Rorug06G0111900

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015483
Physical Location & Seq
Forward (+)
15190797 .. 15191924
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0111900.1

Sequence Viewer

Length: 681 bp
ATGGAACCACAAAATCAGCAACCAACTGAGGATGGAGGAAGCAACAAAGCAGTCGGGAGTAGTGCTAACATGCTTTGCAGACGGAGCAGTACCAGGTGGATTCCCACTCCAGATCAGATACGAATCCTCAATGAGCTTTTTTATAGCAAGGGAGTGAGGTCCCCAACCATAGAGCAGAACCACAAGGCTCGGGATAAACGGAGGAAGAAGATCACTTCGAATGTTCCTGTGCCCATGCAAAGATCAGGGTTTGTTGCTGGATCTATTGATCTCAATTTTGGGTCAGGGGTCGGTTGCAATGTTGACCCATATTTCTCCTCATCCTTCATGGAACAACGAGGAGAATATCACCAGGAGATTGAAACCCTTCCACTGTTCCCCATGCACAGTGAAGACGTCTTGGGCAACACGAATACTACTTCTAAGGGAGGTGGCGTAAGCATCAAGCTCCCTCTGACCCGCGACGCGACGCGACGACCCGAAAACGACGACCCGAACGGAACTTCCCCTTCCGGTCATATCACGGCGGCGGACCACCGGCGTTTGCTTCGTCTCGACGACGCCGATGCACCTATGGCCAAGGATCGTCCATGCACAGACCGTGGAGGGAGGTTCGAAGCTTGGAAGCTTAAAGCTTTTCCGGTGTTCCTCGACTTTTCCGGCGACTCCGGCATCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

226

Amino Acids

24.98

Weight (kDa)

8.45

Isoelectric Point (pI)

63.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77020
fragaria_vesca FvH4_2g15170 FvH4_2g15170
malus_domestica MD05G1010600.v1.1 MD10G1009300.v1.1
prunus_persica Prupe.8G013200_v2.0.a1 Prupe.8G013200_v2.0.a1
pyrus_communis pycom05g00560
rosa_chinensis RchiOBHm_Chr6g0277831
rosa_laevigata RLG00000013265
rosa_rugosa Rorug06G0111800 Rorug06G0111900
rosa_samantha Rh6AG222600 Rh6CG228600 Rh6DG219700
rosa_wichuraiana Rw6G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 399
AccII CGCG 3 cut(s) 462, 467, 472
AciI CCGC 3 cut(s) 460, 527, 530
AclWI GGATC 2 cut(s) 268, 591
AcoI YGGCCR 1 cut(s) 576
AcyI GRCGYC 2 cut(s) 396, 561
AfaI GTAC 1 cut(s) 91
AgsI TTSAA 1 cut(s) 362
AjnI CCWGG 2 cut(s) 92, 351
AloI GAACNNNNNNTCC 2 cut(s) 488, 520
AluBI AGCT 5 cut(s) 136, 448, 620, 628, 635
AluI AGCT 5 cut(s) 136, 448, 620, 628, 635
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 2 cut(s) 268, 591
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 1 cut(s) 576
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 159, 532
AsuHPI GGTGA 1 cut(s) 341
AsuII TTCGAA 2 cut(s) 218, 615
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 2 cut(s) 159, 532
BaeGI GKGCMC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 399
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 540
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 2 cut(s) 94, 353
BcoDI GTCTC 1 cut(s) 557
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme1390I CCNGG 2 cut(s) 94, 353
Bme18I GGWCC 2 cut(s) 159, 532
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 159, 532
BmiI GGNNCC 2 cut(s) 6, 161
BmrFI CCNGG 2 cut(s) 94, 353
BmsI GCATC 2 cut(s) 450, 556
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 93
Bpu14I TTCGAA 2 cut(s) 218, 615
BsaBI GATNNNNATC 1 cut(s) 122
BsaHI GRCGYC 2 cut(s) 396, 561
BsaJI CCNNGG 2 cut(s) 579, 601
BsaWI WCCGGW 2 cut(s) 512, 640
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bse118I RCCGGY 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 2 cut(s) 94, 353
BseDI CCNNGG 2 cut(s) 579, 601
BseGI GGATG 2 cut(s) 37, 320
BseJI GATNNNNATC 1 cut(s) 122
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 18
BseRI GAGGAG 2 cut(s) 307, 354
BseSI GKGCMC 1 cut(s) 234
Bsh1236I CGCG 3 cut(s) 462, 467, 472
BshFI GGCC 1 cut(s) 578
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 5 cut(s) 513, 538, 641, 660, 669
BslFI GGGAC 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 557
BsmBI CGTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 189
Bsp119I TTCGAA 2 cut(s) 218, 615
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 6 cut(s) 112, 210, 242, 260, 268, 583
BspACI CCGC 3 cut(s) 460, 527, 530
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 3 cut(s) 462, 467, 472
BspLI GGNNCC 2 cut(s) 6, 161
BspPI GGATC 2 cut(s) 268, 591
BspT104I TTCGAA 2 cut(s) 218, 615
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 537
BssAI RCCGGY 1 cut(s) 537
BssECI CCNNGG 2 cut(s) 579, 601
BssMI GATC 6 cut(s) 112, 210, 242, 260, 268, 583
BssNI GRCGYC 2 cut(s) 396, 561
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 2 cut(s) 94, 353
Bst4CI ACNGT 3 cut(s) 375, 389, 602
BstACI GRCGYC 2 cut(s) 396, 561
BstBI TTCGAA 2 cut(s) 218, 615
BstDEI CTNAG 2 cut(s) 27, 423
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 2 cut(s) 37, 320
BstFNI CGCG 3 cut(s) 462, 467, 472
BstKTI GATC 6 cut(s) 115, 213, 245, 263, 271, 586
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 6 cut(s) 112, 210, 242, 260, 268, 583
BstMWI GCNNNNNNNGC 3 cut(s) 84, 575, 669
BstNI CCWGG 2 cut(s) 94, 353
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 92, 351
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 3 cut(s) 462, 467, 472
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 1 cut(s) 578
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 2 cut(s) 37, 320
BtsIMutI CAGTG 2 cut(s) 371, 394
Cfr10I RCCGGY 1 cut(s) 537
Cfr13I GGNCC 2 cut(s) 159, 532
CseI GACGC 3 cut(s) 473, 478, 569
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 1 cut(s) 90
CviAII CATG 5 cut(s) 70, 235, 328, 382, 591
CviJI RGCY 7 cut(s) 136, 188, 448, 578, 620, 628, 635
CviKI_1 RGCY 7 cut(s) 136, 188, 448, 578, 620, 628, 635
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 27, 423
DpnI GATC 6 cut(s) 114, 212, 244, 262, 270, 585
DpnII GATC 6 cut(s) 112, 210, 242, 260, 268, 583
EaeI YGGCCR 1 cut(s) 576
EciI GGCGGA 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 579
Eco47I GGWCC 2 cut(s) 159, 532
Eco88I CYCGRG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 92, 351
EcoT14I CCWWGG 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 579
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 5 cut(s) 73, 238, 331, 385, 594
FaqI GGGAC 1 cut(s) 145
FatI CATG 5 cut(s) 69, 234, 327, 381, 590
FauI CCCGC 1 cut(s) 467
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 2 cut(s) 44, 307
Fsp4HI GCNGC 1 cut(s) 528
GluI GCNGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 578
HapII CCGG 5 cut(s) 513, 538, 641, 660, 669
HgaI GACGC 3 cut(s) 473, 478, 569
Hin1I GRCGYC 2 cut(s) 396, 561
Hin1II CATG 5 cut(s) 73, 238, 331, 385, 594
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 3 cut(s) 618, 626, 633
HinfI GANTC 3 cut(s) 100, 123, 665
HpaII CCGG 5 cut(s) 513, 538, 641, 660, 669
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 117, 456
Hpy188III TCNNGA 4 cut(s) 55, 110, 191, 554
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 6 cut(s) 467, 472, 477, 491, 560, 563
HpyAV CCTTC 3 cut(s) 334, 377, 519
HpyCH4III ACNGT 3 cut(s) 375, 389, 602
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 6 cut(s) 78, 238, 297, 385, 569, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 575, 669
HpyF3I CTNAG 2 cut(s) 27, 423
HpySE526I ACGT 1 cut(s) 396
Hsp92I GRCGYC 2 cut(s) 396, 561
Hsp92II CATG 5 cut(s) 73, 238, 331, 385, 594
Kzo9I GATC 6 cut(s) 112, 210, 242, 260, 268, 583
LmnI GCTCC 2 cut(s) 84, 453
LweI GCATC 2 cut(s) 450, 556
MabI ACCWGGT 1 cut(s) 92
MaeII ACGT 1 cut(s) 396
MalI GATC 6 cut(s) 114, 212, 244, 262, 270, 585
MboI GATC 6 cut(s) 112, 210, 242, 260, 268, 583
MboII GAAGA 3 cut(s) 217, 220, 404
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 1 cut(s) 274
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 1 cut(s) 659
Mox20I TGGCCA 1 cut(s) 578
MroXI GAANNNNTTC 1 cut(s) 366
MscI TGGCCA 1 cut(s) 578
MseI TTAA 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 578
MspI CCGG 5 cut(s) 513, 538, 641, 660, 669
MspR9I CCNGG 2 cut(s) 94, 353
MvaI CCWGG 2 cut(s) 94, 353
MvnI CGCG 3 cut(s) 462, 467, 472
MwoI GCNNNNNNNGC 3 cut(s) 84, 575, 669
NdeII GATC 6 cut(s) 112, 210, 242, 260, 268, 583
NlaIII CATG 5 cut(s) 73, 238, 331, 385, 594
NlaIV GGNNCC 2 cut(s) 6, 161
NspI RCATGY 1 cut(s) 73
NspV TTCGAA 2 cut(s) 218, 615
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 100, 123
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 659
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 92, 351
PspGI CCWGG 2 cut(s) 92, 351
PspN4I GGNNCC 2 cut(s) 6, 161
PspPI GGNCC 2 cut(s) 159, 532
PspPPI RGGWCCY 1 cut(s) 159
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 6 cut(s) 112, 210, 242, 260, 268, 583
Sau96I GGNCC 2 cut(s) 159, 532
SchI GAGTC 1 cut(s) 659
ScrFI CCNGG 2 cut(s) 94, 353
SduI GDGCHC 1 cut(s) 234
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 2 cut(s) 450, 556
SfuI TTCGAA 2 cut(s) 218, 615
SgrAI CRCCGGYG 1 cut(s) 537
SinI GGWCC 2 cut(s) 159, 532
Sse9I AATT 1 cut(s) 274
SsiI CCGC 3 cut(s) 460, 527, 530
StyD4I CCNGG 2 cut(s) 92, 351
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 3 cut(s) 375, 389, 602
TaiI ACGT 1 cut(s) 399
TaqI TCGA 4 cut(s) 218, 555, 615, 651
TasI AATT 1 cut(s) 274
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 2 cut(s) 378, 394
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 3 cut(s) 97, 214, 513
TspRI CASTG 2 cut(s) 378, 394
VpaK11BI GGWCC 2 cut(s) 159, 532
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 366
ZraI GACGTC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.