AT1G76880
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
28865314 .. 28868225
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76880.1

Sequence Viewer

Length: 1812 bp
ATGATGCAACTGGGTGGTGGTACTCCGACCACTACAGCGGCGGCTACAACCGTCACAACTGCTACAGCACCACCGCCACAATCAAACAACAACGATTCAGCGGCAACAGAAGCAGCGGCAGCAGCGGTTGGGGCGTTTGAGGTGTCGGAAGAGATGCACGACCGTGGGTTTGGAGGAAATCGTTGGCCGCGGCAGGAAACGCTAGCGTTGTTGAAAATACGATCTGACATGGGAATAGCGTTTCGAGACGCTAGCGTTAAAGGTCCCTTATGGGAAGAGGTTTCTAGGAAAATGGCGGAGCATGGTTACATAAGAAACGCAAAGAAATGCAAAGAGAAATTCGAGAACGTTTACAAATACCACAAACGAACCAAAGAAGGTCGTACCGGAAAATCCGAAGGCAAAACTTATCGCTTCTTTGATCAATTAGAAGCTCTCGAGTCTCAATCTACAACCTCACTCCACCATCATCAACAACAAACGCCTCTTCGACCACAGCAAAACAACAACAACAACAACAACAACAACAACAACAGCTCCATATTTTCAACTCCTCCTCCGGTAACGACAGTTATGCCGACGCTTCCTTCTTCATCAATTCCTCCGTATACTCAGCAGATTAATGTACCTTCGTTTCCAAACATCTCCGGTGATTTTCTATCGGATAATTCTACATCGTCTTCGTCTTCTTATTCGACTTCTTCTGACATGGAGATGGGTGGTGGAACTGCGACTACAAGGAAGAAAAGGAAGAGGAAATGGAAGGTGTTTTTCGAGCGGTTGATGAAACAAGTAGTTGATAAACAGGAAGAGCTTCAACGCAAATTCTTGGAAGCTGTTGAAAAGCGAGAACACGAGAGATTGGTTAGAGAAGAGTCTTGGAGAGTTCAAGAGATTGCCAGAATCAACCGCGAGCACGAGATCTTAGCTCAAGAACGCTCTATGTCCGCTGCAAAAGACGCTGCTGTTATGGCCTTTCTTCAAAAACTGTCAGAGAAACAACCGAATCAGCCACAACCGCAGCCTCAGCCGCAACAAGTTCGACCATCAATGCAGCTTAATAACAACAATCAGCAGCAACCGCCTCAACGGTCTCCTCCACCGCAACCTCCTGCTCCGCTTCCGCAGCCAATTCAAGCGGTTGTGTCGACGTTAGACACAACGAAAACGGACAATGGTGGTGATCAGAATATGACTCCTGCAGCTTCAGCGAGCTCGTCGCGGTGGCCGAAAGTGGAGATAGAAGCATTGATAAAGCTGAGGACGAATCTTGATTCGAAATATCAAGAAAACGGACCAAAAGGACCATTGTGGGAAGAGATATCAGCGGGAATGAGAAGGTTAGGATTCAACAGGAACTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAGAAAGTCAAAGAGAGCAACAAGAAACGTCCCGAAGATTCCAAGACTTGCCCTTACTTTCACCAGCTTGATGCTTTATATAGAGAGAGGAACAAATTCCACAGCAACAACAACATTGCAGCTTCTTCTTCATCTTCCGGTCTTGTTAAACCGGATAATTCTGTTCCCTTGATGGTCCAACCAGAGCAGCAATGGCCTCCGGCTGTAACGACTGCGACAACTACTCCCGCAGCGGCTCAGCCTGATCAGCAATCTCAGCCGTCGGAGCAGAACTTTGATGATGAAGAAGGTACAGATGAAGAGTACGACGATGAAGATGAGGAAGAGGAGAATGAAGAAGAGGAAGGAGGTGAGTTCGAGCTTGTGCCTAGCAATAACAACAACAACAAGACGACGAATAATCTGTAA

Protein Analysis

603

Amino Acids

67.88

Weight (kDa)

6.3

Isoelectric Point (pI)

68.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 60 - 146 1.9e-21 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 407 - 494 5.1e-25 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011818)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 778
AccI GTMKAC 2 cut(s) 608, 1148
AccII CGCG 3 cut(s) 190, 912, 1222
AclI AACGTT 1 cut(s) 348
AcoI YGGCCR 2 cut(s) 185, 1226
AcsI RAATTY 3 cut(s) 338, 824, 1499
AcuI CTGAAG 1 cut(s) 1191
AfaI GTAC 5 cut(s) 22, 385, 627, 1696, 1709
AgsI TTSAA 9 cut(s) 214, 549, 818, 842, 890, 983, 1136, 1351, 1405
AleI CACNNNNGTG 1 cut(s) 162
Alw21I GWGCWC 2 cut(s) 918, 1217
Alw26I GTCTC 3 cut(s) 240, 447, 1098
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 4 cut(s) 185, 972, 1226, 1598
ApoI RAATTY 3 cut(s) 338, 824, 1499
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AseI ATTAAT 1 cut(s) 621
Asp700I GAANNNNTTC 2 cut(s) 813, 1499
AspS9I GGNCC 4 cut(s) 263, 1295, 1304, 1579
AsuHPI GGTGA 4 cut(s) 662, 1193, 1457, 1766
AsuII TTCGAA 1 cut(s) 1277
AsuNHI GCTAGC 2 cut(s) 202, 251
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 4 cut(s) 263, 1295, 1304, 1579
BanII GRGCYC 1 cut(s) 1217
BauI CACGAG 2 cut(s) 854, 917
BbsI GAAGAC 2 cut(s) 672, 678
Bbv12I GWGCWC 2 cut(s) 918, 1217
BbvCI CCTCAGC 2 cut(s) 1026, 1259
BccI CCATC 4 cut(s) 474, 709, 1054, 1570
BceAI ACGGC 1 cut(s) 1648
BcgI CGANNNNNNTGC 4 cut(s) 556, 590, 1022, 1056
BclI TGATCA 3 cut(s) 421, 1183, 1648
BcoDI GTCTC 3 cut(s) 240, 447, 1098
BfaI CTAG 4 cut(s) 203, 252, 285, 1773
BfmI CTRYAG 3 cut(s) 33, 63, 1200
BglII AGATCT 1 cut(s) 921
BlpI GCTNAGC 1 cut(s) 1641
Bme18I GGWCC 4 cut(s) 263, 1295, 1304, 1579
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 4 cut(s) 263, 1295, 1304, 1579
BmiI GGNNCC 1 cut(s) 265
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 3 cut(s) 144, 1358, 1465
BmtI GCTAGC 2 cut(s) 206, 255
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 672, 678
Bpu10I CCTNAGC 2 cut(s) 1026, 1259
Bpu1102I GCTNAGC 1 cut(s) 1641
Bpu14I TTCGAA 1 cut(s) 1277
BpuEI CTTGAG 1 cut(s) 915
BsaI GGTCTC 1 cut(s) 1098
BsaJI CCNNGG 2 cut(s) 163, 188
BsaWI WCCGGW 5 cut(s) 386, 559, 647, 1541, 1555
BsaXI ACNNNNNCTCC 6 cut(s) 521, 541, 551, 571, 1612, 1642
Bse1I ACTGG 1 cut(s) 15
Bse3DI GCAATG 2 cut(s) 1518, 1601
BseDI CCNNGG 2 cut(s) 163, 188
BseMI GCAATG 2 cut(s) 1518, 1601
BseMII CTCAG 5 cut(s) 626, 1040, 1250, 1655, 1673
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 4 cut(s) 543, 546, 1086, 1745
Bsh1236I CGCG 3 cut(s) 190, 912, 1222
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 4 cut(s) 187, 974, 1228, 1600
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 918, 1217
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 6 cut(s) 387, 560, 648, 1542, 1556, 1604
BslFI GGGAC 2 cut(s) 249, 1419
BsmAI GTCTC 3 cut(s) 240, 447, 1098
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 2 cut(s) 249, 1419
BsnI GGCC 4 cut(s) 187, 974, 1228, 1600
Bso31I GGTCTC 1 cut(s) 1098
BsoBI CYCGRG 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 1277
Bsp1286I GDGCHC 2 cut(s) 918, 1217
Bsp143I GATC 5 cut(s) 221, 421, 921, 1183, 1648
Bsp1720I GCTNAGC 1 cut(s) 1641
BspANI GGCC 4 cut(s) 187, 974, 1228, 1600
BspCNI CTCAG 5 cut(s) 625, 1039, 1251, 1654, 1672
BspFNI CGCG 3 cut(s) 190, 912, 1222
BspLI GGNNCC 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 1204
BspOI GCTAGC 2 cut(s) 206, 255
BspQI GCTCTTC 1 cut(s) 804
BspT104I TTCGAA 1 cut(s) 1277
BspTNI GGTCTC 1 cut(s) 1098
BsrBI CCGCTC 1 cut(s) 778
BsrDI GCAATG 2 cut(s) 1518, 1601
BsrI ACTGG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 163, 188
BssMI GATC 5 cut(s) 221, 421, 921, 1183, 1648
BssNAI GTATAC 1 cut(s) 609
BssSI CACGAG 2 cut(s) 854, 917
Bst1107I GTATAC 1 cut(s) 609
Bst2BI CACGAG 2 cut(s) 854, 917
Bst4CI ACNGT 5 cut(s) 52, 164, 571, 990, 1092
BstBI TTCGAA 1 cut(s) 1277
BstC8I GCNNGC 4 cut(s) 204, 253, 914, 1213
BstDEI CTNAG 6 cut(s) 612, 925, 1026, 1259, 1641, 1659
BstDSI CCRYGG 2 cut(s) 163, 188
BstFNI CGCG 3 cut(s) 190, 912, 1222
BstKTI GATC 5 cut(s) 224, 424, 924, 1186, 1651
BstMAI GTCTC 3 cut(s) 240, 447, 1098
BstMBI GATC 5 cut(s) 221, 421, 921, 1183, 1648
BstMCI CGRYCG 1 cut(s) 163
BstSFI CTRYAG 3 cut(s) 33, 63, 1200
BstUI CGCG 3 cut(s) 190, 912, 1222
BstV2I GAAGAC 2 cut(s) 672, 678
BstX2I RGATCY 1 cut(s) 921
BstYI RGATCY 1 cut(s) 921
BstZ17I GTATAC 1 cut(s) 609
BsuRI GGCC 4 cut(s) 187, 974, 1228, 1600
BtgI CCRYGG 2 cut(s) 163, 188
Cac8I GCNNGC 4 cut(s) 204, 253, 914, 1213
Cfr13I GGNCC 4 cut(s) 263, 1295, 1304, 1579
Cfr42I CCGCGG 1 cut(s) 191
CseI GACGC 3 cut(s) 257, 589, 968
Csp6I GTAC 5 cut(s) 21, 384, 626, 1695, 1708
CviAII CATG 3 cut(s) 229, 302, 709
CviQI GTAC 5 cut(s) 21, 384, 626, 1695, 1708
DdeI CTNAG 6 cut(s) 612, 925, 1026, 1259, 1641, 1659
DpnI GATC 5 cut(s) 223, 423, 923, 1185, 1650
DpnII GATC 5 cut(s) 221, 421, 921, 1183, 1648
EaeI YGGCCR 2 cut(s) 185, 1226
EciI GGCGGA 1 cut(s) 311
Ecl136II GAGCTC 1 cut(s) 1215
Eco24I GRGCYC 1 cut(s) 1217
Eco31I GGTCTC 1 cut(s) 1098
Eco32I GATATC 1 cut(s) 1323
Eco47I GGWCC 4 cut(s) 263, 1295, 1304, 1579
Eco53kI GAGCTC 1 cut(s) 1215
Eco57I CTGAAG 1 cut(s) 1191
Eco88I CYCGRG 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 1215
EcoO109I RGGNCCY 1 cut(s) 263
EcoRV GATATC 1 cut(s) 1323
EcoT38I GRGCYC 1 cut(s) 1217
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 3 cut(s) 232, 305, 712
FaqI GGGAC 2 cut(s) 249, 1419
FatI CATG 3 cut(s) 228, 301, 708
FauI CCCGC 2 cut(s) 1321, 1639
FbaI TGATCA 3 cut(s) 421, 1183, 1648
FblI GTMKAC 2 cut(s) 608, 1148
FriOI GRGCYC 1 cut(s) 1217
FspBI CTAG 4 cut(s) 203, 252, 285, 1773
HaeIII GGCC 4 cut(s) 187, 974, 1228, 1600
HapII CCGG 6 cut(s) 387, 560, 648, 1542, 1556, 1604
HgaI GACGC 3 cut(s) 257, 589, 968
Hin1II CATG 3 cut(s) 232, 305, 712
HincII GTYRAC 1 cut(s) 1149
HindII GTYRAC 1 cut(s) 1149
HpaII CCGG 6 cut(s) 387, 560, 648, 1542, 1556, 1604
HphI GGTGA 4 cut(s) 662, 1193, 1457, 1766
Hpy166II GTNNAC 3 cut(s) 352, 609, 1149
Hpy188I TCNGA 9 cut(s) 27, 148, 226, 397, 664, 706, 994, 1188, 1669
Hpy188III TCNNGA 9 cut(s) 245, 343, 437, 890, 932, 1271, 1286, 1405, 1436
Hpy8I GTNNAC 3 cut(s) 352, 609, 1149
Hpy99I CGWCG 6 cut(s) 583, 1153, 1222, 1669, 1715, 1801
HpyAV CCTTC 8 cut(s) 371, 392, 597, 639, 757, 1332, 1685, 1742
HpyCH4III ACNGT 5 cut(s) 52, 164, 571, 990, 1092
HpyCH4IV ACGT 3 cut(s) 348, 1151, 1432
HpyCH4V TGCA 8 cut(s) 7, 157, 330, 953, 1054, 1202, 1371, 1523
HpyF3I CTNAG 6 cut(s) 612, 925, 1026, 1259, 1641, 1659
HpySE526I ACGT 3 cut(s) 348, 1151, 1432
Hsp92II CATG 3 cut(s) 232, 305, 712
Ksp22I TGATCA 3 cut(s) 421, 1183, 1648
KspI CCGCGG 1 cut(s) 191
Kzo9I GATC 5 cut(s) 221, 421, 921, 1183, 1648
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 4 cut(s) 298, 542, 1120, 1669
LweI GCATC 3 cut(s) 144, 1358, 1465
MaeI CTAG 4 cut(s) 203, 252, 285, 1773
MaeII ACGT 3 cut(s) 348, 1151, 1432
MaeIII GTNAC 4 cut(s) 52, 305, 562, 1609
MalI GATC 5 cut(s) 223, 423, 923, 1185, 1650
MbiI CCGCTC 1 cut(s) 778
MboI GATC 5 cut(s) 221, 421, 921, 1183, 1648
MflI RGATCY 1 cut(s) 921
MhlI GDGCHC 2 cut(s) 918, 1217
MluCI AATT 8 cut(s) 338, 425, 597, 667, 824, 1131, 1499, 1561
MlyI GAGTC 3 cut(s) 449, 884, 1189
MmeI TCCRAC 4 cut(s) 50, 126, 1606, 1647
MroXI GAANNNNTTC 2 cut(s) 813, 1499
MseI TTAA 4 cut(s) 258, 621, 1059, 1551
MslI CAYNNNNRTG 2 cut(s) 162, 713
MspA1I CMGCKG 8 cut(s) 38, 101, 116, 125, 190, 950, 1328, 1637
MspI CCGG 6 cut(s) 387, 560, 648, 1542, 1556, 1604
MvnI CGCG 3 cut(s) 190, 912, 1222
NdeII GATC 5 cut(s) 221, 421, 921, 1183, 1648
NheI GCTAGC 2 cut(s) 202, 251
NlaIII CATG 3 cut(s) 232, 305, 712
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 52
NspV TTCGAA 1 cut(s) 1277
OliI CACNNNNGTG 1 cut(s) 162
PaeR7I CTCGAG 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 804
PcsI WCGNNNNNNNCGW 1 cut(s) 1226
PdmI GAANNNNTTC 2 cut(s) 813, 1499
PfeI GAWTC 7 cut(s) 95, 903, 1006, 1267, 1274, 1347, 1442
PleI GAGTC 3 cut(s) 448, 883, 1189
PpsI GAGTC 3 cut(s) 448, 883, 1189
PpuMI RGGWCCY 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 1217
Psp1406I AACGTT 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 4 cut(s) 263, 1295, 1304, 1579
PspPPI RGGWCCY 1 cut(s) 263
PsrI GAACNNNNNNTAC 2 cut(s) 718, 750
PstI CTGCAG 1 cut(s) 1204
PsuI RGATCY 1 cut(s) 921
RsaI GTAC 5 cut(s) 22, 385, 627, 1696, 1709
RsaNI GTAC 5 cut(s) 21, 384, 626, 1695, 1708
RseI CAYNNNNRTG 2 cut(s) 162, 713
SacI GAGCTC 1 cut(s) 1217
SacII CCGCGG 1 cut(s) 191
SalI GTCGAC 1 cut(s) 1147
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 4 cut(s) 258, 621, 1059, 1551
Sau3AI GATC 5 cut(s) 221, 421, 921, 1183, 1648
Sau96I GGNCC 4 cut(s) 263, 1295, 1304, 1579
SchI GAGTC 3 cut(s) 449, 884, 1189
SduI GDGCHC 2 cut(s) 918, 1217
SfaNI GCATC 3 cut(s) 144, 1358, 1465
SfcI CTRYAG 3 cut(s) 33, 63, 1200
Sfr274I CTCGAG 1 cut(s) 437
Sfr303I CCGCGG 1 cut(s) 191
SfuI TTCGAA 1 cut(s) 1277
SgrBI CCGCGG 1 cut(s) 191
SinI GGWCC 4 cut(s) 263, 1295, 1304, 1579
SlaI CTCGAG 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 162, 713
SmlI CTYRAG 2 cut(s) 437, 930
SmoI CTYRAG 2 cut(s) 437, 930
Sse9I AATT 8 cut(s) 338, 425, 597, 667, 824, 1131, 1499, 1561
SspMI CTAG 4 cut(s) 203, 252, 285, 1773
SstI GAGCTC 1 cut(s) 1217
TaaI ACNGT 5 cut(s) 52, 164, 571, 990, 1092
TaiI ACGT 3 cut(s) 351, 1154, 1435
TasI AATT 8 cut(s) 338, 425, 597, 667, 824, 1131, 1499, 1561
TauI GCSGC 8 cut(s) 41, 44, 104, 119, 190, 193, 1033, 1640
TfiI GAWTC 7 cut(s) 95, 903, 1006, 1267, 1274, 1347, 1442
Tru1I TTAA 4 cut(s) 258, 621, 1059, 1551
Tru9I TTAA 4 cut(s) 258, 621, 1059, 1551
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 7 cut(s) 582, 800, 1524, 1701, 1716, 1731, 1752
TspGWI ACGGA 3 cut(s) 594, 1184, 1308
VpaK11BI GGWCC 4 cut(s) 263, 1295, 1304, 1579
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 3 cut(s) 338, 824, 1499
XcmI CCANNNNNNNNNTGG 1 cut(s) 1593
XhoI CTCGAG 1 cut(s) 437
XmiI GTMKAC 2 cut(s) 608, 1148
XmnI GAANNNNTTC 2 cut(s) 813, 1499
XspI CTAG 4 cut(s) 203, 252, 285, 1773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.