Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0015290

Physical Location & Seq

Genomic Coordinates Forward (+)

33103223 .. 33103623

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCGTGCTTATCATCTCCATCACTTTCGACCCTGCGCTTCTCTAACGATCTAACGTCGGCGGCGCCGGTGTCCTTTGCGAGATCGGCCTGGCGGAAGGCGATGAGAGTGATGGCGGTGGCCAAGTTCAAGGGGACGCAGATGAGGGAGCAGCGGCTGACGGAGATGATCGAGAAGAAGGTTCTGGAAGCCAAGCAGGTGTGCGGCGAGGGAGATCCGATCACGGACGAGTGCAAGGTGGCGTGGGACGAGGTGGAGGAGGTGAGTCAAGCCAAGGCCGATCTCAGGCTCAAAATGAAGGACAGTGATCCTCTCGAGTCGTTTTGCCAGGACAATCCTGAGACGGACGAGTGTCGAATCTACGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010109 GO:0010110 GO:0016151 GO:0019222 GO:0031323 GO:0031324 GO:0032991 GO:0033554 GO:0034059 GO:0034605 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044424 GO:0044444 GO:0044464 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0080090 GO:0080152 GO:0080153 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

123

Amino Acids

13.9

Weight (kDa)

4.89

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	53 - 122	4.7e-24	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76560
fragaria_vesca	FvH4_5g26470
malus_domestica	MD06G1001800.v1.1
prunus_persica	Prupe.5G002800_v2.0.a1
pyrus_communis	pycom06g00190
rosa_chinensis	RchiOBHm_Chr7g0217381
rosa_laevigata	RLG00000002483
rosa_multiflora	Rmu_sc0014260.1_g000001 Rmu_sc0024636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242270
rosa_rugosa	Rorug07G0168600
rosa_samantha	Rh7AG308300 Rh7BG299000 Rh7CG327600 Rh7DG307500
rosa_wichuraiana	Rw7G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccB1I	GGYRCC	1 cut(s)	64
AciI	CCGC	5 cut(s)	62, 94, 116, 154, 204
AclWI	GGATC	2 cut(s)	209, 302
AcoI	YGGCCR	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	89, 327
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	209, 302
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	3 cut(s)	87, 120, 276
ApeKI	GCWGC	1 cut(s)	151
AspLEI	GCGC	2 cut(s)	39, 67
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	28, 106
BciT130I	CCWGG	2 cut(s)	91, 329
BcoDI	GTCTC	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	4 cut(s)	63, 152, 155, 205
BlsI	GCNGC	4 cut(s)	64, 153, 156, 206
Bme1390I	CCNGG	2 cut(s)	91, 329
BmeT110I	CYCGRG	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	91, 329
BoxI	GACNNNNGTC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	91, 329
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	298, 330
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	3 cut(s)	89, 122, 278
BshNI	GGYRCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	148, 260
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	335
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	148, 260
BsnI	GGCC	3 cut(s)	89, 122, 278
BsoBI	CYCGRG	1 cut(s)	314
Bsp143I	GATC	7 cut(s)	49, 83, 168, 214, 219, 280, 307
BspACI	CCGC	5 cut(s)	62, 94, 116, 154, 204
BspANI	GGCC	3 cut(s)	89, 122, 278
BspCNI	CTCAG	2 cut(s)	297, 331
BspLI	GGNNCC	1 cut(s)	66
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	2 cut(s)	209, 302
BspT107I	GGYRCC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	7 cut(s)	49, 83, 168, 214, 219, 280, 307
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	91, 329
Bst4CI	ACNGT	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	284, 339
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	2 cut(s)	39, 67
BstKTI	GATC	7 cut(s)	52, 86, 171, 217, 222, 283, 310
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	7 cut(s)	49, 83, 168, 214, 219, 280, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	91, 329
BstPAI	GACNNNNGTC	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	89, 327
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	3 cut(s)	89, 122, 278
BtgZI	GCGATG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	2 cut(s)	39, 67
Cfr10I	RCCGGY	1 cut(s)	67
CseI	GACGC	1 cut(s)	145
CviJI	RGCY	7 cut(s)	89, 122, 157, 191, 272, 278, 289
CviKI_1	RGCY	7 cut(s)	89, 122, 157, 191, 272, 278, 289
DdeI	CTNAG	2 cut(s)	284, 339
DinI	GGCGCC	1 cut(s)	66
DpnI	GATC	7 cut(s)	51, 85, 170, 216, 221, 282, 309
DpnII	GATC	7 cut(s)	49, 83, 168, 214, 219, 280, 307
EaeI	YGGCCR	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	89, 327
EcoT14I	CCWWGG	1 cut(s)	273
EgeI	GGCGCC	1 cut(s)	66
EheI	GGCGCC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	335
FaqI	GGGAC	2 cut(s)	148, 260
Fnu4HI	GCNGC	4 cut(s)	63, 152, 155, 205
Fsp4HI	GCNGC	4 cut(s)	63, 152, 155, 205
GlaI	GCGC	2 cut(s)	38, 66
GluI	GCNGC	4 cut(s)	63, 152, 155, 205
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	89, 122, 278
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	2 cut(s)	39, 67
Hin1I	GRCGYC	1 cut(s)	65
Hin6I	GCGC	2 cut(s)	37, 65
HinP1I	GCGC	2 cut(s)	37, 65
HinfI	GANTC	3 cut(s)	265, 317, 357
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	4 cut(s)	172, 185, 314, 338
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	91, 172, 292
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	284, 339
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	65
HspAI	GCGC	2 cut(s)	37, 65
KasI	GGCGCC	1 cut(s)	64
Kzo9I	GATC	7 cut(s)	49, 83, 168, 214, 219, 280, 307
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	1 cut(s)	163
MaeII	ACGT	1 cut(s)	56
MalI	GATC	7 cut(s)	51, 85, 170, 216, 221, 282, 309
MboI	GATC	7 cut(s)	49, 83, 168, 214, 219, 280, 307
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	122
MluNI	TGGCCA	1 cut(s)	122
Mly113I	GGCGCC	1 cut(s)	65
MlyI	GAGTC	2 cut(s)	274, 326
MnlI	CCTC	7 cut(s)	138, 202, 244, 250, 253, 321, 358
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	91, 329
MvaI	CCWGG	2 cut(s)	91, 329
MwoI	GCNNNNNNNGC	1 cut(s)	86
NarI	GGCGCC	1 cut(s)	65
NdeII	GATC	7 cut(s)	49, 83, 168, 214, 219, 280, 307
NlaIV	GGNNCC	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	64, 153, 156, 206
PleI	GAGTC	2 cut(s)	273, 325
PluTI	GGCGCC	1 cut(s)	68
PpsI	GAGTC	2 cut(s)	273, 325
PshAI	GACNNNNGTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	89, 327
PspGI	CCWGG	2 cut(s)	89, 327
PspN4I	GGNNCC	1 cut(s)	66
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	214
SatI	GCNGC	4 cut(s)	63, 152, 155, 205
Sau3AI	GATC	7 cut(s)	49, 83, 168, 214, 219, 280, 307
SchI	GAGTC	2 cut(s)	274, 326
ScrFI	CCNGG	2 cut(s)	91, 329
SetI	ASST	6 cut(s)	59, 183, 201, 240, 255, 264
SfoI	GGCGCC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	314
SgrAI	CRCCGGYG	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SsiI	CCGC	5 cut(s)	62, 94, 116, 154, 204
SspDI	GGCGCC	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	89, 327
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	4 cut(s)	29, 171, 315, 355
TauI	GCSGC	3 cut(s)	65, 157, 207
TfiI	GAWTC	1 cut(s)	357
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	3 cut(s)	176, 239, 359
TspRI	CASTG	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.