AT1G77020

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015483
Physical Location & Seq
Reverse (-)
28944843 .. 28947186
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77020.1

Sequence Viewer

Length: 1140 bp
ATGGTGAAGGAAACAGTGTATTATGATGTTCTTGGTGTCACTCCCTCTGCTTCTGAGGAAGAGATTCGCAAGGCTTATTACATCAAGGCAAGACAAGTTCATCCTGACAAGAATCAAGGTGATCCTCTAGCTGCTGAAAAGTTTCAGGTTCTTGGTGAAGCTTACCAGGTTCTAAGTGATCCTGTTCATCGTGAAGCGTATGATCGGACTGGAAAATTCTCAGCTCCCAAAGAAACAATGGTTGATCCAACGGCTGTTTTCGCTCTTCTTTTCGGAAGTGAACTATTCGAGGATTATATCGGTCACTTGGCTGTTGCATCAATGGCTTCCACTCAAATGGCTTCTGAAATCGAAAACTCTGATCAGTTTCAAGACAAACTAAAGGCTGTTCAGAAAGAAAGAGAAGAAAACCTTTCAAGGTTTCTCAAAGATTTTCTGAGTCAATATGTCCACGGAGACAAAGAAGGATTCATAAGCCGCGCAGAATCTGAAGCCAAGAGACTTTCAGATGCAGCTTTTGGAGCGGATATGTTGCATACAATTGGATATGTATACACAAGACAAGCAGCTCAAGAACTTGGGAAGAGAGCTCTTTACTTAGGAGTTCCATTTGTAGCTGAATGGGTTAGGAACAAAGGTCATTCTTGGAAATCACAGATTAGTGCAGCTAAAGGAGCTTTACAGTTACTTCAGCTGCAAGAAGAGAGTAACCGGAGATTAAAGAAAGATGGGACTAGTCCAGCAAATGAGTTAGAGTCTCATATTCAGACCAACAAAGAAACATTGATGGGATCTTTGTGGAAACTTAATGTTGTCGACATTGAAGTGACTCTGTTACATGTGTGTCAGATGGTCTTTCGCGAAAACAATTTGAGAAAGGAGGAGCTCAAGTCTAGAGCAATGGCTCTCAAGATTCTTGGGAAGATTTTTCAGCAAGAAAAGCAATCGAAGAACGGTACAACATCAAGAAAAGAAGATGAAGACAGCGACGATGATGACAGTAGCAGCGATGACGATTCTTCACAACCACTTTCATACAGAACTCCTCTGCTTACTCAGGGGATTGGTAGACTTTTCAGATGTCTCTGCAATCCAGCATTCGATGTAGACGATGATGAAATTGTATACAAAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

379

Amino Acids

42.83

Weight (kDa)

5.39

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 7 - 68 2.7e-25 DnaJ domain
DnaJ-X PF14308 131 - 325 2.2e-53 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77020
fragaria_vesca FvH4_2g15170 FvH4_2g15170
malus_domestica MD05G1010600.v1.1 MD10G1009300.v1.1
prunus_persica Prupe.8G013200_v2.0.a1 Prupe.8G013200_v2.0.a1
pyrus_communis pycom05g00560
rosa_chinensis RchiOBHm_Chr6g0277831
rosa_laevigata RLG00000013265
rosa_rugosa Rorug06G0111800 Rorug06G0111900
rosa_samantha Rh6AG222600 Rh6CG228600 Rh6DG219700
rosa_wichuraiana Rw6G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 524
AccI GTMKAC 5 cut(s) 552, 816, 1069, 1107, 1125
AccII CGCG 2 cut(s) 480, 861
AciI CCGC 2 cut(s) 478, 524
AclWI GGATC 4 cut(s) 116, 173, 239, 799
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 2 cut(s) 510, 674
AfaI GTAC 1 cut(s) 958
AflIII ACRYGT 1 cut(s) 838
AgsI TTSAA 3 cut(s) 371, 417, 824
AhlI ACTAGT 1 cut(s) 734
AjnI CCWGG 1 cut(s) 165
Alw21I GWGCWC 2 cut(s) 592, 888
Alw26I GTCTC 4 cut(s) 450, 493, 762, 1088
AlwI GGATC 4 cut(s) 116, 173, 239, 799
AlwNI CAGNNNCTG 1 cut(s) 488
ApeKI GCWGC 6 cut(s) 131, 512, 566, 665, 694, 1005
ApoI RAATTY 1 cut(s) 215
Asp700I GAANNNNTTC 2 cut(s) 63, 141
AspLEI GCGC 1 cut(s) 482
AsuHPI GGTGA 3 cut(s) 16, 131, 167
BanII GRGCYC 2 cut(s) 592, 888
BbsI GAAGAC 1 cut(s) 987
Bbv12I GWGCWC 2 cut(s) 592, 888
BbvI GCAGC 6 cut(s) 118, 524, 578, 677, 681, 1017
BccI CCATC 3 cut(s) 722, 781, 844
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 167
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 4 cut(s) 450, 493, 762, 1088
BcuI ACTAGT 1 cut(s) 734
BfaI CTAG 3 cut(s) 128, 735, 894
BisI GCNGC 7 cut(s) 132, 478, 513, 567, 666, 695, 1006
BlsI GCNGC 7 cut(s) 133, 479, 514, 568, 667, 696, 1007
Bme1390I CCNGG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 2 cut(s) 326, 499
BpiI GAAGAC 1 cut(s) 987
BpuEI CTTGAG 3 cut(s) 555, 872, 893
BsaJI CCNNGG 1 cut(s) 451
BsaWI WCCGGW 1 cut(s) 711
BsaXI ACNNNNNCTCC 2 cut(s) 875, 905
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 906
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 4 cut(s) 45, 234, 428, 1070
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 2 cut(s) 896, 1035
BseXI GCAGC 6 cut(s) 118, 524, 578, 677, 681, 1017
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 2 cut(s) 480, 861
BsiHKAI GWGCWC 2 cut(s) 592, 888
BsiSI CCGG 1 cut(s) 712
BslFI GGGAC 1 cut(s) 745
BsmAI GTCTC 4 cut(s) 450, 493, 762, 1088
BsmFI GGGAC 1 cut(s) 745
BsmI GAATGC 1 cut(s) 1097
Bsp1286I GDGCHC 2 cut(s) 592, 888
Bsp143I GATC 6 cut(s) 121, 178, 202, 244, 361, 791
Bsp68I TCGCGA 1 cut(s) 861
BspACI CCGC 2 cut(s) 478, 524
BspCNI CTCAG 4 cut(s) 46, 233, 429, 1069
BspFNI CGCG 2 cut(s) 480, 861
BspPI GGATC 4 cut(s) 116, 173, 239, 799
BspQI GCTCTTC 1 cut(s) 270
BsrBI CCGCTC 1 cut(s) 524
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 6 cut(s) 121, 178, 202, 244, 361, 791
BssNAI GTATAC 2 cut(s) 553, 1126
Bst1107I GTATAC 2 cut(s) 553, 1126
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 4 cut(s) 16, 684, 956, 1001
Bst6I CTCTTC 4 cut(s) 54, 270, 578, 696
BstDEI CTNAG 6 cut(s) 54, 173, 220, 437, 598, 1056
BstDSI CCRYGG 1 cut(s) 451
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 2 cut(s) 480, 861
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 6 cut(s) 124, 181, 205, 247, 364, 794
BstMAI GTCTC 4 cut(s) 450, 493, 762, 1088
BstMBI GATC 6 cut(s) 121, 178, 202, 244, 361, 791
BstMWI GCNNNNNNNGC 5 cut(s) 260, 323, 521, 674, 940
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 842
BstSCI CCNGG 1 cut(s) 165
BstUI CGCG 2 cut(s) 480, 861
BstV1I GCAGC 6 cut(s) 118, 524, 578, 677, 681, 1017
BstV2I GAAGAC 1 cut(s) 987
BstX2I RGATCY 1 cut(s) 791
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 1 cut(s) 791
BstZ17I GTATAC 2 cut(s) 553, 1126
BtgI CCRYGG 1 cut(s) 451
BtgZI GCGATG 1 cut(s) 1023
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 21
BtuMI TCGCGA 1 cut(s) 861
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 1 cut(s) 482
CsiI ACCWGGT 1 cut(s) 165
Csp6I GTAC 1 cut(s) 957
CviAII CATG 1 cut(s) 839
CviQI GTAC 1 cut(s) 957
DdeI CTNAG 6 cut(s) 54, 173, 220, 437, 598, 1056
DpnI GATC 6 cut(s) 123, 180, 204, 246, 363, 793
DpnII GATC 6 cut(s) 121, 178, 202, 244, 361, 791
Eam1104I CTCTTC 4 cut(s) 54, 270, 578, 696
EarI CTCTTC 4 cut(s) 54, 270, 578, 696
Ecl136II GAGCTC 2 cut(s) 590, 886
Eco24I GRGCYC 2 cut(s) 592, 888
Eco53kI GAGCTC 2 cut(s) 590, 886
Eco57I CTGAAG 2 cut(s) 510, 674
EcoICRI GAGCTC 2 cut(s) 590, 886
EcoRII CCWGG 1 cut(s) 165
EcoT38I GRGCYC 2 cut(s) 592, 888
FaeI CATG 1 cut(s) 842
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 745
FatI CATG 1 cut(s) 838
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 5 cut(s) 552, 816, 1069, 1107, 1125
Fnu4HI GCNGC 7 cut(s) 132, 478, 513, 567, 666, 695, 1006
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 2 cut(s) 592, 888
Fsp4HI GCNGC 7 cut(s) 132, 478, 513, 567, 666, 695, 1006
FspBI CTAG 3 cut(s) 128, 735, 894
GlaI GCGC 1 cut(s) 481
GluI GCNGC 7 cut(s) 132, 478, 513, 567, 666, 695, 1006
HapII CCGG 1 cut(s) 712
HhaI GCGC 1 cut(s) 482
Hin1II CATG 1 cut(s) 842
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 9 cut(s) 64, 112, 439, 468, 485, 755, 829, 913, 1016
HpaII CCGG 1 cut(s) 712
HphI GGTGA 3 cut(s) 16, 131, 167
Hpy166II GTNNAC 7 cut(s) 281, 451, 553, 817, 1070, 1108, 1126
Hpy188III TCNNGA 8 cut(s) 104, 191, 371, 572, 860, 894, 910, 966
Hpy8I GTNNAC 7 cut(s) 281, 451, 553, 817, 1070, 1108, 1126
Hpy99I CGWCG 1 cut(s) 992
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 4 cut(s) 16, 684, 956, 1001
HpyCH4V TGCA 6 cut(s) 317, 512, 535, 665, 697, 1089
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 323, 521, 674, 940
HpyF3I CTNAG 6 cut(s) 54, 173, 220, 437, 598, 1056
Hsp92II CATG 1 cut(s) 842
HspAI GCGC 1 cut(s) 480
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 6 cut(s) 121, 178, 202, 244, 361, 791
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 4 cut(s) 229, 521, 674, 883
Lsp1109I GCAGC 6 cut(s) 118, 524, 578, 677, 681, 1017
LweI GCATC 2 cut(s) 326, 499
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 3 cut(s) 128, 735, 894
MaeIII GTNAC 6 cut(s) 37, 302, 684, 707, 826, 834
MalI GATC 6 cut(s) 123, 180, 204, 246, 363, 793
MbiI CCGCTC 1 cut(s) 524
MboI GATC 6 cut(s) 121, 178, 202, 244, 361, 791
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 2 cut(s) 592, 888
MluCI AATT 4 cut(s) 215, 540, 868, 1119
MlyI GAGTC 3 cut(s) 448, 764, 823
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 6 cut(s) 49, 55, 135, 283, 874, 1056
MroXI GAANNNNTTC 2 cut(s) 63, 141
MseI TTAA 2 cut(s) 719, 807
MslI CAYNNNNRTG 2 cut(s) 335, 824
MspA1I CMGCKG 1 cut(s) 694
MspI CCGG 1 cut(s) 712
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 1 cut(s) 540
Mva1269I GAATGC 1 cut(s) 1097
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 2 cut(s) 480, 861
MwoI GCNNNNNNNGC 5 cut(s) 260, 323, 521, 674, 940
NdeII GATC 6 cut(s) 121, 178, 202, 244, 361, 791
NlaIII CATG 1 cut(s) 842
NmuCI GTSAC 3 cut(s) 37, 302, 826
NruI TCGCGA 1 cut(s) 861
NspI RCATGY 1 cut(s) 842
PciI ACATGT 1 cut(s) 838
PciSI GCTCTTC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 1107
PctI GAATGC 1 cut(s) 1097
PdmI GAANNNNTTC 2 cut(s) 63, 141
PfeI GAWTC 6 cut(s) 64, 112, 468, 485, 913, 1016
PkrI GCNGC 7 cut(s) 133, 479, 514, 568, 667, 696, 1007
PleI GAGTC 3 cut(s) 447, 763, 823
PpsI GAGTC 3 cut(s) 447, 763, 823
PscI ACATGT 1 cut(s) 838
Psp124BI GAGCTC 2 cut(s) 592, 888
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 791
PvuII CAGCTG 1 cut(s) 694
RruI TCGCGA 1 cut(s) 861
RsaI GTAC 1 cut(s) 958
RsaNI GTAC 1 cut(s) 957
RseI CAYNNNNRTG 2 cut(s) 335, 824
SacI GAGCTC 2 cut(s) 592, 888
SalI GTCGAC 1 cut(s) 815
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 719, 807
SatI GCNGC 7 cut(s) 132, 478, 513, 567, 666, 695, 1006
Sau3AI GATC 6 cut(s) 121, 178, 202, 244, 361, 791
SchI GAGTC 3 cut(s) 448, 764, 823
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 592, 888
SexAI ACCWGGT 1 cut(s) 165
SfaNI GCATC 2 cut(s) 326, 499
SmiMI CAYNNNNRTG 2 cut(s) 335, 824
SmlI CTYRAG 3 cut(s) 570, 887, 908
SmoI CTYRAG 3 cut(s) 570, 887, 908
SpeI ACTAGT 1 cut(s) 734
Sse9I AATT 4 cut(s) 215, 540, 868, 1119
SsiI CCGC 2 cut(s) 478, 524
SspMI CTAG 3 cut(s) 128, 735, 894
SstI GAGCTC 2 cut(s) 592, 888
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 4 cut(s) 16, 684, 956, 1001
TaqI TCGA 5 cut(s) 288, 351, 816, 947, 1101
TaqII GACCGA 1 cut(s) 290
TasI AATT 4 cut(s) 215, 540, 868, 1119
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 6 cut(s) 64, 112, 468, 485, 913, 1016
Tru1I TTAA 2 cut(s) 719, 807
Tru9I TTAA 2 cut(s) 719, 807
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 3 cut(s) 37, 302, 826
TseI GCWGC 6 cut(s) 131, 512, 566, 665, 694, 1005
Tsp45I GTSAC 3 cut(s) 37, 302, 826
TspDTI ATGAA 6 cut(s) 89, 176, 460, 993, 1023, 1131
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 1 cut(s) 21
XapI RAATTY 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 893
XceI RCATGY 1 cut(s) 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 5 cut(s) 552, 816, 1069, 1107, 1125
XmnI GAANNNNTTC 2 cut(s) 63, 141
XspI CTAG 3 cut(s) 128, 735, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.