Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010031

Physical Location & Seq

Genomic Coordinates Reverse (-)

67115003 .. 67120295

Gene Structure 5293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG460300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCAAGGAGGATCATCGGGCATCGGATACGGTCTCAAATACCAGGCTAGATGTATATCAGATGTTAAAGCAGACACAGATCACACTAGCTTCATCACCGGCACTCTTAGTCTCAGAGAAGAAAATGAGGTGCATTTGATTCGGCTCTCTTCGGATGGAACTGAACTGGTGTGTGAGGGCTTGTTTTCGCACCCCAATGAGATCTGGGACATTTCGTCCTGTCCATTCGACCAGCGTATTTTCTCTACTGTTTATTCTACTGGTGAATCATATGGAGCATCAATATGGCAGATCCCTGAGTTATATGGTGAATTAAATTCTCCTCAGTTGGAAAGAATTACCACCCTTGACGGGGAAGTTGGCAAAATCAAATCCATTATTTGGTGGCCATCTGGAAGGCATGATAAGCTGATCAGCATTGATGAACAAAATATTTCCTTGTGGAGCTTAGATCTTTCCAAAAAAACTGCTCAGGTACAATCACAGGAGTCAGCTGGTCTTGTTGCTCAATCTGGTGGAGCATGGGATCCGCATGACATGAATGCTGTTGCAGTAACGTGTGAATCATCCATTCAGTTTTGGGATTTACGGACAATGAAGAAGACAAATTCAATTGAACATGCTCACGTCCGCAATGTTGATTATAATCCCAAGAAGACACATATACTTATGACTGCAGAAGATGAATCTGGGATTCGCATGTGGGATGTGAGGAAGCCAAAGGTCCCCATCCTGGAACTTCCTGGACACACACACTGGACATGGACTGTCAGGTGCAACCCTGAGTATGACGGGCTGATTCTGAGTTCTGGTACGGACTCGACAGTCAACCTGTGGTTAGCATCTGCGCCTAGCAACAATGAATCAATAACTGAAAGCTTTGTAGAGTCACCAAGTAAGCGGATTGATCCATTGCTCCAGTCTTACAGTGATTATGAAGACAGTATCTATGGCCTCGCTTGGAGCTCTCGTGAGCCTTGGATATTTGCATCACTATCCTATGATGGGAGGGTGGTTGTAGAATCAGTGAAACCATTTCTCTCAAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016567 GO:0019538 GO:0023051 GO:0023057 GO:0031461 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0080008 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

350

Amino Acids

39.28

Weight (kDa)

5.05

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EIPR1	PF23609	5 - 279	6.7e-99	EIPR1 beta-propeller
WD40_Prp19	PF24814	83 - 241	1.3e-06	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	106 - 281	2.3e-17	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	143 - 331	3e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	183 - 279	3e-08	WDR3 first beta-propeller domain
WDR55	PF24796	184 - 273	5.3e-06	WDR55
Beta-prop_WDR5	PF25175	187 - 282	9.8e-10	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20540 AT1G76260
fragaria_vesca	FvH4_2g37550 FvH4_2g37550 FvH4_2g37550
malus_domestica	MD08G1003000.v1.1 MD15G1002700.v1.1
prunus_persica	Prupe.1G355000_v2.0.a1 Prupe.1G355000_v2.0.a1 Prupe.1G355000_v2.0.a1
pyrus_communis	pycom15g00160
rosa_chinensis	RchiOBHm_Chr6g0304181
rosa_laevigata	RLG00000011008
rosa_multiflora	Rmu_ssc0000218.1_g000010
rosa_roxburghii	Rroxscaffold_7G00163990
rosa_rugosa	Rorug06G0328200 Rorug06G0328300
rosa_samantha	Rh6AG442400 Rh6BG460300 Rh6CG454600
rosa_wichuraiana	Rw6G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AasI	GACNNNNNNGTC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	381
AciI	CCGC	3 cut(s)	530, 631, 901
AclWI	GGATC	5 cut(s)	19, 286, 521, 534, 902
AcoI	YGGCCR	1 cut(s)	386
AcsI	RAATTY	2 cut(s)	316, 607
AfaI	GTAC	2 cut(s)	477, 814
AfiI	CCNNNNNNNGG	5 cut(s)	351, 352, 381, 733, 1005
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	612, 617
AhdI	GACNNNNNGTC	1 cut(s)	214
AjiI	CACGTC	1 cut(s)	628
AjnI	CCWGG	3 cut(s)	42, 732, 742
AluBI	AGCT	6 cut(s)	90, 409, 447, 494, 879, 966
AluI	AGCT	6 cut(s)	90, 409, 447, 494, 879, 966
Alw21I	GWGCWC	1 cut(s)	968
Alw26I	GTCTC	2 cut(s)	38, 116
AlwI	GGATC	5 cut(s)	19, 286, 521, 534, 902
AoxI	GGCC	2 cut(s)	386, 952
ApoI	RAATTY	2 cut(s)	316, 607
AspLEI	GCGC	1 cut(s)	850
AspS9I	GGNCC	1 cut(s)	724
AsuHPI	GGTGA	4 cut(s)	88, 275, 320, 882
AvaII	GGWCC	1 cut(s)	724
BalI	TGGCCA	1 cut(s)	388
BamHI	GGATCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	968
BauI	CACGAG	1 cut(s)	969
BbsI	GAAGAC	3 cut(s)	608, 662, 945
Bbv12I	GWGCWC	1 cut(s)	968
BccI	CCATC	4 cut(s)	149, 397, 737, 998
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	3 cut(s)	44, 734, 744
BciVI	GTATCC	1 cut(s)	20
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	38, 116
BfaI	CTAG	3 cut(s)	48, 87, 852
BfmI	CTRYAG	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	20
BglII	AGATCT	2 cut(s)	201, 451
Bme1390I	CCNGG	3 cut(s)	44, 734, 744
Bme18I	GGWCC	1 cut(s)	724
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmgBI	CACGTC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	724
BmiI	GGNNCC	2 cut(s)	528, 726
BmrFI	CCNGG	3 cut(s)	44, 734, 744
BmsI	GCATC	4 cut(s)	30, 287, 851, 998
BpiI	GAAGAC	3 cut(s)	608, 662, 945
BpmI	CTGGAG	1 cut(s)	902
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	1027
BsaBI	GATNNNNATC	2 cut(s)	55, 645
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	977
BsaXI	ACNNNNNCTCC	2 cut(s)	955, 985
Bsc4I	CCNNNNNNNGG	5 cut(s)	351, 352, 381, 733, 1005
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	4 cut(s)	171, 265, 761, 919
Bse3DI	GCAATG	2 cut(s)	640, 911
Bse8I	GATNNNNATC	2 cut(s)	55, 645
BseBI	CCWGG	3 cut(s)	44, 734, 744
BseDI	CCNNGG	1 cut(s)	977
BseGI	GGATG	4 cut(s)	160, 566, 712, 729
BseJI	GATNNNNATC	2 cut(s)	55, 645
BseLI	CCNNNNNNNGG	5 cut(s)	351, 352, 381, 733, 1005
BseMI	GCAATG	2 cut(s)	640, 911
BseMII	CTCAG	6 cut(s)	127, 288, 338, 485, 774, 794
BseNI	ACTGG	4 cut(s)	171, 265, 761, 919
BseRI	GAGGAG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	388, 954
BsiHKAI	GWGCWC	1 cut(s)	968
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	221, 710
BslI	CCNNNNNNNGG	5 cut(s)	351, 352, 381, 733, 1005
BsmAI	GTCTC	2 cut(s)	38, 116
BsmFI	GGGAC	2 cut(s)	221, 710
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	2 cut(s)	388, 954
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	968
Bsp143I	GATC	8 cut(s)	11, 79, 201, 291, 411, 451, 526, 907
BspACI	CCGC	3 cut(s)	530, 631, 901
BspANI	GGCC	2 cut(s)	388, 954
BspCNI	CTCAG	6 cut(s)	126, 289, 337, 484, 775, 795
BspLI	GGNNCC	2 cut(s)	528, 726
BspMAI	CTGCAG	1 cut(s)	679
BspPI	GGATC	5 cut(s)	19, 286, 521, 534, 902
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	640, 911
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	4 cut(s)	171, 265, 761, 919
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	977
BssMI	GATC	8 cut(s)	11, 79, 201, 291, 411, 451, 526, 907
BssSI	CACGAG	1 cut(s)	969
BssT1I	CCWWGG	1 cut(s)	977
Bst2BI	CACGAG	1 cut(s)	969
Bst2UI	CCWGG	3 cut(s)	44, 734, 744
Bst4CI	ACNGT	6 cut(s)	32, 250, 769, 826, 929, 944
Bst6I	CTCTTC	1 cut(s)	154
BstDEI	CTNAG	8 cut(s)	107, 113, 297, 324, 448, 471, 783, 803
BstF5I	GGATG	4 cut(s)	160, 566, 712, 729
BstHHI	GCGC	1 cut(s)	850
BstKTI	GATC	8 cut(s)	14, 82, 204, 294, 414, 454, 529, 910
BstMAI	GTCTC	2 cut(s)	38, 116
BstMBI	GATC	8 cut(s)	11, 79, 201, 291, 411, 451, 526, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNI	CCWGG	3 cut(s)	44, 734, 744
BstNSI	RCATGY	2 cut(s)	623, 703
BstSCI	CCNGG	3 cut(s)	42, 732, 742
BstSFI	CTRYAG	1 cut(s)	675
BstV2I	GAAGAC	3 cut(s)	608, 662, 945
BstX2I	RGATCY	4 cut(s)	201, 291, 451, 526
BstYI	RGATCY	4 cut(s)	201, 291, 451, 526
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	388, 954
BtrI	CACGTC	1 cut(s)	628
BtsCI	GGATG	4 cut(s)	160, 566, 712, 729
BtsIMutI	CAGTG	3 cut(s)	754, 934, 1032
CfoI	GCGC	1 cut(s)	850
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	476, 813
CviAII	CATG	7 cut(s)	401, 522, 533, 538, 620, 700, 762
CviQI	GTAC	2 cut(s)	476, 813
DdeI	CTNAG	8 cut(s)	107, 113, 297, 324, 448, 471, 783, 803
DpnI	GATC	8 cut(s)	13, 81, 203, 293, 413, 453, 528, 909
DpnII	GATC	8 cut(s)	11, 79, 201, 291, 411, 451, 526, 907
DrdI	GACNNNNNNGTC	1 cut(s)	824
DriI	GACNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	824
EaeI	YGGCCR	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	154
Eam1105I	GACNNNNNGTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	966
Eco130I	CCWWGG	1 cut(s)	977
Eco24I	GRGCYC	1 cut(s)	968
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	724
Eco53kI	GAGCTC	1 cut(s)	966
EcoICRI	GAGCTC	1 cut(s)	966
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRII	CCWGG	3 cut(s)	42, 732, 742
EcoT14I	CCWWGG	1 cut(s)	977
EcoT38I	GRGCYC	1 cut(s)	968
ErhI	CCWWGG	1 cut(s)	977
FaeI	CATG	7 cut(s)	404, 525, 536, 541, 623, 703, 765
FaqI	GGGAC	2 cut(s)	221, 710
FatI	CATG	7 cut(s)	400, 521, 532, 537, 619, 699, 761
FauNDI	CATATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	411
FokI	GGATG	4 cut(s)	167, 553, 716, 719
FriOI	GRGCYC	1 cut(s)	968
FspBI	CTAG	3 cut(s)	48, 87, 852
GlaI	GCGC	1 cut(s)	849
GsuI	CTGGAG	1 cut(s)	902
HaeIII	GGCC	2 cut(s)	388, 954
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	850
Hin1II	CATG	7 cut(s)	404, 525, 536, 541, 623, 703, 765
Hin6I	GCGC	1 cut(s)	848
HinP1I	GCGC	1 cut(s)	848
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	877
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	4 cut(s)	88, 275, 320, 882
Hpy166II	GTNNAC	1 cut(s)	829
Hpy188I	TCNGA	5 cut(s)	26, 61, 116, 154, 804
Hpy188III	TCNNGA	2 cut(s)	393, 971
Hpy8I	GTNNAC	1 cut(s)	829
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	6 cut(s)	32, 250, 769, 826, 929, 944
HpyCH4IV	ACGT	2 cut(s)	557, 627
HpyCH4V	TGCA	6 cut(s)	4, 133, 551, 677, 777, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	8 cut(s)	107, 113, 297, 324, 448, 471, 783, 803
HpySE526I	ACGT	2 cut(s)	557, 627
Hsp92II	CATG	7 cut(s)	404, 525, 536, 541, 623, 703, 765
HspAI	GCGC	1 cut(s)	848
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	8 cut(s)	11, 79, 201, 291, 411, 451, 526, 907
LmnI	GCTCC	5 cut(s)	275, 444, 518, 921, 963
LweI	GCATC	4 cut(s)	30, 287, 851, 998
MaeI	CTAG	3 cut(s)	48, 87, 852
MaeII	ACGT	2 cut(s)	557, 627
MaeIII	GTNAC	2 cut(s)	553, 888
MalI	GATC	8 cut(s)	13, 81, 203, 293, 413, 453, 528, 909
MboI	GATC	8 cut(s)	11, 79, 201, 291, 411, 451, 526, 907
MboII	GAAGA	7 cut(s)	131, 141, 610, 613, 667, 692, 950
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	4 cut(s)	201, 291, 451, 526
MhlI	GDGCHC	1 cut(s)	968
MlsI	TGGCCA	1 cut(s)	388
MluCI	AATT	5 cut(s)	311, 316, 336, 607, 612
MluNI	TGGCCA	1 cut(s)	388
MlyI	GAGTC	3 cut(s)	497, 812, 896
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	6 cut(s)	121, 169, 333, 705, 965, 1002
Mox20I	TGGCCA	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	388
MseI	TTAA	2 cut(s)	66, 314
MslI	CAYNNNNRTG	2 cut(s)	195, 283
Msp20I	TGGCCA	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	3 cut(s)	44, 734, 744
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	3 cut(s)	44, 734, 744
MwoI	GCNNNNNNNGC	1 cut(s)	406
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	8 cut(s)	11, 79, 201, 291, 411, 451, 526, 907
NlaIII	CATG	7 cut(s)	404, 525, 536, 541, 623, 703, 765
NlaIV	GGNNCC	2 cut(s)	528, 726
NmuCI	GTSAC	1 cut(s)	888
NspI	RCATGY	2 cut(s)	623, 703
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	8 cut(s)	139, 266, 563, 686, 694, 799, 863, 1022
PflMI	CCANNNNNTGG	1 cut(s)	381
PfoI	TCCNGGA	2 cut(s)	732, 742
PleI	GAGTC	3 cut(s)	496, 812, 895
PpsI	GAGTC	3 cut(s)	496, 812, 895
PpuMI	RGGWCCY	1 cut(s)	724
PsiI	TTATAA	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	968
Psp5II	RGGWCCY	1 cut(s)	724
Psp6I	CCWGG	3 cut(s)	42, 732, 742
PspGI	CCWGG	3 cut(s)	42, 732, 742
PspN4I	GGNNCC	2 cut(s)	528, 726
PspPI	GGNCC	1 cut(s)	724
PspPPI	RGGWCCY	1 cut(s)	724
PstI	CTGCAG	1 cut(s)	679
PsuI	RGATCY	4 cut(s)	201, 291, 451, 526
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	477, 814
RsaNI	GTAC	2 cut(s)	476, 813
RseI	CAYNNNNRTG	2 cut(s)	195, 283
SacI	GAGCTC	1 cut(s)	968
SaqAI	TTAA	2 cut(s)	66, 314
Sau3AI	GATC	8 cut(s)	11, 79, 201, 291, 411, 451, 526, 907
Sau96I	GGNCC	1 cut(s)	724
SchI	GAGTC	3 cut(s)	497, 812, 896
ScrFI	CCNGG	3 cut(s)	44, 734, 744
SduI	GDGCHC	1 cut(s)	968
SfaNI	GCATC	4 cut(s)	30, 287, 851, 998
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	724
SmiMI	CAYNNNNRTG	2 cut(s)	195, 283
SmlI	CTYRAG	1 cut(s)	1042
SmoI	CTYRAG	1 cut(s)	1042
Sse9I	AATT	5 cut(s)	311, 316, 336, 607, 612
SsiI	CCGC	3 cut(s)	530, 631, 901
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	3 cut(s)	48, 87, 852
SstI	GAGCTC	1 cut(s)	968
StyD4I	CCNGG	3 cut(s)	42, 732, 742
StyI	CCWWGG	1 cut(s)	977
TaaI	ACNGT	6 cut(s)	32, 250, 769, 826, 929, 944
TaiI	ACGT	2 cut(s)	560, 630
TaqI	TCGA	2 cut(s)	228, 821
TasI	AATT	5 cut(s)	311, 316, 336, 607, 612
TfiI	GAWTC	8 cut(s)	139, 266, 563, 686, 694, 799, 863, 1022
Tru1I	TTAA	2 cut(s)	66, 314
Tru9I	TTAA	2 cut(s)	66, 314
TscAI	CASTG	3 cut(s)	761, 934, 1032
TseFI	GTSAC	1 cut(s)	888
Tsp45I	GTSAC	1 cut(s)	888
TspDTI	ATGAA	7 cut(s)	82, 438, 554, 611, 699, 876, 951
TspGWI	ACGGA	2 cut(s)	604, 830
TspRI	CASTG	3 cut(s)	761, 934, 1032
Van91I	CCANNNNNTGG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	724
XapI	RAATTY	2 cut(s)	316, 607
XceI	RCATGY	2 cut(s)	623, 703
XspI	CTAG	3 cut(s)	48, 87, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.