Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015290

Physical Location & Seq

Genomic Coordinates Forward (+)

35875911 .. 35877050

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG307500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGTGCTTATCATCTCCATCACTTTCGACCCTGCGCTTCTCTAACGATCTAACGTCGGCGGCGCCGGTGTCCTTTGCGAGATCGGGCCTGGCGGTTCGAGGTACGAATCCGGGTGGGCAGAGGAAGGCGATGAGAGTGATGGCGGTGGCCAAGTTCAAGGGGACGCAGATGAGGGAGAAGCGGCTGACGGAGATGATCGAGAAGAAGGTTCTGGAAGCCAAGCAGGTGTGCGGCGAGGGAGATCTGATCACGGACGAGTGCAAGGTGGCGTGGGATGAGGTGGAGGAGGTGAGTCAAGCCAAGGCCGATCTCAGGCTCAAAATGAAGGACAGTGATCCTCTCGAGTCGTTTTGCCAGGACAATCCTGAGACGGACGAGTGTCGAATCTACGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010109 GO:0010110 GO:0016151 GO:0019222 GO:0031323 GO:0031324 GO:0032991 GO:0033554 GO:0034059 GO:0034605 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044424 GO:0044444 GO:0044464 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0080090 GO:0080152 GO:0080153 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

133

Amino Acids

14.77

Weight (kDa)

5.16

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	63 - 132	1.4e-23	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76560
fragaria_vesca	FvH4_5g26470
malus_domestica	MD06G1001800.v1.1
prunus_persica	Prupe.5G002800_v2.0.a1
pyrus_communis	pycom06g00190
rosa_chinensis	RchiOBHm_Chr7g0217381
rosa_laevigata	RLG00000002483
rosa_multiflora	Rmu_sc0014260.1_g000001 Rmu_sc0024636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242270
rosa_rugosa	Rorug07G0168600
rosa_samantha	Rh7AG308300 Rh7BG299000 Rh7CG327600 Rh7DG307500
rosa_wichuraiana	Rw7G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AccB1I	GGYRCC	1 cut(s)	64
AciI	CCGC	5 cut(s)	62, 95, 146, 184, 234
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	90, 357
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	3 cut(s)	88, 150, 306
AspLEI	GCGC	2 cut(s)	39, 67
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	64
BccI	CCATC	2 cut(s)	28, 136
BciT130I	CCWGG	2 cut(s)	92, 359
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	365
BfoI	RGCGCY	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	3 cut(s)	63, 185, 235
BlsI	GCNGC	3 cut(s)	64, 186, 236
Bme1390I	CCNGG	3 cut(s)	92, 114, 359
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	3 cut(s)	92, 114, 359
BoxI	GACNNNNGTC	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	92, 359
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	328, 360
BseRI	GAGGAG	1 cut(s)	302
BshFI	GGCC	3 cut(s)	90, 152, 308
BshNI	GGYRCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	68, 113
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	365
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	90, 152, 308
BsoBI	CYCGRG	1 cut(s)	344
Bsp143I	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
BspACI	CCGC	5 cut(s)	62, 95, 146, 184, 234
BspANI	GGCC	3 cut(s)	90, 152, 308
BspCNI	CTCAG	2 cut(s)	327, 361
BspLI	GGNNCC	1 cut(s)	66
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	2 cut(s)	92, 359
Bst4CI	ACNGT	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	314, 369
BstF5I	GGATG	1 cut(s)	283
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	2 cut(s)	39, 67
BstKTI	GATC	7 cut(s)	52, 86, 201, 247, 252, 313, 340
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
BstNI	CCWGG	2 cut(s)	92, 359
BstPAI	GACNNNNGTC	1 cut(s)	381
BstSCI	CCNGG	3 cut(s)	90, 112, 357
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	90, 152, 308
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	39, 67
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	88
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	105
CviJI	RGCY	7 cut(s)	90, 152, 187, 221, 302, 308, 319
CviKI_1	RGCY	7 cut(s)	90, 152, 187, 221, 302, 308, 319
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	2 cut(s)	314, 369
DinI	GGCGCC	1 cut(s)	66
DpnI	GATC	7 cut(s)	51, 85, 200, 246, 251, 312, 339
DpnII	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
EaeI	YGGCCR	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	90, 357
EcoT14I	CCWWGG	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	66
EheI	GGCGCC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	365
FaqI	GGGAC	1 cut(s)	178
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	3 cut(s)	63, 185, 235
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	63, 185, 235
GlaI	GCGC	2 cut(s)	38, 66
GluI	GCNGC	3 cut(s)	63, 185, 235
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	90, 152, 308
HapII	CCGG	2 cut(s)	68, 113
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	39, 67
Hin1I	GRCGYC	1 cut(s)	65
Hin6I	GCGC	2 cut(s)	37, 65
HinP1I	GCGC	2 cut(s)	37, 65
HinfI	GANTC	4 cut(s)	109, 295, 347, 387
HpaII	CCGG	2 cut(s)	68, 113
HphI	GGTGA	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	4 cut(s)	202, 215, 344, 368
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	121, 202, 322
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	314, 369
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	65
HspAI	GCGC	2 cut(s)	37, 65
KasI	GGCGCC	1 cut(s)	64
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
MaeII	ACGT	1 cut(s)	56
MalI	GATC	7 cut(s)	51, 85, 200, 246, 251, 312, 339
MboI	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	152
MluNI	TGGCCA	1 cut(s)	152
Mly113I	GGCGCC	1 cut(s)	65
MlyI	GAGTC	2 cut(s)	304, 356
MnlI	CCTC	9 cut(s)	95, 117, 168, 232, 274, 280, 283, 351, 388
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	2 cut(s)	68, 113
MspR9I	CCNGG	3 cut(s)	92, 114, 359
MvaI	CCWGG	2 cut(s)	92, 359
NarI	GGCGCC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
NlaIV	GGNNCC	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	344
PaqCI	CACCTGC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	109, 387
PkrI	GCNGC	3 cut(s)	64, 186, 236
PleI	GAGTC	2 cut(s)	303, 355
PluTI	GGCGCC	1 cut(s)	68
PpsI	GAGTC	2 cut(s)	303, 355
PshAI	GACNNNNGTC	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	90, 357
PspGI	CCWGG	2 cut(s)	90, 357
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SatI	GCNGC	3 cut(s)	63, 185, 235
Sau3AI	GATC	7 cut(s)	49, 83, 198, 244, 249, 310, 337
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	2 cut(s)	304, 356
ScrFI	CCNGG	3 cut(s)	92, 114, 359
SetI	ASST	7 cut(s)	59, 106, 213, 231, 270, 285, 294
SfoI	GGCGCC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	344
SgrAI	CRCCGGYG	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SsiI	CCGC	5 cut(s)	62, 95, 146, 184, 234
SspDI	GGCGCC	1 cut(s)	64
StyD4I	CCNGG	3 cut(s)	90, 112, 357
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	5 cut(s)	29, 100, 201, 345, 385
TauI	GCSGC	3 cut(s)	65, 187, 237
TfiI	GAWTC	2 cut(s)	109, 387
TscAI	CASTG	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	3 cut(s)	206, 269, 389
TspRI	CASTG	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.