Prupe.5G002800_v2.0.a1

Calvin cycle protein CP12-3

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
408872 .. 410006
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G002800.1

Sequence Viewer

Length: 423 bp
ATGGCTTCTTGTTTATCAGGAGGATCGGGTGTGATGTGTTTGTCTGAAACTTATTTGAAGAAGAAGATTAATGATTTATCATCGCCTTCTTCTTCCTCTTTGTGCCTGAGATCGGACAATAATAATAAGAATAGGATGATAAAATGTGGGACGAAAAGTGGTGGGGTGCAGGGGAAGTTCAAAGGGACGCAGATGAGGGAGAAGCAACTGACGGAGATGATAGAGAAGAAAGTGATGGAAGCAAAGCAAGTGTGCGAGGGAGATCCCATCGCCGACGAGTGCAAGGTCGCCTGGGACGAGGTGGAGGAGGTCAGCCAAGCCAAGGCCGATCTCAGGCTCAAATTGGAGACCAACAAAGATCCTCTCGAGTCCTTCTGTCAAGACAACCCTGAAACCGACGAGTGCCGGATCTACGAAGATTAA

Protein Analysis

141

Amino Acids

15.58

Weight (kDa)

5.07

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015290)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76560
fragaria_vesca FvH4_5g26470
malus_domestica MD06G1001800.v1.1
prunus_persica Prupe.5G002800_v2.0.a1
pyrus_communis pycom06g00190
rosa_chinensis RchiOBHm_Chr7g0217381
rosa_laevigata RLG00000002483
rosa_multiflora Rmu_sc0014260.1_g000001 Rmu_sc0024636.1_g000001
rosa_roxburghii Rroxscaffold_3G00242270
rosa_rugosa Rorug07G0168600
rosa_samantha Rh7AG308300 Rh7BG299000 Rh7CG327600 Rh7DG307500
rosa_wichuraiana Rw7G026140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 31, 257, 353, 416
AfiI CCNNNNNNNGG 3 cut(s) 112, 322, 333
AgsI TTSAA 2 cut(s) 58, 181
AjnI CCWGG 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 4 cut(s) 31, 257, 353, 416
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 1 cut(s) 324
AseI ATTAAT 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 365
BccI CCATC 2 cut(s) 229, 275
BciT130I CCWGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 322, 333
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 291, 321
BseGI GGATG 1 cut(s) 141
BseLI CCNNNNNNNGG 3 cut(s) 112, 322, 333
BseMII CTCAG 2 cut(s) 98, 346
BseRI GAGGAG 1 cut(s) 320
BsgI GTGCAG 1 cut(s) 188
BshFI GGCC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 1 cut(s) 406
BslFI GGGAC 3 cut(s) 163, 199, 308
BslI CCNNNNNNNGG 3 cut(s) 112, 322, 333
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 3 cut(s) 163, 199, 308
BsnI GGCC 1 cut(s) 326
Bso31I GGTCTC 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 365
Bsp143I GATC 6 cut(s) 23, 110, 262, 328, 358, 408
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 2 cut(s) 99, 345
BspPI GGATC 4 cut(s) 31, 257, 353, 416
BspTNI GGTCTC 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 291, 321
BssMI GATC 6 cut(s) 23, 110, 262, 328, 358, 408
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 107, 332
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 6 cut(s) 26, 113, 265, 331, 361, 411
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 6 cut(s) 23, 110, 262, 328, 358, 408
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 290
BstX2I RGATCY 3 cut(s) 262, 358, 408
BstYI RGATCY 3 cut(s) 262, 358, 408
BsuRI GGCC 1 cut(s) 326
BtgZI GCGATG 2 cut(s) 66, 253
BtsCI GGATG 1 cut(s) 141
CseI GACGC 1 cut(s) 196
CviJI RGCY 5 cut(s) 5, 315, 320, 326, 337
CviKI_1 RGCY 5 cut(s) 5, 315, 320, 326, 337
DdeI CTNAG 2 cut(s) 107, 332
DpnI GATC 6 cut(s) 25, 112, 264, 330, 360, 410
DpnII GATC 6 cut(s) 23, 110, 262, 328, 358, 408
Eco130I CCWWGG 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaqI GGGAC 3 cut(s) 163, 199, 308
FokI GGATG 1 cut(s) 148
HaeIII GGCC 1 cut(s) 326
HapII CCGG 1 cut(s) 406
HgaI GACGC 1 cut(s) 196
HinfI GANTC 1 cut(s) 368
HpaII CCGG 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 46, 115
Hpy188III TCNNGA 3 cut(s) 18, 365, 380
Hpy99I CGWCG 2 cut(s) 278, 401
HpyAV CCTTC 2 cut(s) 96, 382
HpyCH4V TGCA 2 cut(s) 169, 282
HpyF3I CTNAG 2 cut(s) 107, 332
Kzo9I GATC 6 cut(s) 23, 110, 262, 328, 358, 408
LpnPI CCDG 8 cut(s) 3, 119, 155, 277, 304, 319, 402, 419
MalI GATC 6 cut(s) 25, 112, 264, 330, 360, 410
MboI GATC 6 cut(s) 23, 110, 262, 328, 358, 408
MboII GAAGA 6 cut(s) 70, 73, 76, 81, 84, 238
MflI RGATCY 3 cut(s) 262, 358, 408
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 377
MnlI CCTC 8 cut(s) 14, 106, 189, 250, 292, 298, 301, 372
MseI TTAA 2 cut(s) 69, 421
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 292
MvaI CCWGG 1 cut(s) 292
NdeII GATC 6 cut(s) 23, 110, 262, 328, 358, 408
PaeR7I CTCGAG 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PsuI RGATCY 3 cut(s) 262, 358, 408
SaqAI TTAA 2 cut(s) 69, 421
Sau3AI GATC 6 cut(s) 23, 110, 262, 328, 358, 408
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 292
SetI ASST 3 cut(s) 288, 303, 312
Sfr274I CTCGAG 1 cut(s) 365
SlaI CTCGAG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 290
StyI CCWWGG 1 cut(s) 321
TaqI TCGA 1 cut(s) 366
TasI AATT 1 cut(s) 341
Tru1I TTAA 2 cut(s) 69, 421
Tru9I TTAA 2 cut(s) 69, 421
TspGWI ACGGA 1 cut(s) 227
VspI ATTAAT 1 cut(s) 69
XhoI CTCGAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.