AT1G76260

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010031
Physical Location & Seq
Forward (+)
28610193 .. 28613263
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76260.1

Sequence Viewer

Length: 1053 bp
ATGCAAGGAGGATCATCGGGTATTGGTTATGGTTTGAAGTATCAGGCCAGATGTATATCGGATGTTAAAGCAGATAGAGATCACACTAGCTTCCTCACTGGAACCCTAAGCTTGAAAGAAGAAAATGAGGTTCATTTGCTTCGTTTGTCTTCTGGTGGATCTGAGCTGTTATGTGAGGGATTGTTCTCGCATCCTAATGAAATTTGGGACCTTGCTTCTTCCCCTTTTGATCAACGCATTTTCTCTACTGTCTTCTCCACTGGCGACTCATATGGAGCAGCAATATGGCAGATTCCTGAGCCATATGGTCAATCGAATTCTTCAACATTGGAATGTGTTGCTTCCCTTGATGCACATGTTGGTAAGATTAATTGCGTTCTTTGGTGTCCCTCTGGAAATTCTGACAAGTTAATCAGCATGGATGAACAAAATCTTGTCTTCTGGAGTTTAGACTCTTCAAAGAAAAGTGCGGAGGTTTTATCTAAGGAGTCAGCTGGTATGCGTCATTCTTTATCTGGTGGAGCATGGAATCCACATGATGTGAATTCTGTTGCAGCAACTTCTGAATCATCTATCCAGTTTTGGGACTTACGTACTATGAAGAAGAATAATTCAATTGAACGTGCCCATGTACGTAATGTTGACTACAATCTCAAGAGAGAACATATACTCGTTTCTGCGGATGATGAATCTGGTATACATCTCTGGGATCTTCGGAAGACAAAGTTTCCTGTGCAAGAGCTCCCTGGTCATACACACTGGACATGGGCTGTCAGGTGTAACCCTGAGTATGAAGAGCTAATTCTGAGCGTTGGAACAGACTCAGCTGTCAACTTGTGGTTTGCTTCAGCATCTAGTGAGCATAAAACATCAGAAAGCCCGGTGGAAGCATCACGTCAGCGTGTGAACCCGTTACTAAACTCTTATACTGACTACGAAGACAGTGTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGGATTTTTGCATCATTGTCATATGACGGTAGGGTTGTGATCGAATCCGTCAAGCCTTTCCTGCCAAGAAGATAG

Protein Analysis

350

Amino Acids

39.05

Weight (kDa)

5.39

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_EIPR1 PF23609 5 - 280 3.1e-95 EIPR1 beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 79 - 165 9.4e-06 CAF1B/HIR1 beta-propeller domain
WD40_Prp19 PF24814 82 - 242 1.3e-08 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 87 - 291 1.8e-16 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 143 - 290 2.1e-08 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 144 - 331 3.3e-11 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 184 - 291 8.8e-06 WDHD1 first WD40 domain
WDR55 PF24796 185 - 278 3.5e-07 WDR55
Beta-prop_DCAF4 PF23761 218 - 302 8.1e-07 DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_WDR5 PF25175 220 - 290 2.5e-07 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 827
AccI GTMKAC 2 cut(s) 697, 948
AccII CGCG 1 cut(s) 970
AciI CCGC 2 cut(s) 470, 680
AclWI GGATC 3 cut(s) 19, 166, 717
AcsI RAATTY 4 cut(s) 201, 316, 397, 544
AcuI CTGAAG 1 cut(s) 831
AfaI GTAC 2 cut(s) 595, 633
AfiI CCNNNNNNNGG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 6 cut(s) 37, 115, 324, 459, 615, 620
AjiI CACGTC 1 cut(s) 896
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 8 cut(s) 90, 111, 166, 494, 742, 799, 827, 966
AluI AGCT 8 cut(s) 90, 111, 166, 494, 742, 799, 827, 966
Alw21I GWGCWC 2 cut(s) 744, 968
AlwI GGATC 3 cut(s) 19, 166, 717
AoxI GGCC 2 cut(s) 45, 952
ApeKI GCWGC 2 cut(s) 278, 554
ApoI RAATTY 4 cut(s) 201, 316, 397, 544
ArsI GACNNNNNNTTYG 2 cut(s) 930, 962
AseI ATTAAT 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 881
AvaII GGWCC 1 cut(s) 208
BaeGI GKGCMC 1 cut(s) 628
BanII GRGCYC 2 cut(s) 744, 968
BbsI GAAGAC 5 cut(s) 141, 244, 430, 725, 945
Bbv12I GWGCWC 2 cut(s) 744, 968
BbvI GCAGC 2 cut(s) 290, 566
BceAI ACGGC 1 cut(s) 967
BciT130I CCWGG 1 cut(s) 747
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 881
BfaI CTAG 2 cut(s) 87, 855
BisI GCNGC 2 cut(s) 279, 555
BlsI GCNGC 2 cut(s) 280, 556
Bme1390I CCNGG 2 cut(s) 747, 881
Bme18I GGWCC 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 896
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 103, 209
BmrFI CCNGG 2 cut(s) 747, 881
BmsI GCATC 5 cut(s) 199, 340, 860, 899, 998
BpiI GAAGAC 5 cut(s) 141, 244, 430, 725, 945
BpmI CTGGAG 1 cut(s) 463
Bpu10I CCTNAGC 2 cut(s) 107, 297
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 881
BsaAI YACGTR 2 cut(s) 593, 635
BsaBI GATNNNNATC 2 cut(s) 55, 78
BsaJI CCNNGG 2 cut(s) 745, 977
BsaXI ACNNNNNCTCC 2 cut(s) 955, 985
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse1I ACTGG 4 cut(s) 103, 265, 577, 764
Bse8I GATNNNNATC 2 cut(s) 55, 78
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 2 cut(s) 745, 977
BseGI GGATG 4 cut(s) 67, 190, 427, 688
BseJI GATNNNNATC 2 cut(s) 55, 78
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 5 cut(s) 153, 288, 777, 797, 837
BseNI ACTGG 4 cut(s) 103, 265, 577, 764
BseSI GKGCMC 1 cut(s) 628
BseXI GCAGC 2 cut(s) 290, 566
Bsh1236I CGCG 1 cut(s) 970
BshFI GGCC 2 cut(s) 47, 954
BsiHKAI GWGCWC 2 cut(s) 744, 968
BsiSI CCGG 1 cut(s) 881
BslFI GGGAC 3 cut(s) 221, 372, 599
BslI CCNNNNNNNGG 1 cut(s) 583
BsmFI GGGAC 3 cut(s) 221, 372, 599
BsnI GGCC 2 cut(s) 47, 954
Bsp1286I GDGCHC 3 cut(s) 628, 744, 968
Bsp143I GATC 6 cut(s) 11, 79, 158, 229, 709, 1017
BspACI CCGC 2 cut(s) 470, 680
BspANI GGCC 2 cut(s) 47, 954
BspCNI CTCAG 5 cut(s) 154, 289, 778, 798, 836
BspFNI CGCG 1 cut(s) 970
BspLI GGNNCC 2 cut(s) 103, 209
BspPI GGATC 3 cut(s) 19, 166, 717
BspQI GCTCTTC 1 cut(s) 789
BsrI ACTGG 4 cut(s) 103, 265, 577, 764
BssECI CCNNGG 2 cut(s) 745, 977
BssMI GATC 6 cut(s) 11, 79, 158, 229, 709, 1017
BssNAI GTATAC 1 cut(s) 698
BssT1I CCWWGG 1 cut(s) 977
Bst1107I GTATAC 1 cut(s) 698
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 3 cut(s) 250, 944, 1007
Bst6I CTCTTC 2 cut(s) 460, 789
BstBAI YACGTR 2 cut(s) 593, 635
BstC8I GCNNGC 1 cut(s) 968
BstDEI CTNAG 7 cut(s) 107, 162, 297, 483, 786, 806, 823
BstF5I GGATG 4 cut(s) 67, 190, 427, 688
BstFNI CGCG 1 cut(s) 970
BstKTI GATC 6 cut(s) 14, 82, 161, 232, 712, 1020
BstMBI GATC 6 cut(s) 11, 79, 158, 229, 709, 1017
BstMWI GCNNNNNNNGC 1 cut(s) 1039
BstNI CCWGG 1 cut(s) 747
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 745, 879
BstSLI GKGCMC 1 cut(s) 628
BstSNI TACGTA 2 cut(s) 593, 635
BstUI CGCG 1 cut(s) 970
BstV1I GCAGC 2 cut(s) 290, 566
BstV2I GAAGAC 5 cut(s) 141, 244, 430, 725, 945
BstX2I RGATCY 2 cut(s) 158, 709
BstYI RGATCY 2 cut(s) 158, 709
BstZ17I GTATAC 1 cut(s) 698
BsuRI GGCC 2 cut(s) 47, 954
BtrI CACGTC 1 cut(s) 896
BtsCI GGATG 4 cut(s) 67, 190, 427, 688
BtsIMutI CAGTG 4 cut(s) 96, 258, 757, 949
Cac8I GCNNGC 1 cut(s) 968
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 491
Csp6I GTAC 2 cut(s) 594, 632
CviAII CATG 6 cut(s) 356, 418, 525, 536, 629, 765
CviQI GTAC 2 cut(s) 594, 632
DdeI CTNAG 7 cut(s) 107, 162, 297, 483, 786, 806, 823
DpnI GATC 6 cut(s) 13, 81, 160, 231, 711, 1019
DpnII GATC 6 cut(s) 11, 79, 158, 229, 709, 1017
DrdI GACNNNNNNGTC 1 cut(s) 827
DseDI GACNNNNNNGTC 1 cut(s) 827
Eam1104I CTCTTC 2 cut(s) 460, 789
EarI CTCTTC 2 cut(s) 460, 789
Ecl136II GAGCTC 2 cut(s) 742, 966
Eco105I TACGTA 2 cut(s) 593, 635
Eco130I CCWWGG 1 cut(s) 977
Eco24I GRGCYC 2 cut(s) 744, 968
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 2 cut(s) 742, 966
Eco57I CTGAAG 1 cut(s) 831
EcoICRI GAGCTC 2 cut(s) 742, 966
EcoO109I RGGNCCY 1 cut(s) 208
EcoRI GAATTC 2 cut(s) 316, 544
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 977
EcoT38I GRGCYC 2 cut(s) 744, 968
ErhI CCWWGG 1 cut(s) 977
FaeI CATG 6 cut(s) 359, 421, 528, 539, 632, 768
FaqI GGGAC 3 cut(s) 221, 372, 599
FatI CATG 6 cut(s) 355, 417, 524, 535, 628, 764
FauNDI CATATG 3 cut(s) 271, 304, 1000
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 2 cut(s) 697, 948
Fnu4HI GCNGC 2 cut(s) 279, 555
FokI GGATG 4 cut(s) 74, 177, 434, 695
FriOI GRGCYC 2 cut(s) 744, 968
Fsp4HI GCNGC 2 cut(s) 279, 555
FspBI CTAG 2 cut(s) 87, 855
GluI GCNGC 2 cut(s) 279, 555
GsuI CTGGAG 1 cut(s) 463
HaeIII GGCC 2 cut(s) 47, 954
HapII CCGG 1 cut(s) 881
HgaI GACGC 1 cut(s) 491
Hin1II CATG 6 cut(s) 359, 421, 528, 539, 632, 768
HincII GTYRAC 2 cut(s) 643, 832
HindII GTYRAC 2 cut(s) 643, 832
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 9 cut(s) 266, 292, 452, 488, 529, 566, 689, 821, 1022
HpaII CCGG 1 cut(s) 881
Hpy166II GTNNAC 5 cut(s) 643, 698, 832, 907, 949
Hpy188I TCNGA 7 cut(s) 61, 163, 403, 565, 717, 807, 874
Hpy188III TCNNGA 4 cut(s) 296, 393, 442, 655
Hpy8I GTNNAC 5 cut(s) 643, 698, 832, 907, 949
HpyCH4III ACNGT 3 cut(s) 250, 944, 1007
HpyCH4IV ACGT 4 cut(s) 592, 622, 634, 895
HpyCH4V TGCA 5 cut(s) 4, 353, 554, 736, 989
HpyF10VI GCNNNNNNNGC 1 cut(s) 1039
HpyF3I CTNAG 7 cut(s) 107, 162, 297, 483, 786, 806, 823
HpySE526I ACGT 4 cut(s) 592, 622, 634, 895
Hsp92II CATG 6 cut(s) 359, 421, 528, 539, 632, 768
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 6 cut(s) 11, 79, 158, 229, 709, 1017
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 4 cut(s) 275, 521, 747, 963
Lsp1109I GCAGC 2 cut(s) 290, 566
LweI GCATC 5 cut(s) 199, 340, 860, 899, 998
MaeI CTAG 2 cut(s) 87, 855
MaeII ACGT 4 cut(s) 592, 622, 634, 895
MaeIII GTNAC 2 cut(s) 779, 912
MalI GATC 6 cut(s) 13, 81, 160, 231, 711, 1019
MboI GATC 6 cut(s) 11, 79, 158, 229, 709, 1017
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 2 cut(s) 158, 709
MhlI GDGCHC 3 cut(s) 628, 744, 968
MluCI AATT 8 cut(s) 201, 316, 370, 397, 544, 610, 615, 801
MlyI GAGTC 4 cut(s) 260, 446, 497, 815
MmeI TCCRAC 1 cut(s) 793
MnlI CCTC 5 cut(s) 104, 121, 169, 400, 466
MseI TTAA 3 cut(s) 66, 369, 410
MslI CAYNNNNRTG 2 cut(s) 195, 331
MspA1I CMGCKG 2 cut(s) 494, 827
MspI CCGG 1 cut(s) 881
MspR9I CCNGG 2 cut(s) 747, 881
MunI CAATTG 1 cut(s) 615
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 1 cut(s) 970
MwoI GCNNNNNNNGC 1 cut(s) 1039
NciI CCSGG 1 cut(s) 881
NdeI CATATG 3 cut(s) 271, 304, 1000
NdeII GATC 6 cut(s) 11, 79, 158, 229, 709, 1017
NlaIII CATG 6 cut(s) 359, 421, 528, 539, 632, 768
NlaIV GGNNCC 2 cut(s) 103, 209
NspI RCATGY 1 cut(s) 359
PciI ACATGT 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 789
PfeI GAWTC 5 cut(s) 292, 529, 566, 689, 1022
PflFI GACNNNGTC 1 cut(s) 944
PkrI GCNGC 2 cut(s) 280, 556
PleI GAGTC 4 cut(s) 260, 446, 496, 815
PpsI GAGTC 4 cut(s) 260, 446, 496, 815
Ppu21I YACGTR 2 cut(s) 593, 635
PpuMI RGGWCCY 1 cut(s) 208
PscI ACATGT 1 cut(s) 355
PshBI ATTAAT 1 cut(s) 369
Psp124BI GAGCTC 2 cut(s) 744, 968
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 745
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 2 cut(s) 103, 209
PspPI GGNCC 1 cut(s) 208
PspPPI RGGWCCY 1 cut(s) 208
PsuI RGATCY 2 cut(s) 158, 709
PsyI GACNNNGTC 1 cut(s) 944
PvuII CAGCTG 2 cut(s) 494, 827
RsaI GTAC 2 cut(s) 595, 633
RsaNI GTAC 2 cut(s) 594, 632
RseI CAYNNNNRTG 2 cut(s) 195, 331
SacI GAGCTC 2 cut(s) 744, 968
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 3 cut(s) 66, 369, 410
SatI GCNGC 2 cut(s) 279, 555
Sau3AI GATC 6 cut(s) 11, 79, 158, 229, 709, 1017
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 4 cut(s) 260, 446, 497, 815
ScrFI CCNGG 2 cut(s) 747, 881
SduI GDGCHC 3 cut(s) 628, 744, 968
SfaNI GCATC 5 cut(s) 199, 340, 860, 899, 998
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 195, 331
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
SnaBI TACGTA 2 cut(s) 593, 635
Sse9I AATT 8 cut(s) 201, 316, 370, 397, 544, 610, 615, 801
SsiI CCGC 2 cut(s) 470, 680
SspMI CTAG 2 cut(s) 87, 855
SstI GAGCTC 2 cut(s) 744, 968
StyD4I CCNGG 2 cut(s) 745, 879
StyI CCWWGG 1 cut(s) 977
TaaI ACNGT 3 cut(s) 250, 944, 1007
TaiI ACGT 4 cut(s) 595, 625, 637, 898
TaqI TCGA 2 cut(s) 314, 1020
TasI AATT 8 cut(s) 201, 316, 370, 397, 544, 610, 615, 801
TfiI GAWTC 5 cut(s) 292, 529, 566, 689, 1022
Tru1I TTAA 3 cut(s) 66, 369, 410
Tru9I TTAA 3 cut(s) 66, 369, 410
TscAI CASTG 4 cut(s) 103, 265, 764, 949
TseI GCWGC 2 cut(s) 278, 554
TspDTI ATGAA 6 cut(s) 122, 213, 438, 614, 702, 807
TspGWI ACGGA 1 cut(s) 1015
TspRI CASTG 4 cut(s) 103, 265, 764, 949
Tth111I GACNNNGTC 1 cut(s) 944
VpaK11BI GGWCC 1 cut(s) 208
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 4 cut(s) 201, 316, 397, 544
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 2 cut(s) 697, 948
XspI CTAG 2 cut(s) 87, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.