Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0015290

Physical Location & Seq

Genomic Coordinates Forward (+)

28343614 .. 28345792

Gene Structure 2179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG299000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTTAAGCCCAACCAACCAAGGTCTTCCATTATTAACTTGTTTATTAGGGCCCAGCCAATAGAAACAACAGAGAAAGGGAGAGAAAGAAGAGCTTTGGATCAAATTCAAAAAACCATGGCGTGCCTATCATCTACATCTCTTTCGACTCTGCGTTTCTCCAACGATCTAACGTCGGCGGCGTCGGTGTCCTTTGCGAGATCGGGCCTGGAGGTTCGGGTTCCGAATCCGGTCGGGCAGAGGAAGGCGATGAGAGTGATGGCGGTGGCCAAGTTCAAGGGGACGCAGATGAGGGAGAAGCGGCTGACGGAGATGATCGAGAAGAAGGTTCTGGAAGCCAAGCAGGTGTGCGGCGAGGGAGATCCGATCACGGACGAGTGCAAGGTGGCGTGGGACGAGGTGGAGGAGGTGAGTCAAGCCAAGGCCGATCTCAGGCTCAAAATGAAGGACAGTGATCCTCTCGAGTCGTTTTGCGAGGACAATCCTGAGACGGACGAGTGCCGAATCTACGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006109 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009536 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010109 GO:0010110 GO:0016151 GO:0019222 GO:0031323 GO:0031324 GO:0032991 GO:0033554 GO:0034059 GO:0034605 GO:0036293 GO:0036294 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044424 GO:0044444 GO:0044464 GO:0045912 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070482 GO:0070887 GO:0071453 GO:0071454 GO:0080090 GO:0080152 GO:0080153 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CP12

Protein Analysis

172

Amino Acids

19.43

Weight (kDa)

5.78

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CP12	PF02672	102 - 171	1e-23	CP12 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76560
fragaria_vesca	FvH4_5g26470
malus_domestica	MD06G1001800.v1.1
prunus_persica	Prupe.5G002800_v2.0.a1
pyrus_communis	pycom06g00190
rosa_chinensis	RchiOBHm_Chr7g0217381
rosa_laevigata	RLG00000002483
rosa_multiflora	Rmu_sc0014260.1_g000001 Rmu_sc0024636.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242270
rosa_rugosa	Rorug07G0168600
rosa_samantha	Rh7AG308300 Rh7BG299000 Rh7CG327600 Rh7DG307500
rosa_wichuraiana	Rw7G026140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AciI	CCGC	4 cut(s)	179, 263, 301, 351
AclWI	GGATC	3 cut(s)	108, 356, 449
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	110, 277
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	3 cut(s)	108, 356, 449
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	4 cut(s)	51, 205, 267, 423
ApaI	GGGCCC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	51, 52, 205
AsuHPI	GGTGA	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	18
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	3 cut(s)	180, 302, 352
BlsI	GCNGC	3 cut(s)	181, 303, 353
Bme1390I	CCNGG	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	3 cut(s)	51, 52, 205
BmiI	GGNNCC	2 cut(s)	53, 222
BmrFI	CCNGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	20, 117, 420
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	20, 117, 420
BseLI	CCNNNNNNNGG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	445, 477
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	4 cut(s)	53, 207, 269, 425
BsiEI	CGRYCG	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	295, 407
BslI	CCNNNNNNNGG	1 cut(s)	432
BsmAI	GTCTC	1 cut(s)	482
BsmBI	CGTCTC	1 cut(s)	482
BsmFI	GGGAC	2 cut(s)	295, 407
BsnI	GGCC	4 cut(s)	53, 207, 269, 425
BsoBI	CYCGRG	1 cut(s)	461
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	8 cut(s)	100, 166, 200, 315, 361, 366, 427, 454
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	4 cut(s)	179, 263, 301, 351
BspANI	GGCC	4 cut(s)	53, 207, 269, 425
BspCNI	CTCAG	2 cut(s)	444, 478
BspLI	GGNNCC	2 cut(s)	53, 222
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	3 cut(s)	108, 356, 449
BspQI	GCTCTTC	1 cut(s)	85
BssECI	CCNNGG	3 cut(s)	20, 117, 420
BssMI	GATC	8 cut(s)	100, 166, 200, 315, 361, 366, 427, 454
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	3 cut(s)	20, 117, 420
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	431, 486
BstDSI	CCRYGG	1 cut(s)	117
BstKTI	GATC	8 cut(s)	103, 169, 203, 318, 364, 369, 430, 457
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	8 cut(s)	100, 166, 200, 315, 361, 366, 427, 454
BstMCI	CGRYCG	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	53, 207, 269, 425
BtgI	CCRYGG	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	457
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	51, 52, 205
CseI	GACGC	2 cut(s)	171, 292
CviAII	CATG	1 cut(s)	118
DdeI	CTNAG	2 cut(s)	431, 486
DpnI	GATC	8 cut(s)	102, 168, 202, 317, 363, 368, 429, 456
DpnII	GATC	8 cut(s)	100, 166, 200, 315, 361, 366, 427, 454
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	3 cut(s)	20, 117, 420
Eco24I	GRGCYC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	3 cut(s)	20, 117, 420
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	3 cut(s)	20, 117, 420
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	1 cut(s)	121
FaiI	YATR	1 cut(s)	119
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	2 cut(s)	295, 407
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	180, 302, 352
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	3 cut(s)	180, 302, 352
GluI	GCNGC	3 cut(s)	180, 302, 352
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	4 cut(s)	53, 207, 269, 425
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	2 cut(s)	171, 292
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	5 cut(s)	148, 226, 412, 464, 504
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	225, 366
Hpy188III	TCNNGA	4 cut(s)	319, 332, 461, 485
Hpy99I	CGWCG	2 cut(s)	178, 187
HpyAV	CCTTC	3 cut(s)	238, 319, 439
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	381
HpyF3I	CTNAG	2 cut(s)	431, 486
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	8 cut(s)	100, 166, 200, 315, 361, 366, 427, 454
LguI	GCTCTTC	1 cut(s)	85
LpnPI	CCDG	8 cut(s)	68, 194, 221, 243, 317, 329, 418, 498
MaeII	ACGT	1 cut(s)	173
MalI	GATC	8 cut(s)	102, 168, 202, 317, 363, 368, 429, 456
MboI	GATC	8 cut(s)	100, 166, 200, 315, 361, 366, 427, 454
MboII	GAAGA	3 cut(s)	18, 102, 334
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	3 cut(s)	142, 421, 473
MmeI	TCCRAC	1 cut(s)	186
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	2 cut(s)	6, 36
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	8 cut(s)	100, 166, 200, 315, 361, 366, 427, 454
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	53, 222
PaeR7I	CTCGAG	1 cut(s)	461
PaqCI	CACCTGC	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	226, 504
PkrI	GCNGC	3 cut(s)	181, 303, 353
PleI	GAGTC	3 cut(s)	142, 420, 472
PpsI	GAGTC	3 cut(s)	142, 420, 472
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	53, 222
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	51, 52, 205
PsuI	RGATCY	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	6, 36
SatI	GCNGC	3 cut(s)	180, 302, 352
Sau3AI	GATC	8 cut(s)	100, 166, 200, 315, 361, 366, 427, 454
Sau96I	GGNCC	3 cut(s)	51, 52, 205
SchI	GAGTC	3 cut(s)	142, 421, 473
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	9 cut(s)	26, 97, 176, 216, 330, 348, 387, 402, 411
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	4 cut(s)	179, 263, 301, 351
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	3 cut(s)	20, 117, 420
TaaI	ACNGT	1 cut(s)	452
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	146, 318, 462
TasI	AATT	1 cut(s)	105
TauI	GCSGC	3 cut(s)	182, 304, 354
TfiI	GAWTC	2 cut(s)	226, 504
Tru1I	TTAA	2 cut(s)	6, 36
Tru9I	TTAA	2 cut(s)	6, 36
TscAI	CASTG	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	3 cut(s)	323, 386, 506
TspRI	CASTG	1 cut(s)	457
XapI	RAATTY	1 cut(s)	105
XhoI	CTCGAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.