGTG	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	323
Cfr9I	CCCGGG	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	2 cut(s)	308, 448
CviJI	RGCY	7 cut(s)	39, 183, 255, 266, 325, 428, 434
CviKI_1	RGCY	7 cut(s)	39, 183, 255, 266, 325, 428, 434
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	2 cut(s)	114, 350
DpnII	GATC	2 cut(s)	112, 348
Eco130I	CCWWGG	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	15
Eco88I	CYCGRG	3 cut(s)	25, 57, 202
EcoRII	CCWGG	2 cut(s)	183, 352
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	311, 451
FaiI	YATR	2 cut(s)	309, 449
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	2 cut(s)	307, 447
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	2 cut(s)	229, 430
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	4 cut(s)	12, 83, 95, 192
GluI	GCNGC	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	311, 451
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	6 cut(s)	57, 59, 83, 204, 248, 418
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	311, 451
Kzo9I	GATC	2 cut(s)	112, 348
Lsp1109I	GCAGC	1 cut(s)	437
MaeI	CTAG	4 cut(s)	12, 83, 95, 192
MaeIII	GTNAC	2 cut(s)	73, 220
MalI	GATC	2 cut(s)	114, 350
MboI	GATC	2 cut(s)	112, 348
MboII	GAAGA	2 cut(s)	98, 350
MflI	RGATCY	2 cut(s)	112, 348
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	4 cut(s)	365, 377, 387, 460
MnlI	CCTC	8 cut(s)	76, 91, 211, 241, 268, 315, 424, 466
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	4 cut(s)	26, 27, 185, 354
MvaI	CCWGG	2 cut(s)	185, 354
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	2 cut(s)	26, 27
NdeII	GATC	2 cut(s)	112, 348
NlaIII	CATG	2 cut(s)	311, 451
NlaIV	GGNNCC	2 cut(s)	31, 229
PaeR7I	CTCGAG	1 cut(s)	57
PasI	CCCWGGG	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	183, 352
PspGI	CCWGG	2 cut(s)	183, 352
PspN4I	GGNNCC	2 cut(s)	31, 229
PspPI	GGNCC	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	2 cut(s)	112, 348
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	2 cut(s)	112, 348
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	1 cut(s)	10
ScrFI	CCNGG	4 cut(s)	26, 27, 185, 354
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	6 cut(s)	41, 147, 229, 414, 430, 477
Sfr274I	CTCGAG	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	57
SmaI	CCCGGG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SpeI	ACTAGT	1 cut(s)	191
Sse9I	AATT	4 cut(s)	365, 377, 387, 460
SspMI	CTAG	4 cut(s)	12, 83, 95, 192
StyD4I	CCNGG	4 cut(s)	24, 25, 183, 352
StyI	CCWWGG	1 cut(s)	141
TaqI	TCGA	3 cut(s)	58, 372, 419
TasI	AATT	4 cut(s)	365, 377, 387, 460
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	1 cut(s)	425
TspMI	CCCGGG	1 cut(s)	25
TspRI	CASTG	1 cut(s)	51
XapI	RAATTY	1 cut(s)	460
XbaI	TCTAGA	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	57
XmaI	CCCGGG	1 cut(s)	25
XspI	CTAG	4 cut(s)	12, 83, 95, 192
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.