Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015290

Physical Location & Seq

Genomic Coordinates Forward (+)

28728206 .. 28728976

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATCTCGGGCTCGGCGACGGCGAGTCATGGGAGAGTGTTGCTTCCGTCACAAAGGGAGCGACGGCCCGTCTCAACTGGATCAAATATTTTACGTTTCAGAGAAACAGTACCGAGACAATTCAGCCTGATGATGGTGACGAAGGCGACGGCAAAGTATATGGGGACGAAGATGAGGGAGGAGAAACTATCGGAGATGATAGAGGAGAAAGTGAAGGAAGCGACAGAGGTTTGCGAGGCGGAAGAGATGTCGGAGGAGTGTAGAGTTGCGTGGGACGAAGTTGAAGAAGTGAGTCAAGCCAGAGCAGATCTGAGGATCAAGCTGAAGTTACTGAATCAGGATCCGCTCGAGAGTTTCTGCCAGGAGAATCCAGAGACCGACGAGTGTCGAATCTACGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010109 GO:0010110 GO:0016151 GO:0019222 GO:0031323 GO:0031324 GO:0032991 GO:0033554 GO:0034059 GO:0034605 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044424 GO:0044444 GO:0044464 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0080090 GO:0080152 GO:0080153 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

134

Amino Acids

15.45

Weight (kDa)

4.95

Isoelectric Point (pI)

64.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	63 - 133	2.6e-23	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76560
fragaria_vesca	FvH4_5g26470
malus_domestica	MD06G1001800.v1.1
prunus_persica	Prupe.5G002800_v2.0.a1
pyrus_communis	pycom06g00190
rosa_chinensis	RchiOBHm_Chr7g0217381
rosa_laevigata	RLG00000002483
rosa_multiflora	Rmu_sc0014260.1_g000001 Rmu_sc0024636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242270
rosa_rugosa	Rorug07G0168600
rosa_samantha	Rh7AG308300 Rh7BG299000 Rh7CG327600 Rh7DG307500
rosa_wichuraiana	Rw7G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	346
AciI	CCGC	2 cut(s)	239, 344
AclWI	GGATC	4 cut(s)	88, 323, 335, 348
AcuI	CTGAAG	1 cut(s)	344
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	284
AhdI	GACNNNNNGTC	2 cut(s)	24, 68
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Alw26I	GTCTC	3 cut(s)	76, 109, 368
AlwI	GGATC	4 cut(s)	88, 323, 335, 348
Ama87I	CYCGRG	2 cut(s)	7, 347
AoxI	GGCC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	2 cut(s)	7, 347
BamHI	GGATCC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	14
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	3 cut(s)	36, 80, 165
BciT130I	CCWGG	1 cut(s)	362
BcoDI	GTCTC	3 cut(s)	76, 109, 368
BglII	AGATCT	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	362
BmeRI	GACNNNNNGTC	2 cut(s)	24, 68
BmeT110I	CYCGRG	2 cut(s)	7, 347
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	362
BoxI	GACNNNNGTC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	3 cut(s)	194, 218, 269
BshFI	GGCC	1 cut(s)	67
BsiHKCI	CYCGRG	2 cut(s)	7, 347
BslFI	GGGAC	2 cut(s)	178, 287
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	76, 109, 368
BsmBI	CGTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	178, 287
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	368
BsoBI	CYCGRG	2 cut(s)	7, 347
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	5 cut(s)	3, 80, 307, 315, 340
BspACI	CCGC	2 cut(s)	239, 344
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	4 cut(s)	88, 323, 335, 348
BspTNI	GGTCTC	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	82
BssMI	GATC	5 cut(s)	3, 80, 307, 315, 340
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	311
BstKTI	GATC	5 cut(s)	6, 83, 310, 318, 343
BstMAI	GTCTC	3 cut(s)	76, 109, 368
BstMBI	GATC	5 cut(s)	3, 80, 307, 315, 340
BstNI	CCWGG	1 cut(s)	362
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	360
BstX2I	RGATCY	2 cut(s)	307, 340
BstYI	RGATCY	2 cut(s)	307, 340
BsuRI	GGCC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	5 cut(s)	12, 67, 126, 299, 322
CviKI_1	RGCY	5 cut(s)	12, 67, 126, 299, 322
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	5 cut(s)	5, 82, 309, 317, 342
DpnII	GATC	5 cut(s)	3, 80, 307, 315, 340
DriI	GACNNNNNGTC	2 cut(s)	24, 68
Eam1104I	CTCTTC	1 cut(s)	237
Eam1105I	GACNNNNNGTC	2 cut(s)	24, 68
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	2 cut(s)	7, 347
EcoRII	CCWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	76
FaeI	CATG	1 cut(s)	32
FaiI	YATR	3 cut(s)	30, 159, 161
FaqI	GGGAC	2 cut(s)	178, 287
FatI	CATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	5 cut(s)	25, 292, 334, 367, 390
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	4 cut(s)	101, 193, 253, 312
Hpy188III	TCNNGA	3 cut(s)	338, 349, 371
Hpy99I	CGWCG	4 cut(s)	22, 66, 151, 383
HpyAV	CCTTC	2 cut(s)	136, 208
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	5 cut(s)	3, 80, 307, 315, 340
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	7 cut(s)	63, 140, 313, 323, 347, 374, 384
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	3 cut(s)	48, 136, 327
MalI	GATC	5 cut(s)	5, 82, 309, 317, 342
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	5 cut(s)	3, 80, 307, 315, 340
MboII	GAAGA	3 cut(s)	181, 254, 296
MflI	RGATCY	2 cut(s)	307, 340
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	2 cut(s)	34, 301
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	7 cut(s)	168, 172, 196, 220, 229, 247, 306
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
NdeII	GATC	5 cut(s)	3, 80, 307, 315, 340
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	2 cut(s)	48, 136
PaeR7I	CTCGAG	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 20
PfeI	GAWTC	3 cut(s)	334, 367, 390
PleI	GAGTC	2 cut(s)	33, 300
PpsI	GAGTC	2 cut(s)	33, 300
PshAI	GACNNNNGTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	307, 340
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
Sau3AI	GATC	5 cut(s)	3, 80, 307, 315, 340
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	34, 301
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	3 cut(s)	97, 231, 324
Sfr274I	CTCGAG	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	239, 344
SspI	AATATT	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	348, 388
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	334, 367, 390
TseFI	GTSAC	2 cut(s)	48, 136
Tsp45I	GTSAC	2 cut(s)	48, 136
TspGWI	ACGGA	1 cut(s)	36
XhoI	CTCGAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.