MD05G1024400.v1.1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011818
Physical Location & Seq
Forward (+)
3968918 .. 3972277
3360 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1024400.v1.1.491

Sequence Viewer

Length: 1998 bp
ATGCTGGGGGAATCTACTAGTGTCTTAGGGAGCTCCATCGGCCGCGATGCTGTGGCCACAGCTGTGGCAGCTCCCGAAGGTGGTGGCGGCAGCGGCAATGGGTCGAATAATAATTCAGGTGAAGAAACGTTCAGAGGTGGTCAAGAGGAATTGTTAGGAGGTGGCGAGAGGAGCTTCGGTGGCAATCGGTGGCCGCGCCAAGAGACTTTAGCTCTCTTGCAAATACGGTCTGACATGGACGTGGCGTTTCGTGATGCAAGTGTTAAGGGTCCTTTATGGGAAGAGGTTTCCAGCAAGCTAGCAGCGCTTGGCTATCATCGAAGCGCCAAGAAATGCAAGGAGAAGTTTGAGAACGTCTACAAGTACCACAGGAGAACCAAAGAAGGCCGCACCGGCAAGTCCGAAGGCAAGACTTATCGGTTTTTCGATCAGTTAAACGCCCTCGAAAATCAACCTCCGACTCCGGGCAGTACTACTACTCATCATCAACCTAAGCCTCATCAGTCTACAACGGCGGCAGCTGCGGCAACAATGACAACAATGGCAATGGCTAACCCTCCCCCAACCATTTCTCATCCCAATAGTAGTACTACTGTTCCATCGTCAGCTGCCCCGCACCCTACAATTCCTATTGTGTCCTCTCAAGGCATTGCAACACCAACACTTAATAACCTCACACTCCCCAGTTCATTCCCACCAACAAACCCTATAGTTCTTCCACCACCGCCACAACCTCCGCCGCCTCAACCAACAACAACAAACCCTACAAGCAATCTCAGTCATCATCATCAGCAGCAGCACACTGCATTTCCAACGTCTTTCCCAACCATACCCACTGACCTCCTTTCAAATTCCACCTCTTCCTCCACCTCGTCTGACGAGGAGTTGGAAGGGCGGGCGAAGAAGAAGAGGAAATGGAAGGACTTCTTCGAGAGACTAATGAAGGATGTGATCCAGAAGCAAGAGGATCTTCAGAAGAGATTCTTGGAGACCATCGAGAAACGTGAACAAGAAAGAATTGTAAGAGAAGAAGCTTGGAGAATGCAAGAGATGGCAAGAATCAATAGAGAGCGCGAGATTCTAGCTCAAGAACGATCAATCAAGGCAGCCAAAGATGCCGCGGTCATGTCATTCTTGCAAAAGGTATCCGAGCAGCAGCAAAACCAAAATCAAAACCAAAACCAAAGCACACCGAACCAGTCACAGCTACTACCGTTACAACCAGCACCACTTCCTCTTGCACCGCGGCAGCCTGCACCACCACCACAACCACAACCACAACAGAAGGTGACGAACTTTGACATTGTTCCGAAATCAAACAACAACGGGGAGAACGATAATTTGATGATGCCACCGAGCTCATCAAGATGGCCGAAAGTGGAGGTACAAGCGTTGATCAAGCTGAGAACCAGCCTTGATTCTAAGTACCAAGAGAATGGACCGAAAGGGCCGCTTTGGGAGGAAATCTCGGGAGGAATGAGGAAGCTCGGATACAATCGGAACGCAAAAAGATGCAAGGAGAAGTGGGAGAACATTAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGAGAAGGCCTGAGGATTCGAAGACATGTCCTTACTTTCACCTGCTAGATAGTTTGTATAGAGAGAGGAACAATTTTGATCAGAACAATGTCAATAGTACTAGTACTACTAATTCTTCGAGCCAATTCAAGCCCGAAAATTCGGTACCTCTGATGGTGAGGCCGGAGCAGCAATGGCCACCTCAGCCACCGCCGCTGCAGCAGCAAGATCATCAGGGACTGATGATGGGTACTGATCATCATCAGAACCAAGGGGAGGATTATCATGATCAGCAAGATAAAGAGAACAATATCGGTGATGACGATGATGATGAGGAGGATGAAGAGGAGGAGGATGAGGAGGAGGAGGATGATGATGATGAAGGAGATGGGAACTATGAGATAGTGGCAAACAAACAAGCTCCAGTGGGTGCAGCAACAGCTGAATGA

Protein Analysis

666

Amino Acids

74.38

Weight (kDa)

5.66

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 62 - 148 3.1e-22 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 455 - 542 2.6e-24 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76880
fragaria_vesca FvH4_2g13850 FvH4_2g13850
malus_domestica MD05G1024400.v1.1 MD10G1025100.v1.1
prunus_persica Prupe.8G028700_v2.0.a1
pyrus_communis pycom05g01550 pycom05g01560 pycom10g01650
rosa_chinensis RchiOBHm_Chr6g0275541
rosa_laevigata RLG00000013458
rosa_multiflora Rmu_ssc0000162.1_g000013
rosa_roxburghii Rroxscaffold_7G00193200
rosa_rugosa Rorug06G0093800
rosa_samantha Rh6AG206300 Rh6BG209200 Rh6CG211400 Rh6DG201800
rosa_wichuraiana Rw6G017900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1620
Acc36I ACCTGC 1 cut(s) 1620
Acc65I GGTACC 1 cut(s) 1714
AccB1I GGYRCC 1 cut(s) 1714
AccI GTMKAC 2 cut(s) 357, 506
AccII CGCG 5 cut(s) 45, 196, 1074, 1121, 1246
AclI AACGTT 1 cut(s) 128
AclWI GGATC 2 cut(s) 946, 975
AcoI YGGCCR 5 cut(s) 40, 54, 191, 1370, 1745
AcsI RAATTY 2 cut(s) 850, 1708
AcuI CTGAAG 1 cut(s) 956
AfeI AGCGCT 1 cut(s) 306
AfiI CCNNNNNNNGG 3 cut(s) 80, 464, 1825
AflIII ACRYGT 1 cut(s) 1595
AgsI TTSAA 3 cut(s) 849, 1549, 1699
AhlI ACTAGT 2 cut(s) 17, 1670
AjiI CACGTC 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AleI CACNNNNGTG 1 cut(s) 62
Alw21I GWGCWC 2 cut(s) 35, 1361
Alw26I GTCTC 3 cut(s) 197, 928, 983
AlwI GGATC 2 cut(s) 946, 975
AlwNI CAGNNNCTG 1 cut(s) 1789
Ama87I CYCGRG 1 cut(s) 1468
Aor51HI AGCGCT 1 cut(s) 306
AoxI GGCC 9 cut(s) 40, 54, 191, 385, 1370, 1448, 1577, 1730, 1745
ApoI RAATTY 2 cut(s) 850, 1708
Asp700I GAANNNNTTC 2 cut(s) 923, 980
Asp718I GGTACC 1 cut(s) 1714
AspLEI GCGC 4 cut(s) 198, 307, 326, 1074
AspS9I GGNCC 3 cut(s) 269, 1439, 1448
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 5 cut(s) 131, 1300, 1601, 1738, 1877
AsuII TTCGAA 1 cut(s) 1589
AsuNHI GCTAGC 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 1468
AvaII GGWCC 2 cut(s) 269, 1439
AxyI CCTNAGG 1 cut(s) 1581
BaeI ACNNNNGTAYC 2 cut(s) 1376, 1409
BalI TGGCCA 2 cut(s) 56, 1747
BanI GGYRCC 1 cut(s) 1714
BanII GRGCYC 2 cut(s) 35, 1361
BarI GAAGNNNNNNTAC 2 cut(s) 1475, 1507
BbsI GAAGAC 1 cut(s) 1598
Bbv12I GWGCWC 2 cut(s) 35, 1361
BbvCI CCTCAGC 1 cut(s) 1752
BccI CCATC 8 cut(s) 44, 607, 1001, 1045, 1362, 1717, 1789, 1931
BceAI ACGGC 1 cut(s) 528
BciVI GTATCC 2 cut(s) 1156, 1484
BclI TGATCA 4 cut(s) 1395, 1648, 1804, 1837
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 3 cut(s) 197, 928, 983
BcuI ACTAGT 2 cut(s) 17, 1670
BfaI CTAG 5 cut(s) 18, 299, 1082, 1616, 1671
BfmI CTRYAG 2 cut(s) 708, 1766
BfoI RGCGCY 2 cut(s) 308, 327
BfuAI ACCTGC 1 cut(s) 1620
BfuI GTATCC 2 cut(s) 1156, 1484
BglI GCCNNNNNGGC 1 cut(s) 393
BmcAI AGTACT 5 cut(s) 472, 589, 1544, 1669, 1675
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 2 cut(s) 269, 1439
BmeT110I CYCGRG 1 cut(s) 1468
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 269, 1439, 1448
BmiI GGNNCC 2 cut(s) 270, 1716
BmrFI CCNGG 1 cut(s) 465
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 5 cut(s) 37, 244, 1105, 1338, 1502
BmtI GCTAGC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 1598
BplI GAGNNNNNCTC 2 cut(s) 1451, 1483
BpmI CTGGAG 1 cut(s) 1956
Bpu10I CCTNAGC 2 cut(s) 492, 1752
Bpu14I TTCGAA 1 cut(s) 1589
BpuEI CTTGAG 2 cut(s) 627, 1071
BpuMI CCSGG 1 cut(s) 465
BsaBI GATNNNNATC 1 cut(s) 1809
BsaI GGTCTC 1 cut(s) 983
BsaJI CCNNGG 3 cut(s) 1119, 1244, 1819
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 464, 1825
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 3 cut(s) 684, 1198, 1973
Bse21I CCTNAGG 1 cut(s) 1581
Bse3DI GCAATG 4 cut(s) 103, 552, 648, 1748
Bse8I GATNNNNATC 1 cut(s) 1809
BseDI CCNNGG 3 cut(s) 1119, 1244, 1819
BseGI GGATG 5 cut(s) 574, 952, 1894, 1909, 1924
BseJI GATNNNNATC 1 cut(s) 1809
BseLI CCNNNNNNNGG 3 cut(s) 80, 464, 1825
BseMI GCAATG 4 cut(s) 103, 552, 648, 1748
BseMII CTCAG 4 cut(s) 790, 1394, 1572, 1766
BseNI ACTGG 3 cut(s) 684, 1198, 1973
BseRI GAGGAG 8 cut(s) 184, 896, 1898, 1910, 1913, 1922, 1925, 1928
BseX3I CGGCCG 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 1239
Bsh1236I CGCG 5 cut(s) 45, 196, 1074, 1121, 1246
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 9 cut(s) 42, 56, 193, 387, 1372, 1450, 1579, 1732, 1747
BshNI GGYRCC 1 cut(s) 1714
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 35, 1361
BsiHKCI CYCGRG 1 cut(s) 1468
BsiSI CCGG 3 cut(s) 393, 464, 1733
BslFI GGGAC 1 cut(s) 1800
BslI CCNNNNNNNGG 3 cut(s) 80, 464, 1825
BsmAI GTCTC 3 cut(s) 197, 928, 983
BsmFI GGGAC 1 cut(s) 1800
BsmI GAATGC 1 cut(s) 1047
BsnI GGCC 9 cut(s) 42, 56, 193, 387, 1372, 1450, 1579, 1732, 1747
Bso31I GGTCTC 1 cut(s) 983
BsoBI CYCGRG 1 cut(s) 1468
Bsp119I TTCGAA 1 cut(s) 1589
Bsp1286I GDGCHC 2 cut(s) 35, 1361
Bsp143I GATC 9 cut(s) 427, 951, 967, 1094, 1395, 1648, 1777, 1804, 1837
BspANI GGCC 9 cut(s) 42, 56, 193, 387, 1372, 1450, 1579, 1732, 1747
BspCNI CTCAG 4 cut(s) 789, 1395, 1573, 1765
BspFNI CGCG 5 cut(s) 45, 196, 1074, 1121, 1246
BspHI TCATGA 1 cut(s) 1834
BspLI GGNNCC 2 cut(s) 270, 1716
BspMAI CTGCAG 1 cut(s) 1770
BspMI ACCTGC 1 cut(s) 1620
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 2 cut(s) 946, 975
BspT104I TTCGAA 1 cut(s) 1589
BspT107I GGYRCC 1 cut(s) 1714
BspTNI GGTCTC 1 cut(s) 983
BsrDI GCAATG 4 cut(s) 103, 552, 648, 1748
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 3 cut(s) 684, 1198, 1973
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 3 cut(s) 1119, 1244, 1819
BssMI GATC 9 cut(s) 427, 951, 967, 1094, 1395, 1648, 1777, 1804, 1837
BssT1I CCWWGG 1 cut(s) 1819
Bst4CI ACNGT 3 cut(s) 228, 595, 1215
Bst6I CTCTTC 5 cut(s) 276, 865, 902, 971, 1887
BstBI TTCGAA 1 cut(s) 1589
BstC8I GCNNGC 4 cut(s) 296, 300, 897, 1254
BstDEI CTNAG 7 cut(s) 25, 492, 776, 1403, 1422, 1581, 1752
BstDSI CCRYGG 2 cut(s) 1119, 1244
BstF5I GGATG 5 cut(s) 574, 952, 1894, 1909, 1924
BstFNI CGCG 5 cut(s) 45, 196, 1074, 1121, 1246
BstH2I RGCGCY 2 cut(s) 308, 327
BstHHI GCGC 4 cut(s) 198, 307, 326, 1074
BstKTI GATC 9 cut(s) 430, 954, 970, 1097, 1398, 1651, 1780, 1807, 1840
BstMAI GTCTC 3 cut(s) 197, 928, 983
BstMBI GATC 9 cut(s) 427, 951, 967, 1094, 1395, 1648, 1777, 1804, 1837
BstMCI CGRYCG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 1599
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 2 cut(s) 708, 1766
BstUI CGCG 5 cut(s) 45, 196, 1074, 1121, 1246
BstV2I GAAGAC 1 cut(s) 1598
BstX2I RGATCY 1 cut(s) 967
BstXI CCANNNNNNTGG 2 cut(s) 64, 1436
BstYI RGATCY 1 cut(s) 967
BstZI CGGCCG 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 1581
BsuI GTATCC 2 cut(s) 1156, 1484
BsuRI GGCC 9 cut(s) 42, 56, 193, 387, 1372, 1450, 1579, 1732, 1747
BtgI CCRYGG 2 cut(s) 1119, 1244
BtgZI GCGATG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 5 cut(s) 574, 952, 1894, 1909, 1924
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 3 cut(s) 801, 834, 1980
BveI ACCTGC 1 cut(s) 1620
Cac8I GCNNGC 4 cut(s) 296, 300, 897, 1254
CaiI CAGNNNCTG 1 cut(s) 1789
CciI TCATGA 1 cut(s) 1834
CfoI GCGC 4 cut(s) 198, 307, 326, 1074
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 3 cut(s) 269, 1439, 1448
Cfr42I CCGCGG 2 cut(s) 1122, 1247
CviAII CATG 4 cut(s) 235, 1126, 1596, 1835
DdeI CTNAG 7 cut(s) 25, 492, 776, 1403, 1422, 1581, 1752
DpnI GATC 9 cut(s) 429, 953, 969, 1096, 1397, 1650, 1779, 1806, 1839
DpnII GATC 9 cut(s) 427, 951, 967, 1094, 1395, 1648, 1777, 1804, 1837
EaeI YGGCCR 5 cut(s) 40, 54, 191, 1370, 1745
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 5 cut(s) 276, 865, 902, 971, 1887
EarI CTCTTC 5 cut(s) 276, 865, 902, 971, 1887
EciI GGCGGA 1 cut(s) 726
Ecl136II GAGCTC 2 cut(s) 33, 1359
EclXI CGGCCG 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 1819
Eco147I AGGCCT 1 cut(s) 1579
Eco24I GRGCYC 2 cut(s) 35, 1361
Eco31I GGTCTC 1 cut(s) 983
Eco47I GGWCC 2 cut(s) 269, 1439
Eco47III AGCGCT 1 cut(s) 306
Eco52I CGGCCG 1 cut(s) 40
Eco53kI GAGCTC 2 cut(s) 33, 1359
Eco57I CTGAAG 1 cut(s) 956
Eco81I CCTNAGG 1 cut(s) 1581
Eco88I CYCGRG 1 cut(s) 1468
EcoICRI GAGCTC 2 cut(s) 33, 1359
EcoO109I RGGNCCY 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 1819
EcoT38I GRGCYC 2 cut(s) 35, 1361
ErhI CCWWGG 1 cut(s) 1819
FaeI CATG 4 cut(s) 238, 1129, 1599, 1838
FaiI YATR 9 cut(s) 236, 277, 710, 830, 1127, 1597, 1629, 1836, 1947
FalI AAGNNNNNCTT 8 cut(s) 911, 943, 954, 986, 968, 1000, 1437, 1469
FaqI GGGAC 1 cut(s) 1800
FatI CATG 4 cut(s) 234, 1125, 1595, 1834
FauI CCCGC 2 cut(s) 621, 888
FbaI TGATCA 4 cut(s) 1395, 1648, 1804, 1837
FblI GTMKAC 2 cut(s) 357, 506
FokI GGATG 5 cut(s) 561, 959, 1901, 1916, 1931
FriOI GRGCYC 2 cut(s) 35, 1361
FspBI CTAG 5 cut(s) 18, 299, 1082, 1616, 1671
GlaI GCGC 4 cut(s) 197, 306, 325, 1073
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 1956
HaeII RGCGCY 2 cut(s) 308, 327
HaeIII GGCC 9 cut(s) 42, 56, 193, 387, 1372, 1450, 1579, 1732, 1747
HapII CCGG 3 cut(s) 393, 464, 1733
HhaI GCGC 4 cut(s) 198, 307, 326, 1074
Hin1II CATG 4 cut(s) 238, 1129, 1599, 1838
Hin6I GCGC 4 cut(s) 196, 305, 324, 1072
HinP1I GCGC 4 cut(s) 196, 305, 324, 1072
HindIII AAGCTT 1 cut(s) 1032
HinfI GANTC 7 cut(s) 11, 460, 981, 1059, 1078, 1418, 1586
HpaII CCGG 3 cut(s) 393, 464, 1733
HphI GGTGA 5 cut(s) 131, 1300, 1601, 1738, 1877
Hpy166II GTNNAC 3 cut(s) 358, 507, 1007
Hpy8I GTNNAC 3 cut(s) 358, 507, 1007
HpyCH4III ACNGT 3 cut(s) 228, 595, 1215
HpyCH4IV ACGT 5 cut(s) 128, 240, 354, 815, 1003
HpyF3I CTNAG 7 cut(s) 25, 492, 776, 1403, 1422, 1581, 1752
HpySE526I ACGT 5 cut(s) 128, 240, 354, 815, 1003
Hsp92II CATG 4 cut(s) 238, 1129, 1599, 1838
HspAI GCGC 4 cut(s) 196, 305, 324, 1072
KpnI GGTACC 1 cut(s) 1718
Ksp22I TGATCA 4 cut(s) 1395, 1648, 1804, 1837
KspI CCGCGG 2 cut(s) 1122, 1247
Kzo9I GATC 9 cut(s) 427, 951, 967, 1094, 1395, 1648, 1777, 1804, 1837
LmnI GCTCC 6 cut(s) 30, 38, 76, 171, 1735, 1975
LweI GCATC 5 cut(s) 37, 244, 1105, 1338, 1502
MaeI CTAG 5 cut(s) 18, 299, 1082, 1616, 1671
MaeII ACGT 5 cut(s) 128, 240, 354, 815, 1003
MaeIII GTNAC 3 cut(s) 1200, 1215, 1288
MalI GATC 9 cut(s) 429, 953, 969, 1096, 1397, 1650, 1779, 1806, 1839
MboI GATC 9 cut(s) 427, 951, 967, 1094, 1395, 1648, 1777, 1804, 1837
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 2 cut(s) 35, 1361
MlsI TGGCCA 2 cut(s) 56, 1747
MluNI TGGCCA 2 cut(s) 56, 1747
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 3 cut(s) 482, 836, 867
Mox20I TGGCCA 2 cut(s) 56, 1747
MroXI GAANNNNTTC 2 cut(s) 923, 980
MscI TGGCCA 2 cut(s) 56, 1747
MseI TTAA 4 cut(s) 264, 434, 666, 1536
MslI CAYNNNNRTG 3 cut(s) 62, 239, 1366
Msp20I TGGCCA 2 cut(s) 56, 1747
MspA1I CMGCKG 8 cut(s) 62, 93, 521, 608, 1121, 1246, 1765, 1991
MspI CCGG 3 cut(s) 393, 464, 1733
MspR9I CCNGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 1047
MvnI CGCG 5 cut(s) 45, 196, 1074, 1121, 1246
NciI CCSGG 1 cut(s) 465
NdeII GATC 9 cut(s) 427, 951, 967, 1094, 1395, 1648, 1777, 1804, 1837
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 4 cut(s) 238, 1129, 1599, 1838
NlaIV GGNNCC 2 cut(s) 270, 1716
NmuCI GTSAC 2 cut(s) 1200, 1288
NspI RCATGY 1 cut(s) 1599
NspV TTCGAA 1 cut(s) 1589
OliI CACNNNNGTG 1 cut(s) 62
PagI TCATGA 1 cut(s) 1834
PaqCI CACCTGC 1 cut(s) 1620
PceI AGGCCT 1 cut(s) 1579
PciI ACATGT 1 cut(s) 1595
PcsI WCGNNNNNNNCGW 2 cut(s) 1332, 1869
PctI GAATGC 1 cut(s) 1047
PdmI GAANNNNTTC 2 cut(s) 923, 980
PfeI GAWTC 6 cut(s) 11, 981, 1059, 1078, 1418, 1586
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 269
PscI ACATGT 1 cut(s) 1595
Psp124BI GAGCTC 2 cut(s) 35, 1361
Psp1406I AACGTT 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 270, 1716
PspPI GGNCC 3 cut(s) 269, 1439, 1448
PspPPI RGGWCCY 1 cut(s) 269
PstI CTGCAG 1 cut(s) 1770
PstNI CAGNNNCTG 1 cut(s) 1789
PsuI RGATCY 1 cut(s) 967
PvuII CAGCTG 4 cut(s) 62, 521, 608, 1991
RseI CAYNNNNRTG 3 cut(s) 62, 239, 1366
SacI GAGCTC 2 cut(s) 35, 1361
SacII CCGCGG 2 cut(s) 1122, 1247
SaqAI TTAA 4 cut(s) 264, 434, 666, 1536
Sau3AI GATC 9 cut(s) 427, 951, 967, 1094, 1395, 1648, 1777, 1804, 1837
Sau96I GGNCC 3 cut(s) 269, 1439, 1448
ScaI AGTACT 5 cut(s) 472, 589, 1544, 1669, 1675
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 2 cut(s) 35, 1361
SfaNI GCATC 5 cut(s) 37, 244, 1105, 1338, 1502
SfcI CTRYAG 2 cut(s) 708, 1766
Sfr303I CCGCGG 2 cut(s) 1122, 1247
SfuI TTCGAA 1 cut(s) 1589
SgrBI CCGCGG 2 cut(s) 1122, 1247
SinI GGWCC 2 cut(s) 269, 1439
SmiMI CAYNNNNRTG 3 cut(s) 62, 239, 1366
SmlI CTYRAG 2 cut(s) 642, 1086
SmoI CTYRAG 2 cut(s) 642, 1086
SpeI ACTAGT 2 cut(s) 17, 1670
SseBI AGGCCT 1 cut(s) 1579
SspMI CTAG 5 cut(s) 18, 299, 1082, 1616, 1671
SstI GAGCTC 2 cut(s) 35, 1361
StuI AGGCCT 1 cut(s) 1579
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 1819
TaaI ACNGT 3 cut(s) 228, 595, 1215
TaiI ACGT 5 cut(s) 131, 243, 357, 818, 1006
TaqI TCGA 8 cut(s) 104, 319, 426, 444, 930, 996, 1589, 1688
TaqII GACCGA 1 cut(s) 1456
TatI WGTACW 5 cut(s) 470, 587, 1542, 1667, 1673
TfiI GAWTC 6 cut(s) 11, 981, 1059, 1078, 1418, 1586
Tru1I TTAA 4 cut(s) 264, 434, 666, 1536
Tru9I TTAA 4 cut(s) 264, 434, 666, 1536
TscAI CASTG 3 cut(s) 808, 841, 1980
TseFI GTSAC 2 cut(s) 1200, 1288
Tsp45I GTSAC 2 cut(s) 1200, 1288
TspDTI ATGAA 4 cut(s) 678, 956, 1905, 1944
TspRI CASTG 3 cut(s) 808, 841, 1980
VpaK11BI GGWCC 2 cut(s) 269, 1439
XapI RAATTY 2 cut(s) 850, 1708
XceI RCATGY 1 cut(s) 1599
XmiI GTMKAC 2 cut(s) 357, 506
XmnI GAANNNNTTC 2 cut(s) 923, 980
XspI CTAG 5 cut(s) 18, 299, 1082, 1616, 1671
ZrmI AGTACT 5 cut(s) 472, 589, 1544, 1669, 1675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.