Prupe.1G355000_v2.0.a1

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
32954555 .. 32961923
7369 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G355000.1

Sequence Viewer

Length: 1056 bp
ATGCAAGGAGGATCGTCGGGCATCGGATATGGTCTGAAATACCAGGCTAGATGTATATCGGATGTTAAAGCTGACACAGATCATACTAGCTTCATCACCGGCACTCTCAGTCTCAAAGAAGAAAATGAGGTGCATTTGATTCGGCTTTCTTCGGATGGAACCGAACTCGTATGCGAGGGTTTGTTTTCCCACCCCAACGAGATCTGGGACCTTGCTTCCTGTCCATTCGACCAGCGCATCTTCTCTACTGTTTATTCTACAGGTGAGTCATATGGAGCAGCAATATGGCAGATCCCCGAGTTATATGGTGAACTGAATTCCCCTCAGTTGGAAAGAATTACCTCCCTTGACTCACAAGTTGGCAAGATTAAATGCATTCTTTGGTGGCCATCTGGAAGACATGATAAGCTGATCAGCATTGATGAAGAAAATCTGTCCCTGTGGAGCTTAGATTTATCCAAAAAAGCTGCTCAGGTACAATCACAGGAGTCTGCTGGCGTCATGCACTACTTATCTGGTGGTGCATGGGATCCTCATGATATGAATGCTGTTGCAGCAACTTGTGAATCATCCATCCAATTTTGGGATTTGCGGACAATGAAGAAGACAAATTCAGTTGAGCATGCTCATGTCCGCAATGTTGATTATAACCCGAAGAAGAAACACGTGCTTATTACTGCAGAAGATGAATCTGGGATACGCATATGGGATCTTAGGAAGCCAAAGGTCCCTATCCAGGAGCTTCCTGGACACACACACTGGACGTGGGCTGTCAGGTATAACCCTGAGTATGACGGGCTGATTTTGAGTTCTGGTACAGACTCAACTGTCAACCTGTGGTTGGCTTCTCCATCTAGCAATGATGGCTCAATATCTGAAAGCCTGGTTGATTCACCAACTAGGCGGATTGACCCATCGCTGAACTCTTACAGCGACTATGAAGATAGTATTTATGGCCTAGCTTGGAGCTCTCGCGAGCCTTGGATCTTTGCATCATTATCCTATGATGGGAGGGTAGTTGTAGAATCAGTGAAACCATTTCTCTCGAGGAAATAA

Protein Analysis

352

Amino Acids

39.33

Weight (kDa)

5.16

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AasI GACNNNNNNGTC 1 cut(s) 827
AccII CGCG 1 cut(s) 975
AciI CCGC 3 cut(s) 592, 634, 904
AclWI GGATC 6 cut(s) 19, 286, 524, 537, 717, 992
AcoI YGGCCR 1 cut(s) 386
AcsI RAATTY 2 cut(s) 316, 610
AcvI CACGTG 1 cut(s) 667
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 2 cut(s) 477, 817
AfiI CCNNNNNNNGG 5 cut(s) 328, 583, 736, 841, 1008
AflIII ACRYGT 1 cut(s) 664
AjiI CACGTC 1 cut(s) 765
AjnI CCWGG 4 cut(s) 42, 735, 745, 882
AluBI AGCT 8 cut(s) 71, 90, 409, 447, 467, 742, 962, 969
AluI AGCT 8 cut(s) 71, 90, 409, 447, 467, 742, 962, 969
Alw21I GWGCWC 1 cut(s) 971
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 6 cut(s) 19, 286, 524, 537, 717, 992
Ama87I CYCGRG 2 cut(s) 296, 1045
AoxI GGCC 2 cut(s) 386, 955
ApeKI GCWGC 3 cut(s) 278, 467, 554
ApoI RAATTY 2 cut(s) 316, 610
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 208, 727
AsuHPI GGTGA 4 cut(s) 88, 275, 320, 885
AvaI CYCGRG 2 cut(s) 296, 1045
AvaII GGWCC 2 cut(s) 208, 727
BalI TGGCCA 1 cut(s) 388
BamHI GGATCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 971
BbrPI CACGTG 1 cut(s) 667
BbsI GAAGAC 2 cut(s) 403, 611
Bbv12I GWGCWC 1 cut(s) 971
BbvI GCAGC 3 cut(s) 290, 454, 566
BccI CCATC 7 cut(s) 149, 397, 581, 857, 859, 922, 1001
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 4 cut(s) 44, 737, 747, 884
BciVI GTATCC 1 cut(s) 690
BclI TGATCA 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 5 cut(s) 48, 87, 855, 900, 959
BfmI CTRYAG 2 cut(s) 258, 678
BfuI GTATCC 1 cut(s) 690
BglII AGATCT 1 cut(s) 201
BisI GCNGC 3 cut(s) 279, 468, 555
BlsI GCNGC 3 cut(s) 280, 469, 556
Bme1390I CCNGG 4 cut(s) 44, 737, 747, 884
Bme18I GGWCC 2 cut(s) 208, 727
BmeT110I CYCGRG 2 cut(s) 296, 1045
BmgBI CACGTC 1 cut(s) 765
BmgT120I GGNCC 2 cut(s) 208, 727
BmiI GGNNCC 4 cut(s) 160, 209, 531, 729
BmrFI CCNGG 4 cut(s) 44, 737, 747, 884
BmsI GCATC 3 cut(s) 30, 246, 1001
BpiI GAAGAC 2 cut(s) 403, 611
Bpu10I CCTNAGC 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 667
BsaBI GATNNNNATC 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 980
Bsc4I CCNNNNNNNGG 5 cut(s) 328, 583, 736, 841, 1008
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 764
Bse3DI GCAATG 2 cut(s) 643, 865
Bse8I GATNNNNATC 1 cut(s) 55
BseBI CCWGG 4 cut(s) 44, 737, 747, 884
BseDI CCNNGG 1 cut(s) 980
BseGI GGATG 4 cut(s) 67, 160, 569, 573
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 5 cut(s) 328, 583, 736, 841, 1008
BseMI GCAATG 2 cut(s) 643, 865
BseMII CTCAG 4 cut(s) 121, 338, 485, 777
BseNI ACTGG 1 cut(s) 764
BseXI GCAGC 3 cut(s) 290, 454, 566
Bsh1236I CGCG 1 cut(s) 975
BshFI GGCC 2 cut(s) 388, 957
BsiHKAI GWGCWC 1 cut(s) 971
BsiHKCI CYCGRG 2 cut(s) 296, 1045
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 3 cut(s) 221, 421, 713
BslI CCNNNNNNNGG 5 cut(s) 328, 583, 736, 841, 1008
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 3 cut(s) 221, 421, 713
BsmI GAATGC 2 cut(s) 375, 550
BsnI GGCC 2 cut(s) 388, 957
BsoBI CYCGRG 2 cut(s) 296, 1045
Bsp1286I GDGCHC 1 cut(s) 971
Bsp143I GATC 8 cut(s) 11, 79, 201, 291, 411, 529, 709, 984
Bsp68I TCGCGA 1 cut(s) 975
BspACI CCGC 3 cut(s) 592, 634, 904
BspANI GGCC 2 cut(s) 388, 957
BspCNI CTCAG 4 cut(s) 120, 337, 484, 778
BspFNI CGCG 1 cut(s) 975
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 4 cut(s) 160, 209, 531, 729
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 6 cut(s) 19, 286, 524, 537, 717, 992
BsrDI GCAATG 2 cut(s) 643, 865
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 764
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 980
BssMI GATC 8 cut(s) 11, 79, 201, 291, 411, 529, 709, 984
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 980
Bst2UI CCWGG 4 cut(s) 44, 737, 747, 884
Bst4CI ACNGT 2 cut(s) 250, 829
BstACI GRCGYC 1 cut(s) 498
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 3 cut(s) 496, 624, 977
BstDEI CTNAG 6 cut(s) 107, 324, 448, 471, 713, 786
BstF5I GGATG 4 cut(s) 67, 160, 569, 573
BstFNI CGCG 1 cut(s) 975
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 8 cut(s) 14, 82, 204, 294, 414, 532, 712, 987
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 8 cut(s) 11, 79, 201, 291, 411, 529, 709, 984
BstMWI GCNNNNNNNGC 2 cut(s) 554, 864
BstNI CCWGG 4 cut(s) 44, 737, 747, 884
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 4 cut(s) 42, 735, 745, 882
BstSFI CTRYAG 2 cut(s) 258, 678
BstUI CGCG 1 cut(s) 975
BstV1I GCAGC 3 cut(s) 290, 454, 566
BstV2I GAAGAC 2 cut(s) 403, 611
BstX2I RGATCY 5 cut(s) 201, 291, 529, 709, 984
BstYI RGATCY 5 cut(s) 201, 291, 529, 709, 984
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 2 cut(s) 388, 957
BtgZI GCGATG 1 cut(s) 900
BtrI CACGTC 1 cut(s) 765
BtsCI GGATG 4 cut(s) 67, 160, 569, 573
BtsIMutI CAGTG 2 cut(s) 757, 1035
BtuMI TCGCGA 1 cut(s) 975
Cac8I GCNNGC 3 cut(s) 496, 624, 977
CciI TCATGA 1 cut(s) 535
CfoI GCGC 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 208, 727
CseI GACGC 1 cut(s) 487
Csp6I GTAC 2 cut(s) 476, 816
CviAII CATG 6 cut(s) 401, 502, 525, 536, 623, 629
CviQI GTAC 2 cut(s) 476, 816
DdeI CTNAG 6 cut(s) 107, 324, 448, 471, 713, 786
DpnI GATC 8 cut(s) 13, 81, 203, 293, 413, 531, 711, 986
DpnII GATC 8 cut(s) 11, 79, 201, 291, 411, 529, 709, 984
DrdI GACNNNNNNGTC 1 cut(s) 827
DseDI GACNNNNNNGTC 1 cut(s) 827
EaeI YGGCCR 1 cut(s) 386
EciI GGCGGA 1 cut(s) 919
Ecl136II GAGCTC 1 cut(s) 969
Eco130I CCWWGG 1 cut(s) 980
Eco24I GRGCYC 1 cut(s) 971
Eco47I GGWCC 2 cut(s) 208, 727
Eco53kI GAGCTC 1 cut(s) 969
Eco72I CACGTG 1 cut(s) 667
Eco88I CYCGRG 2 cut(s) 296, 1045
EcoICRI GAGCTC 1 cut(s) 969
EcoO109I RGGNCCY 2 cut(s) 208, 727
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 4 cut(s) 42, 735, 745, 882
EcoT14I CCWWGG 1 cut(s) 980
EcoT22I ATGCAT 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 971
ErhI CCWWGG 1 cut(s) 980
FaeI CATG 6 cut(s) 404, 505, 528, 539, 626, 632
FaqI GGGAC 3 cut(s) 221, 421, 713
FatI CATG 6 cut(s) 400, 501, 524, 535, 622, 628
FauNDI CATATG 2 cut(s) 271, 704
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 279, 468, 555
FokI GGATG 4 cut(s) 74, 167, 556, 560
FriOI GRGCYC 1 cut(s) 971
Fsp4HI GCNGC 3 cut(s) 279, 468, 555
FspBI CTAG 5 cut(s) 48, 87, 855, 900, 959
GlaI GCGC 1 cut(s) 236
GluI GCNGC 3 cut(s) 279, 468, 555
HaeIII GGCC 2 cut(s) 388, 957
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 487
HhaI GCGC 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 6 cut(s) 404, 505, 528, 539, 626, 632
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HinfI GANTC 9 cut(s) 139, 266, 350, 488, 566, 689, 821, 890, 1025
HpaII CCGG 1 cut(s) 99
HphI GGTGA 4 cut(s) 88, 275, 320, 885
Hpy166II GTNNAC 2 cut(s) 311, 832
Hpy188I TCNGA 5 cut(s) 26, 36, 61, 154, 877
Hpy188III TCNNGA 4 cut(s) 393, 536, 974, 1045
Hpy8I GTNNAC 2 cut(s) 311, 832
Hpy99I CGWCG 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 250, 829
HpyCH4IV ACGT 2 cut(s) 666, 764
HpyCH4V TGCA 8 cut(s) 4, 133, 375, 505, 524, 554, 680, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 864
HpyF3I CTNAG 6 cut(s) 107, 324, 448, 471, 713, 786
HpySE526I ACGT 2 cut(s) 666, 764
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 6 cut(s) 404, 505, 528, 539, 626, 632
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 8 cut(s) 11, 79, 201, 291, 411, 529, 709, 984
LmnI GCTCC 4 cut(s) 275, 444, 739, 966
Lsp1109I GCAGC 3 cut(s) 290, 454, 566
LweI GCATC 3 cut(s) 30, 246, 1001
MaeI CTAG 5 cut(s) 48, 87, 855, 900, 959
MaeII ACGT 2 cut(s) 666, 764
MalI GATC 8 cut(s) 13, 81, 203, 293, 413, 531, 711, 986
MboI GATC 8 cut(s) 11, 79, 201, 291, 411, 529, 709, 984
MflI RGATCY 5 cut(s) 201, 291, 529, 709, 984
MhlI GDGCHC 1 cut(s) 971
MlsI TGGCCA 1 cut(s) 388
MluCI AATT 4 cut(s) 316, 336, 578, 610
MluNI TGGCCA 1 cut(s) 388
MlyI GAGTC 4 cut(s) 275, 344, 497, 815
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 7 cut(s) 121, 169, 333, 352, 543, 1005, 1041
Mox20I TGGCCA 1 cut(s) 388
Mph1103I ATGCAT 1 cut(s) 377
MscI TGGCCA 1 cut(s) 388
MseI TTAA 2 cut(s) 66, 369
MslI CAYNNNNRTG 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 388
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 4 cut(s) 44, 737, 747, 884
Mva1269I GAATGC 2 cut(s) 375, 550
MvaI CCWGG 4 cut(s) 44, 737, 747, 884
MvnI CGCG 1 cut(s) 975
MwoI GCNNNNNNNGC 2 cut(s) 554, 864
NdeI CATATG 2 cut(s) 271, 704
NdeII GATC 8 cut(s) 11, 79, 201, 291, 411, 529, 709, 984
NlaIII CATG 6 cut(s) 404, 505, 528, 539, 626, 632
NlaIV GGNNCC 4 cut(s) 160, 209, 531, 729
NruI TCGCGA 1 cut(s) 975
NsiI ATGCAT 1 cut(s) 377
NspI RCATGY 1 cut(s) 626
PaeI GCATGC 1 cut(s) 626
PaeR7I CTCGAG 1 cut(s) 1045
PagI TCATGA 1 cut(s) 535
PctI GAATGC 2 cut(s) 375, 550
PfeI GAWTC 5 cut(s) 139, 566, 689, 890, 1025
PfoI TCCNGGA 2 cut(s) 735, 745
PkrI GCNGC 3 cut(s) 280, 469, 556
PleI GAGTC 4 cut(s) 274, 344, 496, 815
PmaCI CACGTG 1 cut(s) 667
PmlI CACGTG 1 cut(s) 667
PpsI GAGTC 4 cut(s) 274, 344, 496, 815
Ppu21I YACGTR 1 cut(s) 667
PpuMI RGGWCCY 2 cut(s) 208, 727
PsiI TTATAA 1 cut(s) 648
Psp124BI GAGCTC 1 cut(s) 971
Psp5II RGGWCCY 2 cut(s) 208, 727
Psp6I CCWGG 4 cut(s) 42, 735, 745, 882
PspCI CACGTG 1 cut(s) 667
PspGI CCWGG 4 cut(s) 42, 735, 745, 882
PspN4I GGNNCC 4 cut(s) 160, 209, 531, 729
PspPI GGNCC 2 cut(s) 208, 727
PspPPI RGGWCCY 2 cut(s) 208, 727
PstI CTGCAG 1 cut(s) 682
PsuI RGATCY 5 cut(s) 201, 291, 529, 709, 984
RruI TCGCGA 1 cut(s) 975
RsaI GTAC 2 cut(s) 477, 817
RsaNI GTAC 2 cut(s) 476, 816
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 971
SaqAI TTAA 2 cut(s) 66, 369
SatI GCNGC 3 cut(s) 279, 468, 555
Sau3AI GATC 8 cut(s) 11, 79, 201, 291, 411, 529, 709, 984
Sau96I GGNCC 2 cut(s) 208, 727
SchI GAGTC 4 cut(s) 275, 344, 497, 815
ScrFI CCNGG 4 cut(s) 44, 737, 747, 884
SduI GDGCHC 1 cut(s) 971
SfaNI GCATC 3 cut(s) 30, 246, 1001
SfcI CTRYAG 2 cut(s) 258, 678
Sfr274I CTCGAG 1 cut(s) 1045
SinI GGWCC 2 cut(s) 208, 727
SlaI CTCGAG 1 cut(s) 1045
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 1045
SmoI CTYRAG 1 cut(s) 1045
SphI GCATGC 1 cut(s) 626
Sse9I AATT 4 cut(s) 316, 336, 578, 610
SsiI CCGC 3 cut(s) 592, 634, 904
SspMI CTAG 5 cut(s) 48, 87, 855, 900, 959
SstI GAGCTC 1 cut(s) 971
StyD4I CCNGG 4 cut(s) 42, 735, 745, 882
StyI CCWWGG 1 cut(s) 980
TaaI ACNGT 2 cut(s) 250, 829
TaiI ACGT 2 cut(s) 669, 767
TaqI TCGA 2 cut(s) 228, 1046
TasI AATT 4 cut(s) 316, 336, 578, 610
TfiI GAWTC 5 cut(s) 139, 566, 689, 890, 1025
Tru1I TTAA 2 cut(s) 66, 369
Tru9I TTAA 2 cut(s) 66, 369
TscAI CASTG 2 cut(s) 764, 1035
TseI GCWGC 3 cut(s) 278, 467, 554
TspDTI ATGAA 6 cut(s) 82, 438, 557, 614, 702, 954
TspRI CASTG 2 cut(s) 764, 1035
VpaK11BI GGWCC 2 cut(s) 208, 727
XapI RAATTY 2 cut(s) 316, 610
XceI RCATGY 1 cut(s) 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XhoI CTCGAG 1 cut(s) 1045
XspI CTAG 5 cut(s) 48, 87, 855, 900, 959
Zsp2I ATGCAT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.