Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010031

Physical Location & Seq

Genomic Coordinates Reverse (-)

154955 .. 159548

Gene Structure 4594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1002700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCAAGGAGGATCGTCGGGCATCGGATATGGTCTGAAATACCAGGCTAGATGTATATCAGATGTTAAAGCTGACACAGATCATACTAGCTTCATCACTGGCACTCTCAGTCTCAAAGAAGAAAACGAGGTGCATTTGATTCGGCTCTCTTCCGATGGAACCGAACTCGTGTGCGAGGGTTTGTTTTCTCACCCCAACGAGATCTGGGATCTTGCTTCCTGTCCCTTCGACCAACGCATCTTCTCTACTGTTTACTCCACTGGTGAGTCATACGGAGCAGCAATATGGCAGATCCCTGAGCTATACGGTGAATTGAATTCCCCTCAGTTGGAAAGAATTACCTCCCTTGACTCACAAGTTGGCAAGATCAAATGCATTCTTTGGTGGCCATCGGGAAGGCATGATAAGGTGATCAGCATTGATGAAGAAAATCTGTCCTTGTGGAGCTTAGATTTATCCAAAAAAGCTGCTCGGGTACAATCACAGGAGTCAGCTGGTGTGATGCACTACTTGTCTGGTGGTGCATGGGATCCGCATGATATGAATGCTGTTGCAGCGACTTGTGAATCATCCATCCAATTTTGGGATTTACGAACAATGAAGAAGACAAATTCTATCGAGCATGCTCATGTTCGCAATGTTGATTATAATCCCAAGAAGAAACATGTCCTTATAACTGCAGAAGATGAATCTGGTATACGCATATGGGATCTTAGGAAGCCAAAGGTGCCTATCCAGGAGCTTCCAGGACACACACACTGGACATGGGCTGTCCTGTATAACCCTGAGTACGATGGGCTGATTTTGAGTTCTGGCACAGACTCAGCTGTCAACCTGTGGTTTGCTTCTCCACCTAGCGATGATGAGTCTGGGCGCCTGGTTGACTCATCTACAAGGCGGATTGATCCATTGCTCAATTCTTACAGTGATTATGAAGACAGTATTTATGGCCTTGCTTGGAGCTCTCGTGAACCTTGGATCTTCGCATCATTATCCTATGATGGAAGGGTAGTTGTAGAATCAGTGAAGCCATTTCTCTCCAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016567 GO:0019538 GO:0023051 GO:0023057 GO:0031461 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0070647 GO:0071704 GO:0080008 GO:1901419 GO:1901420 GO:1901564 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

350

Amino Acids

39.19

Weight (kDa)

5.17

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EIPR1	PF23609	5 - 280	3.2e-102	EIPR1 beta-propeller
WD40_Prp19	PF24814	83 - 242	3.1e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	107 - 280	3.2e-14	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	146 - 330	5.8e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	180 - 288	4.3e-06	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	184 - 280	7.9e-09	WDR3 first beta-propeller domain
WDR55	PF24796	186 - 273	2.6e-06	WDR55
Beta-prop_WDR5	PF25175	211 - 281	3e-08	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20540 AT1G76260
fragaria_vesca	FvH4_2g37550 FvH4_2g37550 FvH4_2g37550
malus_domestica	MD08G1003000.v1.1 MD15G1002700.v1.1
prunus_persica	Prupe.1G355000_v2.0.a1 Prupe.1G355000_v2.0.a1 Prupe.1G355000_v2.0.a1
pyrus_communis	pycom15g00160
rosa_chinensis	RchiOBHm_Chr6g0304181
rosa_laevigata	RLG00000011008
rosa_multiflora	Rmu_ssc0000218.1_g000010
rosa_roxburghii	Rroxscaffold_7G00163990
rosa_rugosa	Rorug06G0328200 Rorug06G0328300
rosa_samantha	Rh6AG442400 Rh6BG460300 Rh6CG454600
rosa_wichuraiana	Rw6G038350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	648, 674
AasI	GACNNNNNNGTC	1 cut(s)	827
AccB1I	GGYRCC	2 cut(s)	727, 873
AccI	GTMKAC	1 cut(s)	697
AciI	CCGC	2 cut(s)	533, 898
AclWI	GGATC	8 cut(s)	19, 216, 286, 524, 537, 717, 899, 986
AcoI	YGGCCR	1 cut(s)	386
AcsI	RAATTY	2 cut(s)	316, 610
AcyI	GRCGYC	1 cut(s)	874
AfaI	GTAC	2 cut(s)	477, 791
AfiI	CCNNNNNNNGG	2 cut(s)	328, 583
AflIII	ACRYGT	1 cut(s)	664
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	4 cut(s)	42, 735, 745, 876
AluBI	AGCT	9 cut(s)	71, 90, 301, 447, 467, 494, 742, 827, 963
AluI	AGCT	9 cut(s)	71, 90, 301, 447, 467, 494, 742, 827, 963
Alw21I	GWGCWC	1 cut(s)	965
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	8 cut(s)	19, 216, 286, 524, 537, 717, 899, 986
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	2 cut(s)	386, 949
ApeKI	GCWGC	3 cut(s)	278, 467, 554
ApoI	RAATTY	2 cut(s)	316, 610
AspLEI	GCGC	1 cut(s)	876
AsuHPI	GGTGA	4 cut(s)	182, 275, 320, 421
AvaI	CYCGRG	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	388
BamHI	GGATCC	1 cut(s)	529
BanI	GGYRCC	2 cut(s)	727, 873
BanII	GRGCYC	1 cut(s)	965
BauI	CACGAG	2 cut(s)	167, 966
BbsI	GAAGAC	2 cut(s)	611, 942
Bbv12I	GWGCWC	1 cut(s)	965
BbvI	GCAGC	3 cut(s)	290, 454, 566
BccI	CCATC	5 cut(s)	149, 397, 581, 788, 995
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	4 cut(s)	44, 737, 747, 878
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	3 cut(s)	48, 87, 855
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	877
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	3 cut(s)	279, 468, 555
BlsI	GCNGC	3 cut(s)	280, 469, 556
Bme1390I	CCNGG	4 cut(s)	44, 737, 747, 878
BmeT110I	CYCGRG	1 cut(s)	471
BmiI	GGNNCC	4 cut(s)	160, 531, 729, 875
BmrFI	CCNGG	4 cut(s)	44, 737, 747, 878
BmsI	GCATC	4 cut(s)	30, 246, 492, 995
BpiI	GAAGAC	2 cut(s)	611, 942
Bpu10I	CCTNAGC	1 cut(s)	297
BsaBI	GATNNNNATC	2 cut(s)	55, 648
BsaHI	GRCGYC	1 cut(s)	874
BsaJI	CCNNGG	1 cut(s)	974
BsaXI	ACNNNNNCTCC	2 cut(s)	952, 982
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 583
Bse1I	ACTGG	3 cut(s)	103, 265, 764
Bse3DI	GCAATG	2 cut(s)	643, 908
Bse8I	GATNNNNATC	2 cut(s)	55, 648
BseBI	CCWGG	4 cut(s)	44, 737, 747, 878
BseDI	CCNNGG	1 cut(s)	974
BseGI	GGATG	2 cut(s)	569, 573
BseJI	GATNNNNATC	2 cut(s)	55, 648
BseLI	CCNNNNNNNGG	2 cut(s)	328, 583
BseMI	GCAATG	2 cut(s)	643, 908
BseMII	CTCAG	5 cut(s)	121, 288, 338, 777, 837
BseNI	ACTGG	3 cut(s)	103, 265, 764
BseXI	GCAGC	3 cut(s)	290, 454, 566
BshFI	GGCC	2 cut(s)	388, 951
BshNI	GGYRCC	2 cut(s)	727, 873
BsiHKAI	GWGCWC	1 cut(s)	965
BsiHKCI	CYCGRG	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	328, 583
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	207
BsmI	GAATGC	2 cut(s)	375, 550
BsnI	GGCC	2 cut(s)	388, 951
BsoBI	CYCGRG	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	965
BspACI	CCGC	2 cut(s)	533, 898
BspANI	GGCC	2 cut(s)	388, 951
BspCNI	CTCAG	5 cut(s)	120, 289, 337, 778, 836
BspLI	GGNNCC	4 cut(s)	160, 531, 729, 875
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	8 cut(s)	19, 216, 286, 524, 537, 717, 899, 986
BspT107I	GGYRCC	2 cut(s)	727, 873
BsrDI	GCAATG	2 cut(s)	643, 908
BsrI	ACTGG	3 cut(s)	103, 265, 764
BssECI	CCNNGG	1 cut(s)	974
BssNAI	GTATAC	1 cut(s)	698
BssNI	GRCGYC	1 cut(s)	874
BssSI	CACGAG	2 cut(s)	167, 966
BssT1I	CCWWGG	1 cut(s)	974
Bst1107I	GTATAC	1 cut(s)	698
Bst2BI	CACGAG	2 cut(s)	167, 966
Bst2UI	CCWGG	4 cut(s)	44, 737, 747, 878
Bst4CI	ACNGT	4 cut(s)	250, 308, 926, 941
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	874
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	7 cut(s)	107, 297, 324, 448, 713, 786, 823
BstF5I	GGATG	2 cut(s)	569, 573
BstH2I	RGCGCY	1 cut(s)	877
BstHHI	GCGC	1 cut(s)	876
BstMAI	GTCTC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 727
BstNI	CCWGG	4 cut(s)	44, 737, 747, 878
BstNSI	RCATGY	2 cut(s)	626, 668
BstSCI	CCNGG	4 cut(s)	42, 735, 745, 876
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	3 cut(s)	290, 454, 566
BstV2I	GAAGAC	2 cut(s)	611, 942
BstX2I	RGATCY	6 cut(s)	201, 208, 291, 529, 709, 978
BstYI	RGATCY	6 cut(s)	201, 208, 291, 529, 709, 978
BstZ17I	GTATAC	1 cut(s)	698
BsuRI	GGCC	2 cut(s)	388, 951
BtgZI	GCGATG	1 cut(s)	873
BtsCI	GGATG	2 cut(s)	569, 573
BtsIMutI	CAGTG	5 cut(s)	96, 258, 757, 931, 1029
Cac8I	GCNNGC	1 cut(s)	624
CfoI	GCGC	1 cut(s)	876
Csp6I	GTAC	2 cut(s)	476, 790
CviAII	CATG	7 cut(s)	401, 525, 536, 623, 629, 665, 765
CviQI	GTAC	2 cut(s)	476, 790
DdeI	CTNAG	7 cut(s)	107, 297, 324, 448, 713, 786, 823
DinI	GGCGCC	1 cut(s)	875
DrdI	GACNNNNNNGTC	1 cut(s)	827
DseDI	GACNNNNNNGTC	1 cut(s)	827
EaeI	YGGCCR	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	913
Ecl136II	GAGCTC	1 cut(s)	963
Eco130I	CCWWGG	1 cut(s)	974
Eco24I	GRGCYC	1 cut(s)	965
Eco53kI	GAGCTC	1 cut(s)	963
Eco88I	CYCGRG	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	963
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	4 cut(s)	42, 735, 745, 876
EcoT14I	CCWWGG	1 cut(s)	974
EcoT22I	ATGCAT	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	965
EgeI	GGCGCC	1 cut(s)	875
EheI	GGCGCC	1 cut(s)	875
ErhI	CCWWGG	1 cut(s)	974
FaeI	CATG	7 cut(s)	404, 528, 539, 626, 632, 668, 768
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	7 cut(s)	400, 524, 535, 622, 628, 664, 764
FauNDI	CATATG	1 cut(s)	704
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	3 cut(s)	279, 468, 555
FokI	GGATG	2 cut(s)	556, 560
FriOI	GRGCYC	1 cut(s)	965
Fsp4HI	GCNGC	3 cut(s)	279, 468, 555
FspBI	CTAG	3 cut(s)	48, 87, 855
GlaI	GCGC	1 cut(s)	875
GluI	GCNGC	3 cut(s)	279, 468, 555
HaeII	RGCGCY	1 cut(s)	877
HaeIII	GGCC	2 cut(s)	388, 951
HhaI	GCGC	1 cut(s)	876
Hin1I	GRCGYC	1 cut(s)	874
Hin1II	CATG	7 cut(s)	404, 528, 539, 626, 632, 668, 768
Hin6I	GCGC	1 cut(s)	874
HinP1I	GCGC	1 cut(s)	874
HincII	GTYRAC	2 cut(s)	832, 883
HindII	GTYRAC	2 cut(s)	832, 883
HphI	GGTGA	4 cut(s)	182, 275, 320, 421
Hpy166II	GTNNAC	5 cut(s)	253, 698, 832, 883, 971
Hpy188I	TCNGA	4 cut(s)	26, 36, 61, 154
Hpy188III	TCNNGA	2 cut(s)	393, 968
Hpy8I	GTNNAC	5 cut(s)	253, 698, 832, 883, 971
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	235, 390, 999
HpyCH4III	ACNGT	4 cut(s)	250, 308, 926, 941
HpyCH4V	TGCA	7 cut(s)	4, 133, 375, 505, 524, 554, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 727
HpyF3I	CTNAG	7 cut(s)	107, 297, 324, 448, 713, 786, 823
Hsp92I	GRCGYC	1 cut(s)	874
Hsp92II	CATG	7 cut(s)	404, 528, 539, 626, 632, 668, 768
HspAI	GCGC	1 cut(s)	874
KasI	GGCGCC	1 cut(s)	873
Ksp22I	TGATCA	1 cut(s)	411
LmnI	GCTCC	4 cut(s)	275, 444, 739, 960
Lsp1109I	GCAGC	3 cut(s)	290, 454, 566
LweI	GCATC	4 cut(s)	30, 246, 492, 995
MaeI	CTAG	3 cut(s)	48, 87, 855
MflI	RGATCY	6 cut(s)	201, 208, 291, 529, 709, 978
MhlI	GDGCHC	1 cut(s)	965
MlsI	TGGCCA	1 cut(s)	388
MluCI	AATT	6 cut(s)	311, 316, 336, 578, 610, 916
MluNI	TGGCCA	1 cut(s)	388
Mly113I	GGCGCC	1 cut(s)	874
MlyI	GAGTC	6 cut(s)	275, 344, 497, 815, 875, 878
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	4 cut(s)	121, 169, 333, 352
Mox20I	TGGCCA	1 cut(s)	388
Mph1103I	ATGCAT	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	388
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	388
MspA1I	CMGCKG	2 cut(s)	494, 827
MspR9I	CCNGG	4 cut(s)	44, 737, 747, 878
Mva1269I	GAATGC	2 cut(s)	375, 550
MvaI	CCWGG	4 cut(s)	44, 737, 747, 878
MwoI	GCNNNNNNNGC	2 cut(s)	554, 727
NarI	GGCGCC	1 cut(s)	874
NdeI	CATATG	1 cut(s)	704
NlaIII	CATG	7 cut(s)	404, 528, 539, 626, 632, 668, 768
NlaIV	GGNNCC	4 cut(s)	160, 531, 729, 875
NsiI	ATGCAT	1 cut(s)	377
NspI	RCATGY	2 cut(s)	626, 668
PaeI	GCATGC	1 cut(s)	626
PciI	ACATGT	1 cut(s)	664
PctI	GAATGC	2 cut(s)	375, 550
PfeI	GAWTC	4 cut(s)	139, 566, 689, 1019
PfoI	TCCNGGA	2 cut(s)	735, 745
PkrI	GCNGC	3 cut(s)	280, 469, 556
PleI	GAGTC	6 cut(s)	274, 344, 496, 815, 874, 878
PluTI	GGCGCC	1 cut(s)	877
PpsI	GAGTC	6 cut(s)	274, 344, 496, 815, 874, 878
PscI	ACATGT	1 cut(s)	664
PsiI	TTATAA	2 cut(s)	648, 674
Psp124BI	GAGCTC	1 cut(s)	965
Psp6I	CCWGG	4 cut(s)	42, 735, 745, 876
PspGI	CCWGG	4 cut(s)	42, 735, 745, 876
PspN4I	GGNNCC	4 cut(s)	160, 531, 729, 875
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	6 cut(s)	201, 208, 291, 529, 709, 978
PvuII	CAGCTG	2 cut(s)	494, 827
RsaI	GTAC	2 cut(s)	477, 791
RsaNI	GTAC	2 cut(s)	476, 790
RseI	CAYNNNNRTG	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	965
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	3 cut(s)	279, 468, 555
SchI	GAGTC	6 cut(s)	275, 344, 497, 815, 875, 878
ScrFI	CCNGG	4 cut(s)	44, 737, 747, 878
SduI	GDGCHC	1 cut(s)	965
SfaNI	GCATC	4 cut(s)	30, 246, 492, 995
SfcI	CTRYAG	1 cut(s)	678
SfoI	GGCGCC	1 cut(s)	875
SmiMI	CAYNNNNRTG	1 cut(s)	627
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	6 cut(s)	311, 316, 336, 578, 610, 916
SsiI	CCGC	2 cut(s)	533, 898
SspDI	GGCGCC	1 cut(s)	873
SspMI	CTAG	3 cut(s)	48, 87, 855
SstI	GAGCTC	1 cut(s)	965
StyD4I	CCNGG	4 cut(s)	42, 735, 745, 876
StyI	CCWWGG	1 cut(s)	974
TaaI	ACNGT	4 cut(s)	250, 308, 926, 941
TaqI	TCGA	2 cut(s)	228, 618
TasI	AATT	6 cut(s)	311, 316, 336, 578, 610, 916
TfiI	GAWTC	4 cut(s)	139, 566, 689, 1019
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	5 cut(s)	103, 265, 764, 931, 1029
TseI	GCWGC	3 cut(s)	278, 467, 554
TspDTI	ATGAA	6 cut(s)	82, 438, 557, 614, 702, 948
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	5 cut(s)	103, 265, 764, 931, 1029
XapI	RAATTY	2 cut(s)	316, 610
XceI	RCATGY	2 cut(s)	626, 668
XmiI	GTMKAC	1 cut(s)	697
XspI	CTAG	3 cut(s)	48, 87, 855
Zsp2I	ATGCAT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.