Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010031

Physical Location & Seq

Genomic Coordinates Forward (+)

48120780 .. 48122379

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0328300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTGCTTCAGTCGACACTCCATCACCGGTTCAACTCAACAAGGACTCCTCCATCTTCTTCACTGCTTCCGCTTCTTCTCCTCTCTTCACTCCCTCCTCCGATAAGCGCTTCTGGAGCTCTCTACAGACCCGAATCGATTCCATTCTCCAAGACCGCAACTCCAGAATCCCAATGGCTCAAAACCCACCAAATCCTGATCCTTCTCTACATATGAATGTTGGAGAAGCGAAACGTGGGAGAGGATTGAAGGAAGACTCGATGCTTTTGATGAGAGGGTTTGATTCGATTGCTCACACTCTGTCTCAGCTGTCTGACACTTTAGACAATGCTCTTCAGGGAGTTAATGATCTAGCTAAGCCACCCACATTGACAGAGATATTCCACAGCCAATTGAGCAACTCAGAGAGCAAAGAGGAGGGCTCAGAAGAACAACAACAACAGAAGGCAGAAGAGTCACATGTAGGATTGAAGAGGAAGTACGACAACAGTCATTGCTTGGAGGAACAAGGGGATGGTGATGATTCACAACATGAAAATGAGCAAGGCCCAAAAGATGGGAAGCTGAAGAAAGCCAAAAATCTGGCAATTTCTATGGCAACGAAGGCGGCTTCATTTGCTAGGGAACTCAAGTTGATTAGGTCGGATTTATCGTTTATGCAAGAGCGGTGTGTTTTGCTGGAGGAGGAGAATAGGAGGCTCAGAGATGGATTTGACAAGGGGTTGAGGCCTGAGGAAGATGATTTGGTGAGGCTTCAATTGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAATGAGAATGCAAATCTGGTTAGAGAAAACCAATGCCTCCACCAACTTGTGGAGTACCACCAGCTTACCTCTCAAGACCTGTCTGCTTCATCATATGAACAAGTTATACAAGGGTTGTGCTTAGACTTCTCGTCTCCACCGCCACCAATACCAGAAGAGGAGGCAGCAAACGATGAAGAGAGTTTAGAATCTGAAGATGATGCAACAACCCCAAGAACTAATCTTTTTGGCTTACACTCATCTTTTGTTAGCAAGGTTGACAATACAGGCCCTGCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016567 GO:0019538 GO:0023051 GO:0023057 GO:0031461 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0080008 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

358

Amino Acids

39.76

Weight (kDa)

4.8

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20540 AT1G76260
fragaria_vesca	FvH4_2g37550 FvH4_2g37550 FvH4_2g37550
malus_domestica	MD08G1003000.v1.1 MD15G1002700.v1.1
prunus_persica	Prupe.1G355000_v2.0.a1 Prupe.1G355000_v2.0.a1 Prupe.1G355000_v2.0.a1
pyrus_communis	pycom15g00160
rosa_chinensis	RchiOBHm_Chr6g0304181
rosa_laevigata	RLG00000011008
rosa_multiflora	Rmu_ssc0000218.1_g000010
rosa_roxburghii	Rroxscaffold_7G00163990
rosa_rugosa	Rorug06G0328200 Rorug06G0328300
rosa_samantha	Rh6AG442400 Rh6BG460300 Rh6CG454600
rosa_wichuraiana	Rw6G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	557, 844
AccBSI	CCGCTC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	5 cut(s)	72, 157, 608, 667, 935
AclWI	GGATC	1 cut(s)	194
AcuI	CTGAAG	3 cut(s)	320, 587, 1008
AfaI	GTAC	2 cut(s)	482, 851
AfeI	AGCGCT	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	557, 844
AflIII	ACRYGT	1 cut(s)	460
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	35, 250, 472, 758
AhdI	GACNNNNNGTC	1 cut(s)	925
AluBI	AGCT	6 cut(s)	120, 310, 356, 565, 776, 859
AluI	AGCT	6 cut(s)	120, 310, 356, 565, 776, 859
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	2 cut(s)	309, 933
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	1067
Aor51HI	AGCGCT	1 cut(s)	110
AoxI	GGCC	3 cut(s)	547, 728, 1063
ApeKI	GCWGC	3 cut(s)	5, 959, 1070
AsiGI	ACCGGT	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	548, 1064
AsuHPI	GGTGA	3 cut(s)	18, 530, 760
AsuNHI	GCTAGC	1 cut(s)	772
AxyI	CCTNAGG	1 cut(s)	732
BanII	GRGCYC	2 cut(s)	122, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	464, 496
BbsI	GAAGAC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	971
BccI	CCATC	5 cut(s)	31, 62, 509, 551, 701
BcoDI	GTCTC	2 cut(s)	309, 933
BfaI	CTAG	3 cut(s)	353, 621, 773
BfmI	CTRYAG	2 cut(s)	125, 1068
BfoI	RGCGCY	1 cut(s)	112
BisI	GCNGC	4 cut(s)	6, 609, 960, 1071
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	4 cut(s)	7, 610, 961, 1072
BmeRI	GACNNNNNGTC	1 cut(s)	925
BmgT120I	GGNCC	2 cut(s)	548, 1064
BmsI	GCATC	2 cut(s)	252, 985
BmtI	GCTAGC	1 cut(s)	776
BoxI	GACNNNNGTC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	261
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	3 cut(s)	136, 148, 701
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	2 cut(s)	614, 852
Bsa29I	ATCGAT	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 146, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 844
Bse118I	RCCGGY	1 cut(s)	28
Bse21I	CCTNAGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	493
BseCI	ATCGAT	1 cut(s)	138
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	2 cut(s)	557, 844
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	6 cut(s)	320, 417, 438, 715, 723, 768
BseRI	GAGGAG	7 cut(s)	40, 72, 88, 431, 698, 701, 968
BseXI	GCAGC	1 cut(s)	971
BshFI	GGCC	3 cut(s)	549, 730, 1065
BshTI	ACCGGT	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	557, 844
BsmAI	GTCTC	2 cut(s)	309, 933
BsmBI	CGTCTC	1 cut(s)	933
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	3 cut(s)	549, 730, 1065
Bsp1286I	GDGCHC	2 cut(s)	122, 425
Bsp143I	GATC	2 cut(s)	199, 349
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	5 cut(s)	72, 157, 608, 667, 935
BspANI	GGCC	3 cut(s)	549, 730, 1065
BspCNI	CTCAG	6 cut(s)	319, 416, 437, 714, 724, 769
BspDI	ATCGAT	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	1072
BspOI	GCTAGC	1 cut(s)	776
BspPI	GGATC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	2 cut(s)	199, 349
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	6 cut(s)	92, 339, 447, 467, 945, 966
BstC8I	GCNNGC	1 cut(s)	774
BstDEI	CTNAG	8 cut(s)	306, 357, 403, 424, 701, 732, 777, 916
BstF5I	GGATG	1 cut(s)	520
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	202, 352
BstMAI	GTCTC	2 cut(s)	309, 933
BstMBI	GATC	2 cut(s)	199, 349
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 396, 605, 617, 773
BstNSI	RCATGY	1 cut(s)	464
BstPAI	GACNNNNGTC	1 cut(s)	489
BstSFI	CTRYAG	2 cut(s)	125, 1068
BstV1I	GCAGC	1 cut(s)	971
BstV2I	GAAGAC	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	583
Bsu15I	ATCGAT	1 cut(s)	138
Bsu36I	CCTNAGG	1 cut(s)	732
BsuRI	GGCC	3 cut(s)	549, 730, 1065
BsuTUI	ATCGAT	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	520
BtsI	GCAGTG	2 cut(s)	63, 767
BtsIMutI	CAGTG	2 cut(s)	63, 767
Cac8I	GCNNGC	1 cut(s)	774
CaiI	CAGNNNCTG	1 cut(s)	1067
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	548, 1064
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	481, 850
CspAI	ACCGGT	1 cut(s)	28
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	2 cut(s)	461, 533
CviQI	GTAC	2 cut(s)	481, 850
DdeI	CTNAG	8 cut(s)	306, 357, 403, 424, 701, 732, 777, 916
DpnI	GATC	2 cut(s)	201, 351
DpnII	GATC	2 cut(s)	199, 349
DriI	GACNNNNNGTC	1 cut(s)	925
Eam1104I	CTCTTC	6 cut(s)	92, 339, 447, 467, 945, 966
Eam1105I	GACNNNNNGTC	1 cut(s)	925
EarI	CTCTTC	6 cut(s)	92, 339, 447, 467, 945, 966
Ecl136II	GAGCTC	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	730
Eco24I	GRGCYC	2 cut(s)	122, 425
Eco47III	AGCGCT	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	3 cut(s)	320, 587, 1008
Eco81I	CCTNAGG	1 cut(s)	732
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	1064
EcoT38I	GRGCYC	2 cut(s)	122, 425
Esp3I	CGTCTC	1 cut(s)	933
FaeI	CATG	2 cut(s)	464, 536
FaiI	YATR	9 cut(s)	213, 215, 462, 534, 596, 659, 889, 891, 902
FatI	CATG	2 cut(s)	460, 532
FauNDI	CATATG	2 cut(s)	213, 889
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	4 cut(s)	6, 609, 960, 1071
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	2 cut(s)	122, 425
Fsp4HI	GCNGC	4 cut(s)	6, 609, 960, 1071
FspBI	CTAG	3 cut(s)	353, 621, 773
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	4 cut(s)	6, 609, 960, 1071
GsuI	CTGGAG	3 cut(s)	136, 148, 701
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	549, 730, 1065
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	464, 536
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	2 cut(s)	16, 1054
HindII	GTYRAC	2 cut(s)	16, 1054
HinfI	GANTC	9 cut(s)	47, 135, 140, 168, 257, 284, 455, 524, 983
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	3 cut(s)	18, 530, 760
Hpy166II	GTNNAC	2 cut(s)	16, 1054
Hpy188I	TCNGA	7 cut(s)	103, 316, 406, 427, 646, 704, 988
Hpy188III	TCNNGA	5 cut(s)	115, 165, 197, 786, 869
Hpy8I	GTNNAC	2 cut(s)	16, 1054
HpyAV	CCTTC	4 cut(s)	213, 244, 439, 598
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	661, 806, 998, 1070
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 396, 605, 617, 773
HpyF3I	CTNAG	8 cut(s)	306, 357, 403, 424, 701, 732, 777, 916
HpySE526I	ACGT	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	464, 536
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	199, 349
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	1 cut(s)	971
LweI	GCATC	2 cut(s)	252, 985
MaeI	CTAG	3 cut(s)	353, 621, 773
MaeII	ACGT	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	2 cut(s)	201, 351
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	2 cut(s)	199, 349
MfeI	CAATTG	2 cut(s)	392, 758
MhlI	GDGCHC	2 cut(s)	122, 425
MluCI	AATT	3 cut(s)	392, 588, 758
MlyI	GAGTC	3 cut(s)	41, 251, 464
MmeI	TCCRAC	2 cut(s)	202, 624
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	2 cut(s)	216, 537
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	1 cut(s)	29
MunI	CAATTG	2 cut(s)	392, 758
Mva1269I	GAATGC	1 cut(s)	808
MwoI	GCNNNNNNNGC	5 cut(s)	117, 396, 605, 617, 773
NdeI	CATATG	2 cut(s)	213, 889
NdeII	GATC	2 cut(s)	199, 349
NheI	GCTAGC	1 cut(s)	772
NlaIII	CATG	2 cut(s)	464, 536
NmuCI	GTSAC	1 cut(s)	456
NspI	RCATGY	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	730
PciI	ACATGT	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	650
PctI	GAATGC	1 cut(s)	808
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	6 cut(s)	135, 140, 168, 284, 524, 983
PflMI	CCANNNNNTGG	2 cut(s)	557, 844
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	4 cut(s)	7, 610, 961, 1072
PleI	GAGTC	3 cut(s)	41, 251, 463
PpsI	GAGTC	3 cut(s)	41, 251, 463
PscI	ACATGT	1 cut(s)	460
PshAI	GACNNNNGTC	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	548, 1064
PsrI	GAACNNNNNNTAC	2 cut(s)	885, 917
PstI	CTGCAG	1 cut(s)	1072
PstNI	CAGNNNCTG	1 cut(s)	1067
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	2 cut(s)	482, 851
RsaNI	GTAC	2 cut(s)	481, 850
RseI	CAYNNNNRTG	2 cut(s)	216, 537
SacI	GAGCTC	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	4 cut(s)	6, 609, 960, 1071
Sau3AI	GATC	2 cut(s)	199, 349
Sau96I	GGNCC	2 cut(s)	548, 1064
SchI	GAGTC	3 cut(s)	41, 251, 464
SduI	GDGCHC	2 cut(s)	122, 425
SfaNI	GCATC	2 cut(s)	252, 985
SfcI	CTRYAG	2 cut(s)	125, 1068
SmiMI	CAYNNNNRTG	2 cut(s)	216, 537
SmlI	CTYRAG	2 cut(s)	629, 867
SmoI	CTYRAG	2 cut(s)	629, 867
Sse9I	AATT	3 cut(s)	392, 588, 758
SseBI	AGGCCT	1 cut(s)	730
SsiI	CCGC	5 cut(s)	72, 157, 608, 667, 935
SspMI	CTAG	3 cut(s)	353, 621, 773
SstI	GAGCTC	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	730
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	238
TaqI	TCGA	4 cut(s)	15, 138, 260, 287
TasI	AATT	3 cut(s)	392, 588, 758
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	6 cut(s)	135, 140, 168, 284, 524, 983
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	2 cut(s)	70, 774
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	3 cut(s)	5, 959, 1070
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	6 cut(s)	230, 549, 603, 873, 906, 984
TspRI	CASTG	2 cut(s)	70, 774
Van91I	CCANNNNNTGG	2 cut(s)	557, 844
XceI	RCATGY	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	3 cut(s)	353, 621, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.