Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012790

Physical Location & Seq

Genomic Coordinates Reverse (-)

18725834 .. 18729595

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCAAGAACAAAGGGCTGGTTTGGCTGGGTGAAGAGGCTCTTTACTCCTGAATCAAAGACAAACACAAAAAAGATATCAAACAAGTGCAGATGGATTTTTGGAAGGCTTGAATGTCAGCACTACCCTTCTCTGCCTGTGCTCACAGCATCAGAAAGAGCATTTAGTGAAGCTACAGAAGAGCAGAGAAAACATGCATTGATTGTTGCAAGAGCAACAGCGGTTGCAGCCAAGGCAGCTGTAGCTGCTGCCCAAGCTGCGGCTGAGGTTGTGCGCCTAGCGGGATCTTCTCAATCTTTCCACCATTTCACAATGATGGACAGGAACTTTGCTGCCACTAAAATTCAAAGTGCTTATCGCGCGCATCTTGCCAGGAAAGCATTGCGAGCCTTGCGAGGACTGGTCAGGCTTCAAGCCATAGTTCGTGGCCGAGCTGTGAGGCGTCAACTTATCTCTTTGAAGCGGTTGCCATCTAACAGAAAAGGGCAGACAGAGGTTATGAAAAGGAGCATCTCTACCACAGATGTCAGATGCAATGGTAGCGAAAAGAAGCATCTCAGCATGTCAAAAGGGGTGTTGGATGAGAAAGAAATAACAATTTTATGCAGCAGCAATCAGATAAGGTGGGATGACAGTCTAATTTCAAAAGAGGACATTGATGCAATATGGCTAAGAAAGCAAGAGGCCAGAATCAAAAGAGAGCGGATGAAGAAATACTCGTTCTCTGTCCGGGAAAGCAGGAATGAGAAAATGTTAGAAGAGTCAAATGGTAGTACTGGTGGAATGTTTGGAACTTCACAAGTTAAACTGAGACATTTGAGAAATGAATATTCAGTGGAAGGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0016491 GO:0031082 GO:0031083 GO:0032991 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BLOC1_2

Protein Analysis

283

Amino Acids

32.09

Weight (kDa)

10.64

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76705 AT5G03960 AT5G03960 AT5G03960
fragaria_vesca	FvH4_6g24720
malus_domestica	MD14G1079600.v1.1
prunus_persica	Prupe.7G050600_v2.0.a1
pyrus_communis	pycom12g07200 pycom12g07210
rosa_chinensis	RchiOBHm_Chr3g0484271
rosa_laevigata	RLG00000023235
rosa_rugosa	Rorug03G0210500 Rorug03G0210500
rosa_samantha	Rh3AG259500 Rh3BG296100 Rh3CG293600 Rh3DG289500
rosa_wichuraiana	Rw3G023400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	703
AccII	CGCG	2 cut(s)	360, 362
AciI	CCGC	5 cut(s)	221, 260, 281, 463, 703
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	442
AfaI	GTAC	1 cut(s)	775
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	5 cut(s)	113, 347, 413, 460, 645
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	5 cut(s)	173, 239, 245, 257, 434
AluI	AGCT	5 cut(s)	173, 239, 245, 257, 434
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	805
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	427, 684
ApeKI	GCWGC	8 cut(s)	227, 236, 245, 248, 257, 332, 606, 609
ApoI	RAATTY	1 cut(s)	342
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	3 cut(s)	276, 362, 364
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	8 cut(s)	232, 235, 239, 244, 248, 319, 618, 621
BccI	CCATC	3 cut(s)	87, 310, 478
BciT130I	CCWGG	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	1 cut(s)	805
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	174, 240
BisI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 607, 610
BlsI	GCNGC	9 cut(s)	229, 238, 247, 250, 259, 262, 334, 608, 611
BmcAI	AGTACT	1 cut(s)	775
Bme1390I	CCNGG	2 cut(s)	373, 731
BmrFI	CCNGG	2 cut(s)	373, 731
BmsI	GCATC	6 cut(s)	158, 373, 519, 521, 562, 649
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	731
BsaHI	GRCGYC	1 cut(s)	442
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	405, 781
Bse3DI	GCAATG	2 cut(s)	380, 541
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	3 cut(s)	586, 634, 711
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	2 cut(s)	380, 541
BseMII	CTCAG	3 cut(s)	255, 571, 800
BseNI	ACTGG	2 cut(s)	405, 781
BsePI	GCGCGC	1 cut(s)	360
BseXI	GCAGC	8 cut(s)	232, 235, 239, 244, 248, 319, 618, 621
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	2 cut(s)	360, 362
BshFI	GGCC	2 cut(s)	429, 686
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	730
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	805
BsnI	GGCC	2 cut(s)	429, 686
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	284
BspACI	CCGC	5 cut(s)	221, 260, 281, 463, 703
BspANI	GGCC	2 cut(s)	429, 686
BspCNI	CTCAG	3 cut(s)	256, 570, 801
BspFNI	CGCG	2 cut(s)	360, 362
BspPI	GGATC	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	703
BsrDI	GCAATG	2 cut(s)	380, 541
BsrI	ACTGG	2 cut(s)	405, 781
BssECI	CCNNGG	1 cut(s)	231
BssHII	GCGCGC	1 cut(s)	360
BssMI	GATC	1 cut(s)	284
BssNI	GRCGYC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	635
Bst6I	CTCTTC	3 cut(s)	29, 174, 753
BstACI	GRCGYC	1 cut(s)	442
BstC8I	GCNNGC	2 cut(s)	362, 387
BstDEI	CTNAG	4 cut(s)	264, 557, 671, 809
BstF5I	GGATG	3 cut(s)	586, 634, 711
BstFNI	CGCG	2 cut(s)	360, 362
BstHHI	GCGC	3 cut(s)	276, 362, 364
BstKTI	GATC	1 cut(s)	287
BstMAI	GTCTC	1 cut(s)	805
BstMBI	GATC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	2 cut(s)	197, 565
BstSCI	CCNGG	2 cut(s)	371, 729
BstSFI	CTRYAG	2 cut(s)	174, 240
BstUI	CGCG	2 cut(s)	360, 362
BstV1I	GCAGC	8 cut(s)	232, 235, 239, 244, 248, 319, 618, 621
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	429, 686
BtsCI	GGATG	3 cut(s)	586, 634, 711
BtsIMutI	CAGTG	1 cut(s)	840
Cac8I	GCNNGC	2 cut(s)	362, 387
CfoI	GCGC	3 cut(s)	276, 362, 364
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	774
CviAII	CATG	2 cut(s)	194, 562
CviQI	GTAC	1 cut(s)	774
DdeI	CTNAG	4 cut(s)	264, 557, 671, 809
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	427
Eam1104I	CTCTTC	3 cut(s)	29, 174, 753
EarI	CTCTTC	3 cut(s)	29, 174, 753
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	197, 565
FaiI	YATR	6 cut(s)	195, 419, 500, 563, 604, 667
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	2 cut(s)	193, 561
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 607, 610
FokI	GGATG	3 cut(s)	593, 641, 718
Fsp4HI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 607, 610
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	3 cut(s)	275, 361, 363
GluI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 607, 610
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	429, 686
HapII	CCGG	1 cut(s)	730
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	3 cut(s)	276, 362, 364
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	2 cut(s)	197, 565
Hin6I	GCGC	3 cut(s)	274, 360, 362
HinP1I	GCGC	3 cut(s)	274, 360, 362
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HinfI	GANTC	3 cut(s)	53, 690, 761
HpaII	CCGG	1 cut(s)	730
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	3 cut(s)	154, 530, 618
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	3 cut(s)	99, 138, 833
HpyCH4III	ACNGT	1 cut(s)	635
HpyCH4V	TGCA	7 cut(s)	90, 197, 209, 227, 534, 606, 662
HpyF3I	CTNAG	4 cut(s)	264, 557, 671, 809
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	2 cut(s)	197, 565
HspAI	GCGC	3 cut(s)	274, 360, 362
Kzo9I	GATC	1 cut(s)	284
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	507
Lsp1109I	GCAGC	8 cut(s)	232, 235, 239, 244, 248, 319, 618, 621
LweI	GCATC	6 cut(s)	158, 373, 519, 521, 562, 649
MaeI	CTAG	1 cut(s)	278
MalI	GATC	1 cut(s)	286
MbiI	CCGCTC	1 cut(s)	703
MboI	GATC	1 cut(s)	284
MboII	GAAGA	5 cut(s)	46, 191, 279, 721, 770
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	3 cut(s)	342, 597, 639
MlyI	GAGTC	1 cut(s)	770
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	7 cut(s)	30, 259, 389, 432, 487, 643, 676
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	2 cut(s)	221, 239
MspI	CCGG	1 cut(s)	730
MspR9I	CCNGG	2 cut(s)	373, 731
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	2 cut(s)	360, 362
NciI	CCSGG	1 cut(s)	731
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	197, 565
NmeAIII	GCCGAG	1 cut(s)	455
NsiI	ATGCAT	1 cut(s)	199
NspI	RCATGY	2 cut(s)	197, 565
PauI	GCGCGC	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	53, 690
PfoI	TCCNGGA	1 cut(s)	729
PkrI	GCNGC	9 cut(s)	229, 238, 247, 250, 259, 262, 334, 608, 611
PleI	GAGTC	1 cut(s)	769
PpsI	GAGTC	1 cut(s)	769
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	284
PteI	GCGCGC	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	775
RsaNI	GTAC	1 cut(s)	774
RseI	CAYNNNNRTG	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	9 cut(s)	228, 237, 246, 249, 258, 261, 333, 607, 610
Sau3AI	GATC	1 cut(s)	284
ScaI	AGTACT	1 cut(s)	775
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	2 cut(s)	373, 731
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	9 cut(s)	175, 241, 247, 259, 270, 436, 498, 626, 844
SfaNI	GCATC	6 cut(s)	158, 373, 519, 521, 562, 649
SfcI	CTRYAG	2 cut(s)	174, 240
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	3 cut(s)	342, 597, 639
SsiI	CCGC	5 cut(s)	221, 260, 281, 463, 703
SspI	AATATT	1 cut(s)	830
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	371, 729
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	635
TaqI	TCGA	1 cut(s)	844
TasI	AATT	3 cut(s)	342, 597, 639
TatI	WGTACW	1 cut(s)	773
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	53, 690
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	1 cut(s)	840
TseI	GCWGC	8 cut(s)	227, 236, 245, 248, 257, 332, 606, 609
TspDTI	ATGAA	3 cut(s)	515, 722, 840
TspRI	CASTG	1 cut(s)	840
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	2 cut(s)	197, 565
XspI	CTAG	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	775
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.