pycom05g00560

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0015483
Physical Location & Seq
Reverse (-)
716221 .. 720561
4341 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00560.10

Sequence Viewer

Length: 1221 bp
ATGGTGAAAGAAACCGAGTACTATGATGTCCTCAGCGTCACTCCCTCCGCTTCTGAGGAGGAAATTCGCAAGGCTTATTATCTTAAGGCAAGGCAAGTTCATCCGGATAAAAATCCAAACGATCCTCAGGCTGCCGAAAGATTTCAGGTACTTGGTGAAGCTTATCAGGTTTTGAGTGATCCGGTGCAAAGAGATGCATATGATCGAAATGGAAAGTACTGCATATCTAGGGAAACCATGCTTGATCCCACTGCTGTCTTTGCTTTACTTTTCGGAAGTGAATTATTTGAGGACTACATAGGACATCTAGCAGTAGCATCAATGGCTTCTTCTCAATTAGCTGGTGTAGGTGACAGCCCTGAGAAAGTTCATGATAAGTTGAAGGCCGTTCAGAAAGAAAGAGAAGAAAAGCTCGCTAACTCGCTCAAAGGTTTCCTTAACCAATATGTTTTAGGTGACAAAGAGGGATTCTTACAGCATGCTGAATCCGAAGCTAAACGACTTTCTGATGCAGCCTTCGGAGTTCATATGCTGCACACTATTGGCTACGTATATTCAAGACAAGCGGCACAAGAGCTTGGAAAGAAAACCATATTCCTAGGGGTACCATTCGTGGCTGAGTGGGTTCGTAATAAGGGACATTTCTGGAAGTCACACATGACTGCTGCAAAAGGTGCTTTTCAGTTACTGCAACTTCAGGAAGAAACCCGTCGGCAATTTAAGATGGATGGTAGCGGCCCTGAAAATGATGTTGCATCACATATACGCTTAAACAAAGACACACTTTTGAACTCGTTGTGGAAACTCAATGTGGTGGACATCGAAGTAACGCTCTTGCATGTTTGCCAAATGGTTTTACGGGAAAACAATGTTGGAAAGGAGGAACTTAAAGCTCGTGCTCTGGCGTTAAAACATCTGGGAAGGATATTTCAGGAGGAAAAGCAGACGCGAAATGGTGGAACTTCAAGAAGGAAAAGTTCTGTTGATACGGATGATGACGGAAGTAGTTCAGATAGCAGTTCTGAAGAGGATTCACCACGACCGCTATCATATAGAACTCCTTTTCTCACTCAGGGTATCGGCAGACTCTTCAGATGCCTATGTAATCCAGCATTCGATGTTGACGATGAAGAGATTGTGTACAAAAGCAACCATGCGTTGAGCACAAAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

407

Amino Acids

45.83

Weight (kDa)

6.34

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77020
fragaria_vesca FvH4_2g15170 FvH4_2g15170
malus_domestica MD05G1010600.v1.1 MD10G1009300.v1.1
prunus_persica Prupe.8G013200_v2.0.a1 Prupe.8G013200_v2.0.a1
pyrus_communis pycom05g00560
rosa_chinensis RchiOBHm_Chr6g0277831
rosa_laevigata RLG00000013265
rosa_rugosa Rorug06G0111800 Rorug06G0111900
rosa_samantha Rh6AG222600 Rh6CG228600 Rh6DG219700
rosa_wichuraiana Rw6G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 604
AccII CGCG 1 cut(s) 949
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 4 cut(s) 48, 566, 735, 1043
AclWI GGATC 3 cut(s) 116, 173, 239
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 3 cut(s) 680, 1044, 1075
AfaI GTAC 5 cut(s) 20, 150, 218, 606, 1142
AflII CTTAAG 1 cut(s) 83
AgsI TTSAA 4 cut(s) 382, 558, 790, 966
AjuI GAANNNNNNNTTGG 2 cut(s) 855, 887
AluBI AGCT 6 cut(s) 161, 341, 412, 494, 577, 893
AluI AGCT 6 cut(s) 161, 341, 412, 494, 577, 893
Alw21I GWGCWC 3 cut(s) 901, 1166, 1212
AlwI GGATC 3 cut(s) 116, 173, 239
AlwNI CAGNNNCTG 1 cut(s) 688
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 2 cut(s) 384, 736
ApeKI GCWGC 4 cut(s) 131, 512, 532, 665
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 2 cut(s) 141, 1006
Asp718I GGTACC 1 cut(s) 604
AspA2I CCTAGG 1 cut(s) 598
AspS9I GGNCC 1 cut(s) 737
AsuHPI GGTGA 5 cut(s) 16, 167, 362, 467, 1026
AvrII CCTAGG 1 cut(s) 598
AxyI CCTNAGG 1 cut(s) 126
BanI GGYRCC 1 cut(s) 604
BauI CACGAG 1 cut(s) 894
Bbv12I GWGCWC 3 cut(s) 901, 1166, 1212
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 4 cut(s) 118, 519, 524, 652
BccI CCATC 2 cut(s) 718, 722
BceAI ACGGC 1 cut(s) 371
BfaI CTAG 3 cut(s) 228, 308, 599
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 6 cut(s) 132, 513, 533, 567, 666, 736
BlnI CCTAGG 1 cut(s) 598
BlsI GCNGC 6 cut(s) 133, 514, 534, 568, 667, 737
BmcAI AGTACT 2 cut(s) 20, 218
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 1 cut(s) 606
BmsI GCATC 5 cut(s) 184, 326, 499, 764, 1085
Bpu10I CCTNAGC 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 550
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 598
BsaWI WCCGGW 2 cut(s) 103, 181
Bse21I CCTNAGG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 3 cut(s) 100, 733, 997
BseJI GATNNNNATC 1 cut(s) 111
BseMII CTCAG 6 cut(s) 45, 46, 140, 351, 609, 1085
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 4 cut(s) 118, 519, 524, 652
BsgI GTGCAG 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 949
Bsh1285I CGRYCG 1 cut(s) 1043
BshFI GGCC 2 cut(s) 386, 738
BshNI GGYRCC 1 cut(s) 604
BsiEI CGRYCG 1 cut(s) 1043
BsiHKAI GWGCWC 3 cut(s) 901, 1166, 1212
BsiSI CCGG 2 cut(s) 104, 182
BslFI GGGAC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 651
BsmI GAATGC 1 cut(s) 1112
BsnI GGCC 2 cut(s) 386, 738
Bsp1286I GDGCHC 3 cut(s) 901, 1166, 1212
Bsp13I TCCGGA 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 1140
Bsp143I GATC 4 cut(s) 121, 178, 202, 244
BspACI CCGC 4 cut(s) 48, 566, 735, 1043
BspANI GGCC 2 cut(s) 386, 738
BspCNI CTCAG 6 cut(s) 45, 46, 139, 352, 610, 1084
BspEI TCCGGA 1 cut(s) 103
BspFNI CGCG 1 cut(s) 949
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 606
BspPI GGATC 3 cut(s) 116, 173, 239
BspT107I GGYRCC 1 cut(s) 604
BspTI CTTAAG 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 1140
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 4 cut(s) 121, 178, 202, 244
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 598
Bst2BI CACGAG 1 cut(s) 894
Bst4CI ACNGT 1 cut(s) 1205
Bst6I CTCTTC 3 cut(s) 1020, 1094, 1125
BstAFI CTTAAG 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 1140
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 414, 480
BstDEI CTNAG 6 cut(s) 32, 54, 126, 360, 618, 1071
BstF5I GGATG 3 cut(s) 100, 733, 997
BstFNI CGCG 1 cut(s) 949
BstKTI GATC 4 cut(s) 124, 181, 205, 247
BstMBI GATC 4 cut(s) 121, 178, 202, 244
BstMCI CGRYCG 1 cut(s) 1043
BstMWI GCNNNNNNNGC 3 cut(s) 260, 323, 674
BstNSI RCATGY 2 cut(s) 482, 842
BstSNI TACGTA 1 cut(s) 550
BstUI CGCG 1 cut(s) 949
BstV1I GCAGC 4 cut(s) 118, 519, 524, 652
Bsu36I CCTNAGG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 386, 738
BtsCI GGATG 3 cut(s) 100, 733, 997
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 414, 480
CaiI CAGNNNCTG 1 cut(s) 688
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 737
CseI GACGC 2 cut(s) 25, 955
Csp6I GTAC 5 cut(s) 19, 149, 217, 605, 1141
CviAII CATG 6 cut(s) 238, 371, 479, 658, 839, 1154
CviQI GTAC 5 cut(s) 19, 149, 217, 605, 1141
DdeI CTNAG 6 cut(s) 32, 54, 126, 360, 618, 1071
DpnI GATC 4 cut(s) 123, 180, 204, 246
DpnII GATC 4 cut(s) 121, 178, 202, 244
Eam1104I CTCTTC 3 cut(s) 1020, 1094, 1125
EarI CTCTTC 3 cut(s) 1020, 1094, 1125
Eco105I TACGTA 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 598
Eco57I CTGAAG 3 cut(s) 680, 1044, 1075
Eco81I CCTNAGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 598
EcoT22I ATGCAT 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 598
FaeI CATG 6 cut(s) 241, 374, 482, 661, 842, 1157
FalI AAGNNNNNCTT 4 cut(s) 420, 452, 768, 800
FaqI GGGAC 1 cut(s) 651
FatI CATG 6 cut(s) 237, 370, 478, 657, 838, 1153
FauNDI CATATG 2 cut(s) 199, 528
Fnu4HI GCNGC 6 cut(s) 132, 513, 533, 567, 666, 736
FokI GGATG 3 cut(s) 87, 740, 1004
Fsp4HI GCNGC 6 cut(s) 132, 513, 533, 567, 666, 736
FspBI CTAG 3 cut(s) 228, 308, 599
GluI GCNGC 6 cut(s) 132, 513, 533, 567, 666, 736
HaeIII GGCC 2 cut(s) 386, 738
HapII CCGG 2 cut(s) 104, 182
HgaI GACGC 2 cut(s) 25, 955
Hin1II CATG 6 cut(s) 241, 374, 482, 661, 842, 1157
HincII GTYRAC 1 cut(s) 1123
HindII GTYRAC 1 cut(s) 1123
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 4 cut(s) 468, 485, 1031, 1086
HpaII CCGG 2 cut(s) 104, 182
HphI GGTGA 5 cut(s) 16, 167, 362, 467, 1026
Hpy166II GTNNAC 3 cut(s) 817, 1123, 1141
Hpy188I TCNGA 9 cut(s) 55, 275, 393, 490, 508, 521, 1012, 1024, 1094
Hpy188III TCNNGA 7 cut(s) 104, 371, 558, 646, 698, 932, 966
Hpy8I GTNNAC 3 cut(s) 817, 1123, 1141
Hpy99I CGWCG 2 cut(s) 714, 1217
HpyAV CCTTC 4 cut(s) 376, 526, 915, 963
HpyCH4III ACNGT 1 cut(s) 1205
HpyCH4IV ACGT 1 cut(s) 549
HpyCH4V TGCA 9 cut(s) 187, 197, 222, 512, 535, 668, 691, 755, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 323, 674
HpyF3I CTNAG 6 cut(s) 32, 54, 126, 360, 618, 1071
HpySE526I ACGT 1 cut(s) 549
Hsp92II CATG 6 cut(s) 241, 374, 482, 661, 842, 1157
Kpn2I TCCGGA 1 cut(s) 103
KpnI GGTACC 1 cut(s) 608
Kzo9I GATC 4 cut(s) 121, 178, 202, 244
Lsp1109I GCAGC 4 cut(s) 118, 519, 524, 652
LweI GCATC 5 cut(s) 184, 326, 499, 764, 1085
MaeI CTAG 3 cut(s) 228, 308, 599
MaeII ACGT 1 cut(s) 549
MaeIII GTNAC 6 cut(s) 37, 350, 455, 651, 684, 826
MalI GATC 4 cut(s) 123, 180, 204, 246
MboI GATC 4 cut(s) 121, 178, 202, 244
MboII GAAGA 6 cut(s) 321, 416, 713, 1037, 1081, 1142
MhlI GDGCHC 3 cut(s) 901, 1166, 1212
MluCI AATT 4 cut(s) 63, 281, 335, 716
MlyI GAGTC 1 cut(s) 1080
MmeI TCCRAC 1 cut(s) 853
Mph1103I ATGCAT 1 cut(s) 199
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 2 cut(s) 141, 1006
MseI TTAA 7 cut(s) 84, 438, 720, 770, 888, 908, 1219
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 2 cut(s) 104, 182
Mva1269I GAATGC 1 cut(s) 1112
MvnI CGCG 1 cut(s) 949
MwoI GCNNNNNNNGC 3 cut(s) 260, 323, 674
NdeI CATATG 2 cut(s) 199, 528
NdeII GATC 4 cut(s) 121, 178, 202, 244
NlaIII CATG 6 cut(s) 241, 374, 482, 661, 842, 1157
NlaIV GGNNCC 1 cut(s) 606
NmuCI GTSAC 4 cut(s) 37, 350, 455, 651
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 2 cut(s) 482, 842
PaeI GCATGC 1 cut(s) 482
PagI TCATGA 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 1122
PctI GAATGC 1 cut(s) 1112
PdmI GAANNNNTTC 2 cut(s) 141, 1006
PfeI GAWTC 3 cut(s) 468, 485, 1031
PkrI GCNGC 6 cut(s) 133, 514, 534, 568, 667, 737
PleI GAGTC 1 cut(s) 1080
PpsI GAGTC 1 cut(s) 1080
Ppu21I YACGTR 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 688
RsaI GTAC 5 cut(s) 20, 150, 218, 606, 1142
RsaNI GTAC 5 cut(s) 19, 149, 217, 605, 1141
SaqAI TTAA 7 cut(s) 84, 438, 720, 770, 888, 908, 1219
SatI GCNGC 6 cut(s) 132, 513, 533, 567, 666, 736
Sau3AI GATC 4 cut(s) 121, 178, 202, 244
Sau96I GGNCC 1 cut(s) 737
ScaI AGTACT 2 cut(s) 20, 218
SchI GAGTC 1 cut(s) 1080
SduI GDGCHC 3 cut(s) 901, 1166, 1212
SfaNI GCATC 5 cut(s) 184, 326, 499, 764, 1085
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SnaBI TACGTA 1 cut(s) 550
SphI GCATGC 1 cut(s) 482
Sse9I AATT 4 cut(s) 63, 281, 335, 716
SsiI CCGC 4 cut(s) 48, 566, 735, 1043
SspMI CTAG 3 cut(s) 228, 308, 599
StyI CCWWGG 1 cut(s) 598
TaaI ACNGT 1 cut(s) 1205
TaiI ACGT 1 cut(s) 552
TaqI TCGA 3 cut(s) 205, 822, 1116
TasI AATT 4 cut(s) 63, 281, 335, 716
TatI WGTACW 3 cut(s) 18, 216, 1140
TauI GCSGC 2 cut(s) 569, 738
TfiI GAWTC 3 cut(s) 468, 485, 1031
Tru1I TTAA 7 cut(s) 84, 438, 720, 770, 888, 908, 1219
Tru9I TTAA 7 cut(s) 84, 438, 720, 770, 888, 908, 1219
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 4 cut(s) 37, 350, 455, 651
TseI GCWGC 4 cut(s) 131, 512, 532, 665
Tsp45I GTSAC 4 cut(s) 37, 350, 455, 651
TspDTI ATGAA 4 cut(s) 89, 359, 515, 1143
TspGWI ACGGA 2 cut(s) 1004, 1014
TspRI CASTG 1 cut(s) 256
Vha464I CTTAAG 1 cut(s) 83
XapI RAATTY 1 cut(s) 63
XceI RCATGY 2 cut(s) 482, 842
XmaJI CCTAGG 1 cut(s) 598
XmnI GAANNNNTTC 2 cut(s) 141, 1006
XspI CTAG 3 cut(s) 228, 308, 599
ZrmI AGTACT 2 cut(s) 20, 218
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.