Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014260.1

Orthogroup ID

OG0015290

Physical Location & Seq

Genomic Coordinates Reverse (-)

401 .. 769

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014260.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ctgcgcttctctaacgatctaacgtcggcggcgccggtgtcctttgcgagatcgggcctggcggttcggggtacgaatccgggtgggcagaggaaggcgatgagagtgatggcggtggccaagttcaaggggacgcagatgagggagaagcggctgacggagatgatcgagaagaaggttctggaagccaagcaggtgtgcggcgagggagatccgatcacggacgagtgcaaggtggcgtgggatgaggtggaggaggtgagtcaagccaaggccgatctcaggctcaaaatgaaggacagtgatcctctcgagtcgttttgccaggacaatcctgagacggacgagtgtcgaatctacgaggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010109 GO:0010110 GO:0016151 GO:0019222 GO:0031323 GO:0031324 GO:0032991 GO:0033554 GO:0034059 GO:0034605 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044424 GO:0044444 GO:0044464 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0080090 GO:0080152 GO:0080153 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

122

Amino Acids

13.67

Weight (kDa)

5.17

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76560
fragaria_vesca	FvH4_5g26470
malus_domestica	MD06G1001800.v1.1
prunus_persica	Prupe.5G002800_v2.0.a1
pyrus_communis	pycom06g00190
rosa_chinensis	RchiOBHm_Chr7g0217381
rosa_laevigata	RLG00000002483
rosa_multiflora	Rmu_sc0014260.1_g000001 Rmu_sc0024636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242270
rosa_rugosa	Rorug07G0168600
rosa_samantha	Rh7AG308300 Rh7BG299000 Rh7CG327600 Rh7DG307500
rosa_wichuraiana	Rw7G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	31
AciI	CCGC	5 cut(s)	29, 62, 113, 151, 201
AclWI	GGATC	2 cut(s)	206, 299
AcoI	YGGCCR	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	57, 324
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	206, 299
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	3 cut(s)	55, 117, 273
AspLEI	GCGC	2 cut(s)	6, 34
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	31
BccI	CCATC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	59, 326
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	30, 152, 202
BlsI	GCNGC	3 cut(s)	31, 153, 203
Bme1390I	CCNGG	3 cut(s)	59, 81, 326
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	3 cut(s)	59, 81, 326
BoxI	GACNNNNGTC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	59, 326
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	295, 327
BseRI	GAGGAG	1 cut(s)	269
BshFI	GGCC	3 cut(s)	57, 119, 275
BshNI	GGYRCC	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	35, 80
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	3 cut(s)	57, 119, 275
BsoBI	CYCGRG	1 cut(s)	311
Bsp143I	GATC	7 cut(s)	16, 50, 165, 211, 216, 277, 304
BspACI	CCGC	5 cut(s)	29, 62, 113, 151, 201
BspANI	GGCC	3 cut(s)	57, 119, 275
BspCNI	CTCAG	2 cut(s)	294, 328
BspLI	GGNNCC	1 cut(s)	33
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	206, 299
BspT107I	GGYRCC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	7 cut(s)	16, 50, 165, 211, 216, 277, 304
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	59, 326
Bst4CI	ACNGT	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	281, 336
BstF5I	GGATG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	6, 34
BstKTI	GATC	7 cut(s)	19, 53, 168, 214, 219, 280, 307
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	7 cut(s)	16, 50, 165, 211, 216, 277, 304
BstNI	CCWGG	2 cut(s)	59, 326
BstPAI	GACNNNNGTC	1 cut(s)	348
BstSCI	CCNGG	3 cut(s)	57, 79, 324
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	57, 119, 275
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	307
BveI	ACCTGC	1 cut(s)	184
CfoI	GCGC	2 cut(s)	6, 34
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	72
CviJI	RGCY	7 cut(s)	57, 119, 154, 188, 269, 275, 286
CviKI_1	RGCY	7 cut(s)	57, 119, 154, 188, 269, 275, 286
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	281, 336
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	7 cut(s)	18, 52, 167, 213, 218, 279, 306
DpnII	GATC	7 cut(s)	16, 50, 165, 211, 216, 277, 304
EaeI	YGGCCR	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	57, 324
EcoT14I	CCWWGG	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	332
FaqI	GGGAC	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	30, 152, 202
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	30, 152, 202
GlaI	GCGC	2 cut(s)	5, 33
GluI	GCNGC	3 cut(s)	30, 152, 202
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	57, 119, 275
HapII	CCGG	2 cut(s)	35, 80
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	2 cut(s)	6, 34
Hin1I	GRCGYC	1 cut(s)	32
Hin6I	GCGC	2 cut(s)	4, 32
HinP1I	GCGC	2 cut(s)	4, 32
HinfI	GANTC	4 cut(s)	76, 262, 314, 354
HpaII	CCGG	2 cut(s)	35, 80
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	4 cut(s)	169, 182, 311, 335
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	88, 169, 289
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	231
HpyF3I	CTNAG	2 cut(s)	281, 336
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	32
HspAI	GCGC	2 cut(s)	4, 32
KasI	GGCGCC	1 cut(s)	31
Kzo9I	GATC	7 cut(s)	16, 50, 165, 211, 216, 277, 304
MaeII	ACGT	1 cut(s)	23
MalI	GATC	7 cut(s)	18, 52, 167, 213, 218, 279, 306
MboI	GATC	7 cut(s)	16, 50, 165, 211, 216, 277, 304
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	119
MluNI	TGGCCA	1 cut(s)	119
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	271, 323
MnlI	CCTC	8 cut(s)	84, 135, 199, 241, 247, 250, 318, 355
Mox20I	TGGCCA	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	2 cut(s)	35, 80
MspR9I	CCNGG	3 cut(s)	59, 81, 326
MvaI	CCWGG	2 cut(s)	59, 326
NarI	GGCGCC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	7 cut(s)	16, 50, 165, 211, 216, 277, 304
NlaIV	GGNNCC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	311
PaqCI	CACCTGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	76, 354
PkrI	GCNGC	3 cut(s)	31, 153, 203
PleI	GAGTC	2 cut(s)	270, 322
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	2 cut(s)	270, 322
PshAI	GACNNNNGTC	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	57, 324
PspGI	CCWGG	2 cut(s)	57, 324
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SatI	GCNGC	3 cut(s)	30, 152, 202
Sau3AI	GATC	7 cut(s)	16, 50, 165, 211, 216, 277, 304
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	271, 323
ScrFI	CCNGG	3 cut(s)	59, 81, 326
SetI	ASST	6 cut(s)	26, 180, 198, 237, 252, 261
SfoI	GGCGCC	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	311
SgrAI	CRCCGGYG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SsiI	CCGC	5 cut(s)	29, 62, 113, 151, 201
SspDI	GGCGCC	1 cut(s)	31
StyD4I	CCNGG	3 cut(s)	57, 79, 324
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	168, 312, 352
TauI	GCSGC	3 cut(s)	32, 154, 204
TfiI	GAWTC	2 cut(s)	76, 354
TscAI	CASTG	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	3 cut(s)	173, 236, 356
TspRI	CASTG	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.