AT5G03960

IQ-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012790
Physical Location & Seq
Reverse (-)
1068158 .. 1070164
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03960.1

Sequence Viewer

Length: 1212 bp
ATGGCGAAGAGGAGGTCGTGGTTCGGTTGGATGAAAAGACTATTCATCTGCGAGGCCAAAGCAAGAGCAGAGAAGCCAAGGAGATTGAGATGGGTGTTTAAAAGGCTGAAGCTGAGACCGCAGCTTGCCACTTGTGGGCAAGAGACAAGGACTTTGAACGAAGCAACACAGGATCAGAGGAAACATGCAATGAATGTAGCCATTGCCACGGCTGCAGCAGCTGAGGCAGCGGTTGCAGCCGCCAAGGCAGCTGCTGAGGTTGTCCGGATGGCGGGAAACGCCTTCACATCACAACATTTTGTCAAGAAGCTCGCTCCCAATGTGGCTGCTATCAAGATTCAGAGTGCATTCAGGGCTTCTCTGGCCAGGAAAGCGTTGCGGGCGCTTAAGGCACTTGTAAGGCTTCAAGCAATTGTGCGTGGCCGAGCTGTTAGGCGAAAGGTTTCTGCTTTATTGAAGTCTTCACACTCCAACAAAGCTTCAACATCAAACATCATCCAGAGACAAACAGAGAGAAAGCATTGGTCCAATACCAAATCTGAGATCAAAGAGGAGCTTCAGGTATCGAACCATTCGCTGTGTAACTCAAAGGTGAAGTGCAATGGTTGGGACAGTAGTGCTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAAGCAAGAAGGTGTGATCAAGCGCGATCGTATGTTGAAATACTCCCGGTCTCAACGGGAGAGAAGAAGTCCTCATATGCTTGTGGAGTCACTGTACGCTAAGGATATGGGGATGAGAAGCTGTCGGCTGGAACATTGGGGTGAATCCAAGTCTGCAAAATCCATCAACTCATTTCTCATTCCAAGTGAAATGCTTGTCCCTACAAAAGTAAAGCTTAGATCTTTGCAGAGACAAGACTCTGGTGATGGACAAGACTCTCCATTTTCTTTCCCAAGGAGATCTTTCAGCCGTTTGGAGCAGAGTATATTGGAAGACGAGAGCTGGTTTCAAAGATCCAATGGTTTCCAGCCGTACATGAGTGTGACAGAGTCTGCAAGGGAAAAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGATCATGGATTCTTTGTTTGATAACTACAAGAAGGATGGGGATAAAGTCTCTCTCTGGTCTACTTTTGTCTGCGAAAATAGTAAGATCAACAACGCTAAGAAGTCGTCTCTGACCACATATCAACATAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

403

Amino Acids

46.04

Weight (kDa)

10.56

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76705 AT5G03960 AT5G03960 AT5G03960
fragaria_vesca FvH4_6g24720
malus_domestica MD14G1079600.v1.1
prunus_persica Prupe.7G050600_v2.0.a1
pyrus_communis pycom12g07200 pycom12g07210
rosa_chinensis RchiOBHm_Chr3g0484271
rosa_laevigata RLG00000023235
rosa_rugosa Rorug03G0210500 Rorug03G0210500
rosa_samantha Rh3AG259500 Rh3BG296100 Rh3CG293600 Rh3DG289500
rosa_wichuraiana Rw3G023400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1136
AccII CGCG 1 cut(s) 681
AccIII TCCGGA 1 cut(s) 264
AciI CCGC 5 cut(s) 119, 230, 240, 272, 379
AclWI GGATC 3 cut(s) 180, 984, 1085
AcoI YGGCCR 2 cut(s) 363, 421
AcuI CTGAAG 2 cut(s) 128, 542
AfaI GTAC 2 cut(s) 752, 1010
AfiI CCNNNNNNNGG 2 cut(s) 135, 271
AflII CTTAAG 1 cut(s) 386
AflIII ACRYGT 1 cut(s) 1069
AgsI TTSAA 6 cut(s) 157, 407, 457, 483, 694, 986
AjnI CCWGG 1 cut(s) 365
Alw21I GWGCWC 2 cut(s) 622, 1058
Alw26I GTCTC 7 cut(s) 109, 137, 496, 711, 880, 1129, 1188
AlwI GGATC 3 cut(s) 180, 984, 1085
AlwNI CAGNNNCTG 3 cut(s) 221, 254, 1028
Aor13HI TCCGGA 1 cut(s) 264
AoxI GGCC 3 cut(s) 54, 363, 421
ApeKI GCWGC 9 cut(s) 121, 212, 215, 218, 227, 236, 248, 251, 326
ArsI GACNNNNNNTTYG 3 cut(s) 31, 136, 168
Asp700I GAANNNNTTC 1 cut(s) 442
AspLEI GCGC 2 cut(s) 385, 681
AspS9I GGNCC 1 cut(s) 525
AsuC2I CCSGG 1 cut(s) 703
AsuHPI GGTGA 3 cut(s) 604, 809, 911
AvaII GGWCC 1 cut(s) 525
BalI TGGCCA 1 cut(s) 365
BbsI GAAGAC 2 cut(s) 453, 975
Bbv12I GWGCWC 2 cut(s) 622, 1058
BbvCI CCTCAGC 2 cut(s) 222, 255
BbvI GCAGC 9 cut(s) 133, 199, 227, 230, 238, 239, 248, 260, 313
BccI CCATC 5 cut(s) 84, 262, 827, 896, 1106
BceAI ACGGC 3 cut(s) 225, 930, 991
BciT130I CCWGG 1 cut(s) 367
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 1 cut(s) 703
BcoDI GTCTC 7 cut(s) 109, 137, 496, 711, 880, 1129, 1188
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 386
BfrI CTTAAG 1 cut(s) 386
BglI GCCNNNNNGGC 1 cut(s) 245
BglII AGATCT 2 cut(s) 875, 935
Bme1390I CCNGG 2 cut(s) 367, 703
Bme18I GGWCC 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 525
BmrFI CCNGG 2 cut(s) 367, 703
BpiI GAAGAC 2 cut(s) 453, 975
Bpu10I CCTNAGC 3 cut(s) 222, 255, 756
BpuMI CCSGG 1 cut(s) 703
BsaI GGTCTC 2 cut(s) 109, 711
BsaJI CCNNGG 5 cut(s) 77, 207, 243, 929, 1061
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 734, 764
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 271
Bse3DI GCAATG 3 cut(s) 195, 201, 607
BseAI TCCGGA 1 cut(s) 264
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 5 cut(s) 77, 207, 243, 929, 1061
BseGI GGATG 5 cut(s) 36, 273, 495, 774, 1117
BseLI CCNNNNNNNGG 2 cut(s) 135, 271
BseMI GCAATG 3 cut(s) 195, 201, 607
BseMII CTCAG 5 cut(s) 104, 213, 246, 531, 1043
BseRI GAGGAG 2 cut(s) 25, 566
BseXI GCAGC 9 cut(s) 133, 199, 227, 230, 238, 239, 248, 260, 313
Bsh1236I CGCG 1 cut(s) 681
Bsh1285I CGRYCG 1 cut(s) 685
BshFI GGCC 3 cut(s) 56, 365, 423
BsiEI CGRYCG 1 cut(s) 685
BsiHKAI GWGCWC 2 cut(s) 622, 1058
BsiSI CCGG 2 cut(s) 265, 703
BslFI GGGAC 2 cut(s) 623, 839
BslI CCNNNNNNNGG 2 cut(s) 135, 271
BsmAI GTCTC 7 cut(s) 109, 137, 496, 711, 880, 1129, 1188
BsmBI CGTCTC 1 cut(s) 1188
BsmFI GGGAC 2 cut(s) 623, 839
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 3 cut(s) 56, 365, 423
Bso31I GGTCTC 2 cut(s) 109, 711
Bsp1286I GDGCHC 2 cut(s) 622, 1058
Bsp13I TCCGGA 1 cut(s) 264
BspACI CCGC 5 cut(s) 119, 230, 240, 272, 379
BspANI GGCC 3 cut(s) 56, 365, 423
BspCNI CTCAG 5 cut(s) 105, 214, 247, 532, 1044
BspEI TCCGGA 1 cut(s) 264
BspFNI CGCG 1 cut(s) 681
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 3 cut(s) 180, 984, 1085
BspTI CTTAAG 1 cut(s) 386
BspTNI GGTCTC 2 cut(s) 109, 711
BsrDI GCAATG 3 cut(s) 195, 201, 607
BssECI CCNNGG 5 cut(s) 77, 207, 243, 929, 1061
BssT1I CCWWGG 4 cut(s) 77, 243, 929, 1061
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 2 cut(s) 614, 750
Bst6I CTCTTC 1 cut(s) 2
BstAFI CTTAAG 1 cut(s) 386
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 3 cut(s) 126, 312, 381
BstDEI CTNAG 8 cut(s) 113, 222, 255, 540, 756, 872, 1052, 1173
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 5 cut(s) 36, 273, 495, 774, 1117
BstFNI CGCG 1 cut(s) 681
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 2 cut(s) 385, 681
BstMAI GTCTC 7 cut(s) 109, 137, 496, 711, 880, 1129, 1188
BstMCI CGRYCG 1 cut(s) 685
BstNI CCWGG 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 365, 701
BstSFI CTRYAG 1 cut(s) 213
BstUI CGCG 1 cut(s) 681
BstV1I GCAGC 9 cut(s) 133, 199, 227, 230, 238, 239, 248, 260, 313
BstV2I GAAGAC 2 cut(s) 453, 975
BstX2I RGATCY 3 cut(s) 875, 935, 989
BstYI RGATCY 3 cut(s) 875, 935, 989
BsuRI GGCC 3 cut(s) 56, 365, 423
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 5 cut(s) 36, 273, 495, 774, 1117
BtsIMutI CAGTG 2 cut(s) 746, 1049
Cac8I GCNNGC 3 cut(s) 126, 312, 381
CaiI CAGNNNCTG 3 cut(s) 221, 254, 1028
CfoI GCGC 2 cut(s) 385, 681
Cfr13I GGNCC 1 cut(s) 525
Csp6I GTAC 2 cut(s) 751, 1009
CviAII CATG 3 cut(s) 185, 1012, 1081
CviQI GTAC 2 cut(s) 751, 1009
DdeI CTNAG 8 cut(s) 113, 222, 255, 540, 756, 872, 1052, 1173
DraI TTTAAA 1 cut(s) 100
EaeI YGGCCR 2 cut(s) 363, 421
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco130I CCWWGG 4 cut(s) 77, 243, 929, 1061
Eco31I GGTCTC 2 cut(s) 109, 711
Eco47I GGWCC 1 cut(s) 525
Eco57I CTGAAG 2 cut(s) 128, 542
EcoRII CCWGG 1 cut(s) 365
EcoT14I CCWWGG 4 cut(s) 77, 243, 929, 1061
ErhI CCWWGG 4 cut(s) 77, 243, 929, 1061
Esp3I CGTCTC 1 cut(s) 1188
FaeI CATG 3 cut(s) 188, 1015, 1084
FalI AAGNNNNNCTT 6 cut(s) 540, 572, 855, 887, 922, 954
FaqI GGGAC 2 cut(s) 623, 839
FatI CATG 3 cut(s) 184, 1011, 1080
FauI CCCGC 2 cut(s) 265, 372
FauNDI CATATG 2 cut(s) 647, 732
FbaI TGATCA 1 cut(s) 672
FblI GTMKAC 1 cut(s) 1136
FokI GGATG 5 cut(s) 43, 280, 482, 781, 1124
GlaI GCGC 2 cut(s) 384, 680
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 3 cut(s) 56, 365, 423
HapII CCGG 2 cut(s) 265, 703
HhaI GCGC 2 cut(s) 385, 681
Hin1II CATG 3 cut(s) 188, 1015, 1084
Hin6I GCGC 2 cut(s) 383, 679
HinP1I GCGC 2 cut(s) 383, 679
HindIII AAGCTT 2 cut(s) 477, 869
HinfI GANTC 7 cut(s) 337, 743, 800, 893, 911, 1025, 1085
HpaII CCGG 2 cut(s) 265, 703
HphI GGTGA 3 cut(s) 604, 809, 911
Hpy166II GTNNAC 1 cut(s) 1137
Hpy188I TCNGA 4 cut(s) 177, 342, 541, 1188
Hpy188III TCNNGA 5 cut(s) 265, 304, 334, 499, 625
Hpy8I GTNNAC 1 cut(s) 1137
HpyAV CCTTC 4 cut(s) 292, 622, 659, 1102
HpyCH4III ACNGT 2 cut(s) 614, 750
HpyCH4IV ACGT 1 cut(s) 1069
HpyCH4V TGCA 8 cut(s) 188, 215, 236, 347, 600, 812, 883, 1031
HpyF3I CTNAG 8 cut(s) 113, 222, 255, 540, 756, 872, 1052, 1173
HpySE526I ACGT 1 cut(s) 1069
Hsp92II CATG 3 cut(s) 188, 1015, 1084
HspAI GCGC 2 cut(s) 383, 679
Kpn2I TCCGGA 1 cut(s) 264
Ksp22I TGATCA 1 cut(s) 672
LmnI GCTCC 3 cut(s) 319, 553, 952
Lsp1109I GCAGC 9 cut(s) 133, 199, 227, 230, 238, 239, 248, 260, 313
MaeII ACGT 1 cut(s) 1069
MaeIII GTNAC 3 cut(s) 581, 744, 1018
MboII GAAGA 5 cut(s) 19, 453, 644, 732, 980
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 3 cut(s) 875, 935, 989
MhlI GDGCHC 2 cut(s) 622, 1058
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 2 cut(s) 411, 1204
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 4 cut(s) 752, 887, 905, 1034
MmeI TCCRAC 2 cut(s) 8, 495
MnlI CCTC 9 cut(s) 3, 6, 46, 171, 217, 250, 544, 648, 738
Mox20I TGGCCA 1 cut(s) 365
MroI TCCGGA 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 442
MscI TGGCCA 1 cut(s) 365
MseI TTAA 2 cut(s) 99, 387
MslI CAYNNNNRTG 2 cut(s) 795, 1016
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 3 cut(s) 221, 230, 251
MspCI CTTAAG 1 cut(s) 386
MspI CCGG 2 cut(s) 265, 703
MspR9I CCNGG 2 cut(s) 367, 703
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 1 cut(s) 367
MvnI CGCG 1 cut(s) 681
NciI CCSGG 1 cut(s) 703
NdeI CATATG 2 cut(s) 647, 732
NlaIII CATG 3 cut(s) 188, 1015, 1084
NmeAIII GCCGAG 1 cut(s) 449
NmuCI GTSAC 2 cut(s) 744, 1018
NspI RCATGY 1 cut(s) 188
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 337, 800, 1085
PflFI GACNNNGTC 1 cut(s) 1024
Ple19I CGATCG 1 cut(s) 685
PleI GAGTC 4 cut(s) 751, 887, 905, 1033
PpsI GAGTC 4 cut(s) 751, 887, 905, 1033
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspPI GGNCC 1 cut(s) 525
PstI CTGCAG 1 cut(s) 217
PstNI CAGNNNCTG 3 cut(s) 221, 254, 1028
PsuI RGATCY 3 cut(s) 875, 935, 989
PsyI GACNNNGTC 1 cut(s) 1024
PvuI CGATCG 1 cut(s) 685
PvuII CAGCTG 2 cut(s) 221, 251
RsaI GTAC 2 cut(s) 752, 1010
RsaNI GTAC 2 cut(s) 751, 1009
RseI CAYNNNNRTG 2 cut(s) 795, 1016
SaqAI TTAA 2 cut(s) 99, 387
Sau96I GGNCC 1 cut(s) 525
SchI GAGTC 4 cut(s) 752, 887, 905, 1034
ScrFI CCNGG 2 cut(s) 367, 703
SduI GDGCHC 2 cut(s) 622, 1058
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 525
SmiMI CAYNNNNRTG 2 cut(s) 795, 1016
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 2 cut(s) 411, 1204
SsiI CCGC 5 cut(s) 119, 230, 240, 272, 379
StyD4I CCNGG 2 cut(s) 365, 701
StyI CCWWGG 4 cut(s) 77, 243, 929, 1061
TaaI ACNGT 2 cut(s) 614, 750
TaiI ACGT 1 cut(s) 1072
TaqI TCGA 1 cut(s) 566
TasI AATT 2 cut(s) 411, 1204
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 3 cut(s) 337, 800, 1085
Tru1I TTAA 2 cut(s) 99, 387
Tru9I TTAA 2 cut(s) 99, 387
TscAI CASTG 2 cut(s) 753, 1056
TseFI GTSAC 2 cut(s) 744, 1018
TseI GCWGC 9 cut(s) 121, 212, 215, 218, 227, 236, 248, 251, 326
Tsp45I GTSAC 2 cut(s) 744, 1018
TspDTI ATGAA 3 cut(s) 34, 47, 206
TspRI CASTG 2 cut(s) 753, 1056
Tth111I GACNNNGTC 1 cut(s) 1024
Vha464I CTTAAG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 525
XceI RCATGY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 1136
XmnI GAANNNNTTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.