Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015290

Physical Location & Seq

Genomic Coordinates Reverse (-)

34673238 .. 34674340

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGTGCCTATCATCCCCATCTCTTTCGACTCTGCGTTTCCCCAACGATCTAACGTCGGCGGCGCAGGTGTCCTTTGCGAGATCGGGCCTGGTGGTCCGGGTTACGAACCCGGGTGGGCAGAGGAAGGCGATGAGAGTGATGGCGGTGGCCAAGTTCAAGGGGACGCAGATGAGGGAGAAGCGGCTGGCGGAGATGATCGAGAAGAAGGTTCTGGAAGCCAAGCAGGTGTGCGGCGAGGGAGATCCGATCACGGACGAGTGCAAGGTGGCGTGGGACGAGGTGGAGGAGGTGAGTCAAGCCAAGGCTGATCTCAGGCTCAGAATGAAGGACAGTGATCCTCTTGAGTCGTTTTGCCAAGATAATCCTGAGACGGACGAGTGCCGAATCTACGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010109 GO:0010110 GO:0016151 GO:0019222 GO:0031323 GO:0031324 GO:0032991 GO:0033554 GO:0034059 GO:0034605 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044424 GO:0044444 GO:0044464 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0080090 GO:0080152 GO:0080153 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

133

Amino Acids

14.86

Weight (kDa)

5.16

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	63 - 132	1.5e-23	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76560
fragaria_vesca	FvH4_5g26470
malus_domestica	MD06G1001800.v1.1
prunus_persica	Prupe.5G002800_v2.0.a1
pyrus_communis	pycom06g00190
rosa_chinensis	RchiOBHm_Chr7g0217381
rosa_laevigata	RLG00000002483
rosa_multiflora	Rmu_sc0014260.1_g000001 Rmu_sc0024636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242270
rosa_rugosa	Rorug07G0168600
rosa_samantha	Rh7AG308300 Rh7BG299000 Rh7CG327600 Rh7DG307500
rosa_wichuraiana	Rw7G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	58, 217
Acc36I	ACCTGC	2 cut(s)	58, 217
AciI	CCGC	5 cut(s)	62, 146, 184, 191, 234
AclWI	GGATC	2 cut(s)	239, 332
AcoI	YGGCCR	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	239, 332
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	88, 150
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	88, 97
AsuC2I	CCSGG	3 cut(s)	101, 113, 114
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	152
BccI	CCATC	2 cut(s)	28, 136
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	3 cut(s)	101, 113, 114
BcoDI	GTCTC	1 cut(s)	365
BfuAI	ACCTGC	2 cut(s)	58, 217
BisI	GCNGC	3 cut(s)	63, 185, 235
BlsI	GCNGC	3 cut(s)	64, 186, 236
Bme1390I	CCNGG	4 cut(s)	92, 101, 113, 114
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	88, 97
BmrFI	CCNGG	4 cut(s)	92, 101, 113, 114
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	3 cut(s)	101, 113, 114
BsaJI	CCNNGG	2 cut(s)	112, 303
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	112, 303
BseGI	GGATG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	328, 334, 360
BseRI	GAGGAG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	90, 152
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	100, 113
BslFI	GGGAC	2 cut(s)	178, 290
BsmAI	GTCTC	1 cut(s)	365
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	2 cut(s)	178, 290
BsnI	GGCC	2 cut(s)	90, 152
BsoBI	CYCGRG	1 cut(s)	112
Bsp143I	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
BspACI	CCGC	5 cut(s)	62, 146, 184, 191, 234
BspANI	GGCC	2 cut(s)	90, 152
BspCNI	CTCAG	3 cut(s)	327, 333, 361
BspMI	ACCTGC	2 cut(s)	58, 217
BspPI	GGATC	2 cut(s)	239, 332
BssECI	CCNNGG	2 cut(s)	112, 303
BssMI	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	7, 189
BstDEI	CTNAG	3 cut(s)	314, 320, 369
BstF5I	GGATG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	7 cut(s)	52, 86, 201, 247, 252, 313, 340
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	4 cut(s)	90, 99, 111, 112
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	90, 152
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	2 cut(s)	58, 217
Cac8I	GCNNGC	2 cut(s)	7, 189
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	88, 97
Cfr9I	CCCGGG	1 cut(s)	112
CseI	GACGC	1 cut(s)	175
CviJI	RGCY	7 cut(s)	90, 152, 187, 221, 302, 308, 319
CviKI_1	RGCY	7 cut(s)	90, 152, 187, 221, 302, 308, 319
DdeI	CTNAG	3 cut(s)	314, 320, 369
DpnI	GATC	7 cut(s)	51, 85, 200, 246, 251, 312, 339
DpnII	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
EaeI	YGGCCR	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	365
FaqI	GGGAC	2 cut(s)	178, 290
Fnu4HI	GCNGC	3 cut(s)	63, 185, 235
Fsp4HI	GCNGC	3 cut(s)	63, 185, 235
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	3 cut(s)	63, 185, 235
HaeIII	GGCC	2 cut(s)	90, 152
HapII	CCGG	2 cut(s)	100, 113
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	4 cut(s)	31, 295, 347, 387
HpaII	CCGG	2 cut(s)	100, 113
HphI	GGTGA	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	249, 323
Hpy188III	TCNNGA	4 cut(s)	202, 215, 344, 368
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	121, 202, 322
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	264
HpyF3I	CTNAG	3 cut(s)	314, 320, 369
HpySE526I	ACGT	1 cut(s)	56
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	7 cut(s)	51, 85, 200, 246, 251, 312, 339
MboI	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	152
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	3 cut(s)	25, 304, 356
MnlI	CCTC	8 cut(s)	117, 168, 232, 274, 280, 283, 351, 388
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	2 cut(s)	100, 113
MspR9I	CCNGG	4 cut(s)	92, 101, 113, 114
MvaI	CCWGG	1 cut(s)	92
NciI	CCSGG	3 cut(s)	101, 113, 114
NdeII	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
PaqCI	CACCTGC	2 cut(s)	58, 217
PfeI	GAWTC	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	64, 186, 236
PleI	GAGTC	3 cut(s)	25, 303, 355
PpsI	GAGTC	3 cut(s)	25, 303, 355
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	2 cut(s)	88, 97
PsuI	RGATCY	1 cut(s)	244
SatI	GCNGC	3 cut(s)	63, 185, 235
Sau3AI	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
Sau96I	GGNCC	2 cut(s)	88, 97
SchI	GAGTC	3 cut(s)	25, 304, 356
ScrFI	CCNGG	4 cut(s)	92, 101, 113, 114
SetI	ASST	7 cut(s)	59, 72, 213, 231, 270, 285, 294
SinI	GGWCC	1 cut(s)	97
SmaI	CCCGGG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SsiI	CCGC	5 cut(s)	62, 146, 184, 191, 234
StyD4I	CCNGG	4 cut(s)	90, 99, 111, 112
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	29, 201
TauI	GCSGC	3 cut(s)	65, 187, 237
TfiI	GAWTC	1 cut(s)	387
TscAI	CASTG	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	2 cut(s)	269, 389
TspMI	CCCGGG	1 cut(s)	112
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	97
XmaI	CCCGGG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.