AT1G76705

IQ-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012790
Physical Location & Seq
Forward (+)
28786290 .. 28787328
1039 bp
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UTR
Exon/CDS
Intron
AT1G76705.1

Sequence Viewer

Length: 462 bp
ATGGACATGAGTCTCCATTTTCTTTCCCAAGGAGATCTTTCAGGCGTCTGGGGCAGAGTCTATTGGAGGAGGAGAGCTGGTTTCAAAGCTATCAAGATTCAGAGTGCATTCAAGGCTTATTTGGCCAGGAAAGCGTTGTGGGCGGGGAAGTGCAATGGCTGGGACAGTAGTGCTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAAGCAAGAAGGTGTGATCAAGCGCGATCGTATGTTGAAATACTCCCGGTCTCATCAGGAGAGAAGAAGTCCTCATATGCTTGAGGACTCACTGAGCACACCAAGGCAACGTGTAGGGCTCATGGATTCTTTGTTTGTTAACTACAAGAAGGATGGGGATAAAGTCTCTCTCTGGACTTCTTTTGTCTGCGAAAATAGTAAGATTAACAACGCTAAGAAGTCGTCTCTGACCACATATCAACATAATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

153

Amino Acids

17.78

Weight (kDa)

10.05

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76705 AT5G03960 AT5G03960 AT5G03960
fragaria_vesca FvH4_6g24720
malus_domestica MD14G1079600.v1.1
prunus_persica Prupe.7G050600_v2.0.a1
pyrus_communis pycom12g07200 pycom12g07210
rosa_chinensis RchiOBHm_Chr3g0484271
rosa_laevigata RLG00000023235
rosa_rugosa Rorug03G0210500 Rorug03G0210500
rosa_samantha Rh3AG259500 Rh3BG296100 Rh3CG293600 Rh3DG289500
rosa_wichuraiana Rw3G023400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 234
AciI CCGC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 45
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 3 cut(s) 85, 112, 247
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 2 cut(s) 77, 89
AluI AGCT 2 cut(s) 77, 89
Alw21I GWGCWC 2 cut(s) 175, 308
Alw26I GTCTC 4 cut(s) 17, 264, 379, 438
AoxI GGCC 1 cut(s) 123
AspLEI GCGC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 256
BalI TGGCCA 1 cut(s) 125
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 175, 308
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 127
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 4 cut(s) 17, 264, 379, 438
BglII AGATCT 1 cut(s) 34
Bme1390I CCNGG 2 cut(s) 127, 256
BmrFI CCNGG 2 cut(s) 127, 256
BoxI GACNNNNGTC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 28, 311
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 28, 311
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 293
BseRI GAGGAG 2 cut(s) 82, 85
BseYI CCCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 175, 308
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 4 cut(s) 17, 264, 379, 438
BsmBI CGTCTC 1 cut(s) 438
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 175, 308, 330
Bsp143I GATC 3 cut(s) 34, 225, 235
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 294
BspFNI CGCG 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 28, 311
BssMI GATC 3 cut(s) 34, 225, 235
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 2 cut(s) 28, 311
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 302, 423
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 3 cut(s) 37, 228, 238
BstMAI GTCTC 4 cut(s) 17, 264, 379, 438
BstMBI GATC 3 cut(s) 34, 225, 235
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 5 cut(s) 51, 113, 122, 131, 140
BstNI CCWGG 1 cut(s) 127
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 2 cut(s) 125, 254
BstUI CGCG 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 234
CseI GACGC 1 cut(s) 34
CviAII CATG 2 cut(s) 7, 331
CviJI RGCY 7 cut(s) 77, 89, 116, 125, 159, 197, 328
CviKI_1 RGCY 7 cut(s) 77, 89, 116, 125, 159, 197, 328
DdeI CTNAG 2 cut(s) 302, 423
DpnI GATC 3 cut(s) 36, 227, 237
DpnII GATC 3 cut(s) 34, 225, 235
EaeI YGGCCR 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 28, 311
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 28, 311
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 2 cut(s) 28, 311
Esp3I CGTCTC 1 cut(s) 438
FaeI CATG 2 cut(s) 10, 334
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 1 cut(s) 176
FatI CATG 2 cut(s) 6, 330
FauI CCCGC 1 cut(s) 136
FauNDI CATATG 2 cut(s) 200, 285
FbaI TGATCA 1 cut(s) 225
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 330
GlaI GCGC 1 cut(s) 233
GsaI CCCAGC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 256
HgaI GACGC 1 cut(s) 34
HhaI GCGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 10, 334
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 5 cut(s) 10, 57, 97, 296, 335
HpaI GTTAAC 1 cut(s) 349
HpaII CCGG 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 2 cut(s) 102, 438
Hpy188III TCNNGA 4 cut(s) 94, 178, 266, 382
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 3 cut(s) 175, 212, 352
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 107, 153
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 113, 122, 131, 140
HpyF3I CTNAG 2 cut(s) 302, 423
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 10, 334
HspAI GCGC 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 225
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 3 cut(s) 34, 225, 235
LpnPI CCDG 9 cut(s) 27, 34, 63, 112, 139, 145, 251, 269, 367
MaeII ACGT 1 cut(s) 319
MalI GATC 3 cut(s) 36, 227, 237
MboI GATC 3 cut(s) 34, 225, 235
MboII GAAGA 2 cut(s) 197, 285
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 3 cut(s) 175, 308, 330
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 1 cut(s) 454
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 3 cut(s) 19, 66, 290
MnlI CCTC 5 cut(s) 60, 63, 201, 286, 291
Mox20I TGGCCA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 125
MseI TTAA 3 cut(s) 348, 414, 460
Msp20I TGGCCA 1 cut(s) 125
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 2 cut(s) 127, 256
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 5 cut(s) 51, 113, 122, 131, 140
NciI CCSGG 1 cut(s) 256
NdeI CATATG 2 cut(s) 200, 285
NdeII GATC 3 cut(s) 34, 225, 235
NlaIII CATG 2 cut(s) 10, 334
PctI GAATGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 97, 335
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 3 cut(s) 18, 65, 290
PpsI GAGTC 3 cut(s) 18, 65, 290
PshAI GACNNNNGTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 34
PvuI CGATCG 1 cut(s) 238
SaqAI TTAA 3 cut(s) 348, 414, 460
Sau3AI GATC 3 cut(s) 34, 225, 235
SchI GAGTC 3 cut(s) 19, 66, 290
ScrFI CCNGG 2 cut(s) 127, 256
SduI GDGCHC 3 cut(s) 175, 308, 330
SetI ASST 4 cut(s) 79, 91, 223, 322
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 454
SsiI CCGC 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 125, 254
StyI CCWWGG 2 cut(s) 28, 311
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 322
TasI AATT 1 cut(s) 454
TfiI GAWTC 2 cut(s) 97, 335
Tru1I TTAA 3 cut(s) 348, 414, 460
Tru9I TTAA 3 cut(s) 348, 414, 460
TscAI CASTG 1 cut(s) 306
TspRI CASTG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.