pycom05g01560
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011818
Physical Location & Seq
Forward (+)
1887254 .. 1887775
522 bp
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UTR
Exon/CDS
Intron
pycom05g01560.1

Sequence Viewer

Length: 522 bp
ATGAGGAAGCTCGGTTACAATCGGAACGCAAAAAGGTGCAAGGAGAAGTGGGAGAACATTAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGAGAAGGCCTGAGGATTCGAAGACATGTCCCTACTTTCACCTGCTAGATAGTTTGTATAGAGAGAGGAACAATTTTGATCAGAACAATGTCAACAGTACTAGTACTACTAATTCTTCGAGCCAATTCAAGCCCGAAAATTCGGTACCTCTGATGGTGAGGCCGGAGCAACAATGGCCACCTGAGCCACCGCCGCACCAGCAGCAAGATCATCAGGGACTGATGATGGGTACTGATCATCATCAGAACCAAGGGGAGGATCATCATGATCAGCAAGATAAAGAGAACAATATCGGTGATGATGATGATGATGAGGAGGATGAAGAGGAGGAGGATGAGGAGGAGGATGATGATGATGATGAAGGAGATGGGAACTATGAGATAGTGGCAAACAAACCAGCTTCAGTGGGTGCAGCAACAGCTGAATGA

Protein Analysis

174

Amino Acids

20.18

Weight (kDa)

4.56

Isoelectric Point (pI)

62.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 1 - 50 6.4e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011818)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76880
fragaria_vesca FvH4_2g13850 FvH4_2g13850
malus_domestica MD05G1024400.v1.1 MD10G1025100.v1.1
prunus_persica Prupe.8G028700_v2.0.a1
pyrus_communis pycom05g01550 pycom05g01560 pycom10g01650
rosa_chinensis RchiOBHm_Chr6g0275541
rosa_laevigata RLG00000013458
rosa_multiflora Rmu_ssc0000162.1_g000013
rosa_roxburghii Rroxscaffold_7G00193200
rosa_rugosa Rorug06G0093800
rosa_samantha Rh6AG206300 Rh6BG209200 Rh6CG211400 Rh6DG201800
rosa_wichuraiana Rw6G017900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 144
Acc65I GGTACC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 238
AciI CCGC 2 cut(s) 284, 287
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 5 cut(s) 68, 193, 199, 240, 325
AfiI CCNNNNNNNGG 1 cut(s) 349
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 2 cut(s) 73, 223
AhlI ACTAGT 1 cut(s) 194
AluBI AGCT 3 cut(s) 10, 494, 515
AluI AGCT 3 cut(s) 10, 494, 515
AlwI GGATC 1 cut(s) 360
AlwNI CAGNNNCTG 1 cut(s) 313
AoxI GGCC 3 cut(s) 101, 254, 269
ApeKI GCWGC 2 cut(s) 295, 506
ApoI RAATTY 1 cut(s) 232
Asp718I GGTACC 1 cut(s) 238
AsuHPI GGTGA 3 cut(s) 125, 262, 401
AsuII TTCGAA 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 105
BalI TGGCCA 1 cut(s) 271
BanI GGYRCC 1 cut(s) 238
BarI GAAGNNNNNNTAC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 307, 518
BccI CCATC 3 cut(s) 241, 313, 455
BclI TGATCA 3 cut(s) 172, 328, 361
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 2 cut(s) 140, 195
BfuAI ACCTGC 1 cut(s) 144
BisI GCNGC 3 cut(s) 287, 296, 507
BlsI GCNGC 3 cut(s) 288, 297, 508
BmcAI AGTACT 3 cut(s) 68, 193, 199
BmiI GGNNCC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 3 cut(s) 418, 433, 445
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 2 cut(s) 96, 267
BseRI GAGGAG 5 cut(s) 422, 434, 437, 446, 449
BseXI GCAGC 2 cut(s) 307, 518
BshFI GGCC 3 cut(s) 103, 256, 271
BshNI GGYRCC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 2 cut(s) 108, 324
BslI CCNNNNNNNGG 1 cut(s) 349
BsmFI GGGAC 2 cut(s) 108, 324
BsnI GGCC 3 cut(s) 103, 256, 271
Bsp119I TTCGAA 1 cut(s) 113
Bsp143I GATC 5 cut(s) 172, 301, 328, 352, 361
BspACI CCGC 2 cut(s) 284, 287
BspANI GGCC 3 cut(s) 103, 256, 271
BspCNI CTCAG 2 cut(s) 97, 268
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 5 cut(s) 172, 301, 328, 352, 361
BssT1I CCWWGG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 411
BstBI TTCGAA 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 105, 276
BstF5I GGATG 3 cut(s) 418, 433, 445
BstKTI GATC 5 cut(s) 175, 304, 331, 355, 364
BstMBI GATC 5 cut(s) 172, 301, 328, 352, 361
BstMWI GCNNNNNNNGC 6 cut(s) 268, 277, 286, 292, 295, 512
BstNSI RCATGY 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 307, 518
BstV2I GAAGAC 1 cut(s) 122
Bsu36I CCTNAGG 1 cut(s) 105
BsuRI GGCC 3 cut(s) 103, 256, 271
BtsCI GGATG 3 cut(s) 418, 433, 445
BtsIMutI CAGTG 1 cut(s) 504
BveI ACCTGC 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 313
CciI TCATGA 1 cut(s) 358
Csp6I GTAC 5 cut(s) 67, 192, 198, 239, 324
CviAII CATG 2 cut(s) 120, 359
CviJI RGCY 9 cut(s) 10, 103, 216, 226, 256, 271, 280, 494, 515
CviKI_1 RGCY 9 cut(s) 10, 103, 216, 226, 256, 271, 280, 494, 515
CviQI GTAC 5 cut(s) 67, 192, 198, 239, 324
DdeI CTNAG 2 cut(s) 105, 276
DpnI GATC 5 cut(s) 174, 303, 330, 354, 363
DpnII GATC 5 cut(s) 172, 301, 328, 352, 361
EaeI YGGCCR 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 343
Eco147I AGGCCT 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 480
Eco81I CCTNAGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 2 cut(s) 123, 362
FaiI YATR 4 cut(s) 121, 153, 360, 471
FaqI GGGAC 2 cut(s) 108, 324
FatI CATG 2 cut(s) 119, 358
FbaI TGATCA 3 cut(s) 172, 328, 361
Fnu4HI GCNGC 3 cut(s) 287, 296, 507
FokI GGATG 3 cut(s) 425, 440, 452
Fsp4HI GCNGC 3 cut(s) 287, 296, 507
FspBI CTAG 2 cut(s) 140, 195
GluI GCNGC 3 cut(s) 287, 296, 507
HaeIII GGCC 3 cut(s) 103, 256, 271
HapII CCGG 1 cut(s) 257
Hin1II CATG 2 cut(s) 123, 362
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 257
HphI GGTGA 3 cut(s) 125, 262, 401
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 4 cut(s) 24, 177, 246, 339
Hpy188III TCNNGA 2 cut(s) 73, 359
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 76, 93, 449
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 39, 506
HpyF10VI GCNNNNNNNGC 6 cut(s) 268, 277, 286, 292, 295, 512
HpyF3I CTNAG 2 cut(s) 105, 276
Hsp92II CATG 2 cut(s) 123, 362
KpnI GGTACC 1 cut(s) 242
Ksp22I TGATCA 3 cut(s) 172, 328, 361
Kzo9I GATC 5 cut(s) 172, 301, 328, 352, 361
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 7 cut(s) 117, 149, 270, 288, 293, 305, 504
Lsp1109I GCAGC 2 cut(s) 307, 518
MaeI CTAG 2 cut(s) 140, 195
MaeIII GTNAC 1 cut(s) 14
MalI GATC 5 cut(s) 174, 303, 330, 354, 363
MboI GATC 5 cut(s) 172, 301, 328, 352, 361
MboII GAAGA 3 cut(s) 127, 201, 428
MlsI TGGCCA 1 cut(s) 271
MluCI AATT 4 cut(s) 166, 205, 218, 232
MluNI TGGCCA 1 cut(s) 271
Mox20I TGGCCA 1 cut(s) 271
MscI TGGCCA 1 cut(s) 271
MseI TTAA 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 271
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 1 cut(s) 257
MwoI GCNNNNNNNGC 6 cut(s) 268, 277, 286, 292, 295, 512
NdeII GATC 5 cut(s) 172, 301, 328, 352, 361
NlaIII CATG 2 cut(s) 123, 362
NlaIV GGNNCC 1 cut(s) 240
NspI RCATGY 1 cut(s) 123
NspV TTCGAA 1 cut(s) 113
PagI TCATGA 1 cut(s) 358
PaqCI CACCTGC 1 cut(s) 144
PceI AGGCCT 1 cut(s) 103
PciI ACATGT 1 cut(s) 119
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 288, 297, 508
PscI ACATGT 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 5 cut(s) 68, 193, 199, 240, 325
RsaNI GTAC 5 cut(s) 67, 192, 198, 239, 324
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 3 cut(s) 287, 296, 507
Sau3AI GATC 5 cut(s) 172, 301, 328, 352, 361
ScaI AGTACT 3 cut(s) 68, 193, 199
SetI ASST 7 cut(s) 12, 38, 138, 244, 277, 496, 517
SfuI TTCGAA 1 cut(s) 113
SpeI ACTAGT 1 cut(s) 194
Sse9I AATT 4 cut(s) 166, 205, 218, 232
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 2 cut(s) 284, 287
SspMI CTAG 2 cut(s) 140, 195
StuI AGGCCT 1 cut(s) 103
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 113, 212
TasI AATT 4 cut(s) 166, 205, 218, 232
TatI WGTACW 3 cut(s) 66, 191, 197
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 504
TseI GCWGC 2 cut(s) 295, 506
TspDTI ATGAA 2 cut(s) 429, 468
TspRI CASTG 1 cut(s) 504
XapI RAATTY 1 cut(s) 232
XceI RCATGY 1 cut(s) 123
XspI CTAG 2 cut(s) 140, 195
ZrmI AGTACT 3 cut(s) 68, 193, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.