Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015290

Physical Location & Seq

Genomic Coordinates Forward (+)

17942175 .. 17943066

Gene Structure 892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCGAGCTTAGCATCCCCTTCGCTTTCCACTCTGCGTTTCAGCACCGATTTAACGTCGGCGGCGTTGGTGTCCTTTCCGGTTCGGGTTGCGATTCCGGCGGGGCAGAGGAAGGTCGGAATGAGAGTGATGGCGGTGGCGAAGTTCAAGGGGACGCAGATGAGGGAGAAGCGTCTGACGGAGATGATCGAGAAGAAGGTTCTGGAAGCCAAGGAGGTTTGCGGCGAGGGAGATCCGATCACGGACGAGTGCAAGGTGGCGTGGGACGAGGTGGAGGAGGTGAGCCAAGCCAAGGCCGATCTCAGGCTCAAGCTCAAGGACAGTGATCCTCTCGAGTCGTTTTGTCAGGATAATCCTGAGACCGACGAGTGCCGAATCTATGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010109 GO:0010110 GO:0016151 GO:0019222 GO:0031323 GO:0031324 GO:0032991 GO:0033554 GO:0034059 GO:0034605 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044424 GO:0044444 GO:0044464 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0080090 GO:0080152 GO:0080153 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

130

Amino Acids

14.36

Weight (kDa)

4.92

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	59 - 128	8.8e-24	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76560
fragaria_vesca	FvH4_5g26470
malus_domestica	MD06G1001800.v1.1
prunus_persica	Prupe.5G002800_v2.0.a1
pyrus_communis	pycom06g00190
rosa_chinensis	RchiOBHm_Chr7g0217381
rosa_laevigata	RLG00000002483
rosa_multiflora	Rmu_sc0014260.1_g000001 Rmu_sc0024636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242270
rosa_rugosa	Rorug07G0168600
rosa_samantha	Rh7AG308300 Rh7BG299000 Rh7CG327600 Rh7DG307500
rosa_wichuraiana	Rw7G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	62, 101, 134, 222
AclWI	GGATC	2 cut(s)	227, 320
AfiI	CCNNNNNNNGG	2 cut(s)	292, 303
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	2 cut(s)	9, 313
AluI	AGCT	2 cut(s)	9, 313
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	2 cut(s)	227, 320
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	332
BccI	CCATC	1 cut(s)	124
BcgI	CGANNNNNNTGC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	353
BisI	GCNGC	2 cut(s)	63, 223
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	2 cut(s)	64, 224
BmeT110I	CYCGRG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	23
Bpu1102I	GCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	2 cut(s)	293, 299
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	210, 291
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 303
BseDI	CCNNGG	2 cut(s)	210, 291
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	292, 303
BseMII	CTCAG	2 cut(s)	316, 348
BseRI	GAGGAG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	80, 98
BslFI	GGGAC	2 cut(s)	166, 278
BslI	CCNNNNNNNGG	2 cut(s)	292, 303
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	2 cut(s)	166, 278
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	332
Bsp143I	GATC	5 cut(s)	186, 232, 237, 298, 325
Bsp1720I	GCTNAGC	1 cut(s)	10
BspACI	CCGC	4 cut(s)	62, 101, 134, 222
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	315, 349
BspPI	GGATC	2 cut(s)	227, 320
BspTNI	GGTCTC	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	210, 291
BssMI	GATC	5 cut(s)	186, 232, 237, 298, 325
BssT1I	CCWWGG	2 cut(s)	210, 291
Bst4CI	ACNGT	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	10, 302, 357
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	5 cut(s)	189, 235, 240, 301, 328
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	5 cut(s)	186, 232, 237, 298, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 98
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	7
CseI	GACGC	2 cut(s)	161, 163
CviJI	RGCY	7 cut(s)	9, 209, 285, 290, 296, 307, 313
CviKI_1	RGCY	7 cut(s)	9, 209, 285, 290, 296, 307, 313
DdeI	CTNAG	3 cut(s)	10, 302, 357
DpnI	GATC	5 cut(s)	188, 234, 239, 300, 327
DpnII	GATC	5 cut(s)	186, 232, 237, 298, 325
Eco130I	CCWWGG	2 cut(s)	210, 291
Eco31I	GGTCTC	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	332
EcoT14I	CCWWGG	2 cut(s)	210, 291
ErhI	CCWWGG	2 cut(s)	210, 291
FaiI	YATR	1 cut(s)	381
FaqI	GGGAC	2 cut(s)	166, 278
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	63, 223
Fsp4HI	GCNGC	2 cut(s)	63, 223
GluI	GCNGC	2 cut(s)	63, 223
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	2 cut(s)	80, 98
HgaI	GACGC	2 cut(s)	161, 163
HinfI	GANTC	3 cut(s)	94, 335, 375
HpaII	CCGG	2 cut(s)	80, 98
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	119, 177, 237
Hpy188III	TCNNGA	5 cut(s)	190, 203, 332, 347, 356
Hpy99I	CGWCG	2 cut(s)	61, 368
HpyAV	CCTTC	3 cut(s)	30, 106, 190
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 98
HpyF3I	CTNAG	3 cut(s)	10, 302, 357
HpySE526I	ACGT	1 cut(s)	56
Kzo9I	GATC	5 cut(s)	186, 232, 237, 298, 325
LpnPI	CCDG	6 cut(s)	93, 111, 188, 289, 332, 369
LweI	GCATC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	56
MalI	GATC	5 cut(s)	188, 234, 239, 300, 327
MboI	GATC	5 cut(s)	186, 232, 237, 298, 325
MboII	GAAGA	1 cut(s)	205
MflI	RGATCY	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	8 cut(s)	102, 156, 208, 220, 262, 268, 271, 339
MseI	TTAA	1 cut(s)	53
MspI	CCGG	2 cut(s)	80, 98
MwoI	GCNNNNNNNGC	2 cut(s)	11, 98
NdeII	GATC	5 cut(s)	186, 232, 237, 298, 325
PaeR7I	CTCGAG	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	94, 375
PkrI	GCNGC	2 cut(s)	64, 224
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	2 cut(s)	63, 223
Sau3AI	GATC	5 cut(s)	186, 232, 237, 298, 325
SchI	GAGTC	1 cut(s)	344
SetI	ASST	9 cut(s)	11, 59, 117, 201, 219, 258, 273, 282, 315
SfaNI	GCATC	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	3 cut(s)	308, 314, 332
SmoI	CTYRAG	3 cut(s)	308, 314, 332
SsiI	CCGC	4 cut(s)	62, 101, 134, 222
StyI	CCWWGG	2 cut(s)	210, 291
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	189, 333
TaqII	GACCGA	1 cut(s)	377
TauI	GCSGC	2 cut(s)	65, 225
TfiI	GAWTC	2 cut(s)	94, 375
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	328
TspGWI	ACGGA	2 cut(s)	194, 257
TspRI	CASTG	1 cut(s)	328
XhoI	CTCGAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.