Prupe.7G050600_v2.0.a1

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012790
Physical Location & Seq
Forward (+)
8774084 .. 8777335
3252 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G050600.1

Sequence Viewer

Length: 1215 bp
ATGGCGAAGAGAAAGGGCTGGTTTGGTTGGGTGAAGAGGTTCTTTACTTCTGAAGCAAAGACAAGGACACAAAAGAAATCAAACAACTGGAGATGGATTTTTCGAAGACTTGAAGTACTTCATCAATACCCTGCACAGGCTGCACTGACAGCACCAGAGAGGACACTACGTGAAGCTACGGAAGAGCAGAAAAAACACGCTTTCAATGTTGCAATGGCGACAGCAGCTGCAGCTGAGGCAGCAGTGGCTGCTGCCCATGCTGCAGCTGAGGTTGTACGGCTTACTTCACAACCTTACCACTATTTCACAAAGTTTGACAAGAACTTGGCTGCCATTAAAATTCAAAGCGCTTATCGGGCACATCTTGCAAGGAAAGCATTGCGAGCCTTGAAGGGACTGGTGAGACTTCAAGCCATAGTTCGTGGCCGGGCTGTGAGACGCCAGGCAGCTACCACTTTGAAGAGTTTGCCATCCGACAGAAGAGGTCAGGCAGAGATTTGGAAAAGGAGCATTCCAGCTGCAAATGAGGGATGCAATGACGGTGAAAAGAAACAGTTCAGCAGCCCACAAAGGGAGTTAGAAGAAAAAGAAGCGACACTTGAATGCAGCAGCCAGAGAGGGTGGGATTGCAGTATAATTTCAAAGGAAGACATGGAAGCCGTTCGGCTAAGAAAGCAAGAGGCCATGATCAAAAGAGAGCGGATGAAGAAATACTCATTTTCTCTACGGGAAAGCAGAAATGTTCAAATGCTAGACGATTCAATGATCGAAAACGCAACTGAAACGCTAACCGTTCATTCAAATCTAAGTGGTTGTACTGATGAAAAGTTTGGAGGATCACAACTTAAACTGAGACGTGTGAGAAATGAAGATTCAATGGAAGGATTGAGTCCACAATTTCAATTATTACCAAGGAGATCATTTTGCAATGCAGAAGAGAACAATTCTGCTCAACATCAGCATGACAGATTGATGGCATCTTCTGCAGTTCTTCCAACTTACATGGCCGTGACAGCATCTGCCAAGGCGAAGACAAGGTCGCTAAGCACCCCGAAGCAACGCCTAGAATTCCAGGATCGAAAGTACTCCAATCATAGCTTTTCACACAACAATGGGCTTTCTCTTTGTTCTTCATATGATGCTGAATCTATTGGGAAGTATAGTAAGAATGGATGGGGTTCATTGGCAGATATATTCAAGCAATATCACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

405

Amino Acids

45.98

Weight (kDa)

9.93

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76705 AT5G03960 AT5G03960 AT5G03960
fragaria_vesca FvH4_6g24720
malus_domestica MD14G1079600.v1.1
prunus_persica Prupe.7G050600_v2.0.a1
pyrus_communis pycom12g07200 pycom12g07210
rosa_chinensis RchiOBHm_Chr3g0484271
rosa_laevigata RLG00000023235
rosa_rugosa Rorug03G0210500 Rorug03G0210500
rosa_samantha Rh3AG259500 Rh3BG296100 Rh3CG293600 Rh3DG289500
rosa_wichuraiana Rw3G023400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 700
AciI CCGC 1 cut(s) 700
AclWI GGATC 2 cut(s) 844, 1083
AcoI YGGCCR 2 cut(s) 424, 1005
AcsI RAATTY 2 cut(s) 339, 1067
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 439
AdeI CACNNNGTG 1 cut(s) 170
AfaI GTAC 4 cut(s) 117, 276, 817, 1085
AfeI AGCGCT 1 cut(s) 349
AfiI CCNNNNNNNGG 2 cut(s) 136, 571
AflIII ACRYGT 1 cut(s) 856
AjiI CACGTC 1 cut(s) 857
AjnI CCWGG 2 cut(s) 441, 1071
AluBI AGCT 7 cut(s) 176, 227, 233, 266, 449, 518, 1098
AluI AGCT 7 cut(s) 176, 227, 233, 266, 449, 518, 1098
Alw26I GTCTC 3 cut(s) 397, 430, 847
AlwI GGATC 2 cut(s) 844, 1083
AlwNI CAGNNNCTG 3 cut(s) 227, 248, 1019
Aor51HI AGCGCT 1 cut(s) 349
AoxI GGCC 3 cut(s) 424, 681, 1005
ApoI RAATTY 2 cut(s) 339, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 1022, 1054
Asp700I GAANNNNTTC 4 cut(s) 38, 117, 554, 660
AspLEI GCGC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 4 cut(s) 43, 412, 554, 1199
AsuII TTCGAA 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 361
BbsI GAAGAC 3 cut(s) 112, 654, 1037
BbvCI CCTCAGC 2 cut(s) 234, 267
BccI CCATC 4 cut(s) 87, 478, 967, 1167
BceAI ACGGC 3 cut(s) 293, 644, 992
BciT130I CCWGG 2 cut(s) 443, 1073
BclI TGATCA 1 cut(s) 687
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 3 cut(s) 397, 430, 847
BfaI CTAG 2 cut(s) 752, 1064
BfmI CTRYAG 3 cut(s) 228, 261, 984
BfoI RGCGCY 1 cut(s) 351
BlpI GCTNAGC 1 cut(s) 1043
BmcAI AGTACT 2 cut(s) 117, 1085
Bme1390I CCNGG 3 cut(s) 428, 443, 1073
BmgBI CACGTC 1 cut(s) 857
BmrFI CCNGG 3 cut(s) 428, 443, 1073
BmsI GCATC 4 cut(s) 521, 986, 1025, 1129
BpiI GAAGAC 3 cut(s) 112, 654, 1037
BpmI CTGGAG 1 cut(s) 109
Bpu10I CCTNAGC 2 cut(s) 234, 267
Bpu1102I GCTNAGC 1 cut(s) 1043
Bpu14I TTCGAA 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 439
BsaJI CCNNGG 2 cut(s) 911, 1023
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 571
Bse1I ACTGG 2 cut(s) 92, 402
Bse3DI GCAATG 4 cut(s) 219, 377, 541, 934
BseBI CCWGG 2 cut(s) 443, 1073
BseDI CCNNGG 2 cut(s) 911, 1023
BseGI GGATG 4 cut(s) 470, 536, 708, 1178
BseLI CCNNNNNNNGG 2 cut(s) 136, 571
BseMI GCAATG 4 cut(s) 219, 377, 541, 934
BseMII CTCAG 3 cut(s) 225, 258, 842
BseNI ACTGG 2 cut(s) 92, 402
BseSI GKGCMC 1 cut(s) 361
BsgI GTGCAG 2 cut(s) 117, 126
BshFI GGCC 3 cut(s) 426, 683, 1007
BsiSI CCGG 1 cut(s) 427
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 136, 571
BsmAI GTCTC 3 cut(s) 397, 430, 847
BsmBI CGTCTC 2 cut(s) 430, 847
BsmFI GGGAC 1 cut(s) 408
BsmI GAATGC 2 cut(s) 510, 608
BsnI GGCC 3 cut(s) 426, 683, 1007
Bsp119I TTCGAA 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 5 cut(s) 687, 765, 836, 917, 1075
Bsp1720I GCTNAGC 1 cut(s) 1043
BspACI CCGC 1 cut(s) 700
BspANI GGCC 3 cut(s) 426, 683, 1007
BspCNI CTCAG 3 cut(s) 226, 259, 843
BspMAI CTGCAG 3 cut(s) 232, 265, 988
BspPI GGATC 2 cut(s) 844, 1083
BspQI GCTCTTC 1 cut(s) 177
BspT104I TTCGAA 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 700
BsrDI GCAATG 4 cut(s) 219, 377, 541, 934
BsrI ACTGG 2 cut(s) 92, 402
BssECI CCNNGG 2 cut(s) 911, 1023
BssMI GATC 5 cut(s) 687, 765, 836, 917, 1075
BssNI GRCGYC 1 cut(s) 439
BssT1I CCWWGG 2 cut(s) 911, 1023
Bst2UI CCWGG 2 cut(s) 443, 1073
Bst4CI ACNGT 3 cut(s) 542, 555, 793
Bst6I CTCTTC 6 cut(s) 2, 29, 177, 455, 475, 930
BstACI GRCGYC 1 cut(s) 439
BstAPI GCANNNNNTGC 4 cut(s) 140, 248, 365, 983
BstBAI YACGTR 1 cut(s) 170
BstBI TTCGAA 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 6 cut(s) 234, 267, 668, 806, 851, 1043
BstF5I GGATG 4 cut(s) 470, 536, 708, 1178
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 5 cut(s) 690, 768, 839, 920, 1078
BstMAI GTCTC 3 cut(s) 397, 430, 847
BstMBI GATC 5 cut(s) 687, 765, 836, 917, 1075
BstNI CCWGG 2 cut(s) 443, 1073
BstSCI CCNGG 3 cut(s) 426, 441, 1071
BstSFI CTRYAG 3 cut(s) 228, 261, 984
BstSLI GKGCMC 1 cut(s) 361
BstV2I GAAGAC 3 cut(s) 112, 654, 1037
BsuRI GGCC 3 cut(s) 426, 683, 1007
BtrI CACGTC 1 cut(s) 857
BtsCI GGATG 4 cut(s) 470, 536, 708, 1178
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 2 cut(s) 143, 249
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 3 cut(s) 227, 248, 1019
CfoI GCGC 1 cut(s) 350
CseI GACGC 1 cut(s) 447
Csp6I GTAC 4 cut(s) 116, 275, 816, 1084
CviAII CATG 5 cut(s) 257, 652, 685, 962, 1003
CviQI GTAC 4 cut(s) 116, 275, 816, 1084
DdeI CTNAG 6 cut(s) 234, 267, 668, 806, 851, 1043
DpnI GATC 5 cut(s) 689, 767, 838, 919, 1077
DpnII GATC 5 cut(s) 687, 765, 836, 917, 1075
DraIII CACNNNGTG 1 cut(s) 170
EaeI YGGCCR 2 cut(s) 424, 1005
Eam1104I CTCTTC 6 cut(s) 2, 29, 177, 455, 475, 930
EarI CTCTTC 6 cut(s) 2, 29, 177, 455, 475, 930
Eco130I CCWWGG 2 cut(s) 911, 1023
Eco47III AGCGCT 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 1067
EcoRII CCWGG 2 cut(s) 441, 1071
EcoT14I CCWWGG 2 cut(s) 911, 1023
ErhI CCWWGG 2 cut(s) 911, 1023
Esp3I CGTCTC 2 cut(s) 430, 847
FaeI CATG 5 cut(s) 260, 655, 688, 965, 1006
FalI AAGNNNNNCTT 4 cut(s) 26, 58, 582, 614
FaqI GGGAC 1 cut(s) 408
FatI CATG 5 cut(s) 256, 651, 684, 961, 1002
FauNDI CATATG 1 cut(s) 1135
FbaI TGATCA 1 cut(s) 687
FokI GGATG 4 cut(s) 457, 543, 715, 1185
FspBI CTAG 2 cut(s) 752, 1064
GlaI GCGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 3 cut(s) 426, 683, 1007
HapII CCGG 1 cut(s) 427
HgaI GACGC 1 cut(s) 447
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 439
Hin1II CATG 5 cut(s) 260, 655, 688, 965, 1006
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HinfI GANTC 4 cut(s) 758, 872, 889, 1145
HpaII CCGG 1 cut(s) 427
HphI GGTGA 4 cut(s) 43, 412, 554, 1199
Hpy166II GTNNAC 1 cut(s) 893
Hpy188I TCNGA 2 cut(s) 52, 475
Hpy8I GTNNAC 1 cut(s) 893
HpyAV CCTTC 2 cut(s) 385, 875
HpyCH4III ACNGT 3 cut(s) 542, 555, 793
HpyCH4IV ACGT 2 cut(s) 169, 856
HpyF3I CTNAG 6 cut(s) 234, 267, 668, 806, 851, 1043
HpySE526I ACGT 2 cut(s) 169, 856
Hsp92I GRCGYC 1 cut(s) 439
Hsp92II CATG 5 cut(s) 260, 655, 688, 965, 1006
HspAI GCGC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 687
Kzo9I GATC 5 cut(s) 687, 765, 836, 917, 1075
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 507
LweI GCATC 4 cut(s) 521, 986, 1025, 1129
MaeI CTAG 2 cut(s) 752, 1064
MaeII ACGT 2 cut(s) 169, 856
MaeIII GTNAC 1 cut(s) 1009
MalI GATC 5 cut(s) 689, 767, 838, 919, 1077
MbiI CCGCTC 1 cut(s) 700
MboI GATC 5 cut(s) 687, 765, 836, 917, 1075
MhlI GDGCHC 1 cut(s) 361
MluCI AATT 6 cut(s) 339, 636, 896, 902, 943, 1067
MlyI GAGTC 1 cut(s) 898
MmeI TCCRAC 2 cut(s) 498, 1019
MnlI CCTC 9 cut(s) 30, 153, 229, 262, 476, 520, 611, 673, 827
MroXI GAANNNNTTC 4 cut(s) 38, 117, 554, 660
MseI TTAA 3 cut(s) 336, 846, 1213
MslI CAYNNNNRTG 4 cut(s) 601, 960, 1007, 1110
MspA1I CMGCKG 4 cut(s) 227, 233, 266, 518
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 3 cut(s) 428, 443, 1073
Mva1269I GAATGC 2 cut(s) 510, 608
MvaI CCWGG 2 cut(s) 443, 1073
NciI CCSGG 1 cut(s) 428
NdeI CATATG 1 cut(s) 1135
NdeII GATC 5 cut(s) 687, 765, 836, 917, 1075
NlaIII CATG 5 cut(s) 260, 655, 688, 965, 1006
NmuCI GTSAC 1 cut(s) 1009
NspV TTCGAA 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 2 cut(s) 510, 608
PdmI GAANNNNTTC 4 cut(s) 38, 117, 554, 660
PfeI GAWTC 3 cut(s) 758, 872, 1145
PflFI GACNNNGTC 1 cut(s) 1036
PfoI TCCNGGA 1 cut(s) 1071
PleI GAGTC 1 cut(s) 897
PpsI GAGTC 1 cut(s) 897
Ppu21I YACGTR 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 441, 1071
PspGI CCWGG 2 cut(s) 441, 1071
PstI CTGCAG 3 cut(s) 232, 265, 988
PstNI CAGNNNCTG 3 cut(s) 227, 248, 1019
PsyI GACNNNGTC 1 cut(s) 1036
PvuII CAGCTG 4 cut(s) 227, 233, 266, 518
RsaI GTAC 4 cut(s) 117, 276, 817, 1085
RsaNI GTAC 4 cut(s) 116, 275, 816, 1084
RseI CAYNNNNRTG 4 cut(s) 601, 960, 1007, 1110
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 336, 846, 1213
Sau3AI GATC 5 cut(s) 687, 765, 836, 917, 1075
ScaI AGTACT 2 cut(s) 117, 1085
SchI GAGTC 1 cut(s) 898
ScrFI CCNGG 3 cut(s) 428, 443, 1073
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 4 cut(s) 521, 986, 1025, 1129
SfcI CTRYAG 3 cut(s) 228, 261, 984
SfuI TTCGAA 1 cut(s) 103
SmiMI CAYNNNNRTG 4 cut(s) 601, 960, 1007, 1110
Sse9I AATT 6 cut(s) 339, 636, 896, 902, 943, 1067
SsiI CCGC 1 cut(s) 700
SspMI CTAG 2 cut(s) 752, 1064
StyD4I CCNGG 3 cut(s) 426, 441, 1071
StyI CCWWGG 2 cut(s) 911, 1023
TaaI ACNGT 3 cut(s) 542, 555, 793
TaiI ACGT 2 cut(s) 172, 859
TaqI TCGA 3 cut(s) 103, 768, 1078
TasI AATT 6 cut(s) 339, 636, 896, 902, 943, 1067
TatI WGTACW 3 cut(s) 115, 815, 1083
TfiI GAWTC 3 cut(s) 758, 872, 1145
Tru1I TTAA 3 cut(s) 336, 846, 1213
Tru9I TTAA 3 cut(s) 336, 846, 1213
TscAI CASTG 2 cut(s) 150, 249
TseFI GTSAC 1 cut(s) 1009
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 7 cut(s) 110, 719, 785, 837, 882, 1122, 1170
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 2 cut(s) 150, 249
Tth111I GACNNNGTC 1 cut(s) 1036
XapI RAATTY 2 cut(s) 339, 1067
XmnI GAANNNNTTC 4 cut(s) 38, 117, 554, 660
XspI CTAG 2 cut(s) 752, 1064
ZrmI AGTACT 2 cut(s) 117, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.