FvH4_2g15170

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015483
Physical Location & Seq
Forward (+)
13293974 .. 13298738
4765 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g15170.t1

Sequence Viewer

Length: 1149 bp
ATGGTCAAAGAAACTGAGTACTATGATGCACTCAATGTCAGTCCCTCGGCTTCGGAGGAGGAAATTCGCAAGGCTTATTATCTCAAGGCAAGGCAAGTACATCCGGATAAAAATCCAAACGATCCTCAAGCTGCTGAAAGATTTCAGGTACTTGGAGAAGCTTACCAAGTTTTGAGTGATCCAGTGCAAAGAGATGCATATGATCGAAATGGAAAACATTGCATACCTAGGGAAACCATGCTTGACCCCACAGCTGTCTTTGCTTTTCTTTTCGGAAGTGAACTATTTGAGGATTACATAGGACATCTAGCTGTAGCATCAATGGCTTCTTCTCAATTAGCTGGTGAAGGTGACAACCCTGAGAAAGTACACGATAAATTGAAGGCTGTCCAGAAAGAAAGAGAAGAAAAGCTAGCTAAAGCACTCAAAGATCTTCTTAATCAGTATGTAAGAGGTGATAAAGAGGGGTTCTTACATCATGCTGAATCTGAAGCTAGAAGACTTTCTGATGCAGCCTTTGGGGTTGATATGCTACACACTATTGGCTATGTATATTCAAGACAAGCAGCACAAGAGCTTGGAAAGAAAACCATATACCTAGGGGTACCATTTTTGGCTGAGTGGGTACGGAATAAGGGACATTTCTGGAAGTCACAGATGACTGCTGCTAAAGGTGCATTTCAGCTGATGCAACTTCAGGAAGAAATCCGCCGGCAGTTTAAAGTGGATGGTAGTGGCCCTGAACATGATGTTGAATCACATATAAGCTTGAACAAAGACACATTGTTGAATTCATTGTGGAAATTGAATGTGGTTGACATTGAAGTAACTCTCGTTCATGTTTGCCAAATGGTGCTACGGGAAACTAATGTTCGAAAGGATGAACTTAGAGCTCGTGCTTTGGCACTAAAGCTGCTTGGAAAGATATTTCAGGAGGAAAAGAATGGTGCAGCTTCAAAACAGAAAGGTGATGCTGACACAGACGATGATGATGGAAGTAGTTCTGATAGCAGTAGTGGAGAGGGTTCACCACGACGGCTGTCCTATAGAACTCCTTTTCTCACTCAGGGCATTGGCAGGCTCTTCAGATGCCTCTGCAATCCAGCATTTGATGTTGATGATGAAGAGATTGTGTACAAAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

383

Amino Acids

43.06

Weight (kDa)

5.75

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 68 9e-25 DnaJ domain
DnaJ-X PF14308 131 - 320 3e-52 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77020
fragaria_vesca FvH4_2g15170 FvH4_2g15170
malus_domestica MD05G1010600.v1.1 MD10G1009300.v1.1
prunus_persica Prupe.8G013200_v2.0.a1 Prupe.8G013200_v2.0.a1
pyrus_communis pycom05g00560
rosa_chinensis RchiOBHm_Chr6g0277831
rosa_laevigata RLG00000013265
rosa_rugosa Rorug06G0111800 Rorug06G0111900
rosa_samantha Rh6AG222600 Rh6CG228600 Rh6DG219700
rosa_wichuraiana Rw6G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 604
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 1 cut(s) 709
AclWI GGATC 2 cut(s) 116, 173
AcsI RAATTY 2 cut(s) 63, 790
AcuI CTGAAG 3 cut(s) 510, 680, 1069
AfaI GTAC 7 cut(s) 20, 99, 150, 369, 606, 627, 1136
AgsI TTSAA 8 cut(s) 382, 558, 755, 772, 790, 808, 824, 957
Alw21I GWGCWC 1 cut(s) 895
AlwI GGATC 2 cut(s) 116, 173
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 1 cut(s) 736
ApeKI GCWGC 6 cut(s) 131, 512, 566, 665, 913, 950
ApoI RAATTY 2 cut(s) 63, 790
Asp700I GAANNNNTTC 3 cut(s) 141, 502, 1000
Asp718I GGTACC 1 cut(s) 604
AspA2I CCTAGG 2 cut(s) 227, 598
AspS9I GGNCC 1 cut(s) 737
AsuHPI GGTGA 5 cut(s) 356, 362, 467, 980, 1020
AsuII TTCGAA 1 cut(s) 874
AsuNHI GCTAGC 1 cut(s) 412
AvrII CCTAGG 2 cut(s) 227, 598
BanI GGYRCC 1 cut(s) 604
BanII GRGCYC 1 cut(s) 895
BauI CACGAG 1 cut(s) 894
BbsI GAAGAC 1 cut(s) 505
Bbv12I GWGCWC 1 cut(s) 895
BbvI GCAGC 6 cut(s) 118, 524, 578, 652, 900, 962
BccI CCATC 2 cut(s) 722, 986
BceAI ACGGC 1 cut(s) 1052
BfaI CTAG 5 cut(s) 228, 308, 413, 495, 599
BfmI CTRYAG 2 cut(s) 312, 1045
BglII AGATCT 1 cut(s) 430
BisI GCNGC 6 cut(s) 132, 513, 567, 666, 914, 951
BlnI CCTAGG 2 cut(s) 227, 598
BlsI GCNGC 6 cut(s) 133, 514, 568, 667, 915, 952
BmcAI AGTACT 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 1 cut(s) 606
BmsI GCATC 7 cut(s) 16, 184, 326, 499, 678, 961, 1079
BmtI GCTAGC 1 cut(s) 416
BoxI GACNNNNGTC 1 cut(s) 1039
BpiI GAAGAC 1 cut(s) 505
Bpu14I TTCGAA 1 cut(s) 874
BpuEI CTTGAG 2 cut(s) 68, 111
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 45, 227, 598
BsaWI WCCGGW 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 711
Bse1I ACTGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 3 cut(s) 45, 227, 598
BseGI GGATG 3 cut(s) 100, 733, 886
BseJI GATNNNNATC 1 cut(s) 111
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 4 cut(s) 6, 351, 609, 1079
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 6 cut(s) 118, 524, 578, 652, 900, 962
BsgI GTGCAG 1 cut(s) 969
BshFI GGCC 1 cut(s) 738
BshNI GGYRCC 1 cut(s) 604
BsiHKAI GWGCWC 1 cut(s) 895
BsiSI CCGG 2 cut(s) 104, 712
BslFI GGGAC 2 cut(s) 27, 651
BsmFI GGGAC 2 cut(s) 27, 651
BsnI GGCC 1 cut(s) 738
Bsp119I TTCGAA 1 cut(s) 874
Bsp1286I GDGCHC 1 cut(s) 895
Bsp13I TCCGGA 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 1134
Bsp143I GATC 4 cut(s) 121, 178, 202, 430
BspACI CCGC 1 cut(s) 709
BspANI GGCC 1 cut(s) 738
BspCNI CTCAG 4 cut(s) 7, 352, 610, 1078
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 606
BspOI GCTAGC 1 cut(s) 416
BspPI GGATC 2 cut(s) 116, 173
BspQI GCTCTTC 1 cut(s) 1088
BspT104I TTCGAA 1 cut(s) 874
BspT107I GGYRCC 1 cut(s) 604
BsrDI GCAATG 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 711
BsrGI TGTACA 1 cut(s) 1134
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 711
BssECI CCNNGG 3 cut(s) 45, 227, 598
BssMI GATC 4 cut(s) 121, 178, 202, 430
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 2 cut(s) 227, 598
Bst2BI CACGAG 1 cut(s) 894
Bst6I CTCTTC 2 cut(s) 1088, 1119
BstAUI TGTACA 1 cut(s) 1134
BstBI TTCGAA 1 cut(s) 874
BstC8I GCNNGC 3 cut(s) 414, 713, 1079
BstDEI CTNAG 5 cut(s) 15, 360, 618, 887, 1065
BstF5I GGATG 3 cut(s) 100, 733, 886
BstKTI GATC 4 cut(s) 124, 181, 205, 433
BstMBI GATC 4 cut(s) 121, 178, 202, 430
BstMWI GCNNNNNNNGC 3 cut(s) 260, 323, 674
BstPAI GACNNNNGTC 1 cut(s) 1039
BstSFI CTRYAG 2 cut(s) 312, 1045
BstV1I GCAGC 6 cut(s) 118, 524, 578, 652, 900, 962
BstV2I GAAGAC 1 cut(s) 505
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 1 cut(s) 738
BtsCI GGATG 3 cut(s) 100, 733, 886
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 3 cut(s) 414, 713, 1079
Cfr10I RCCGGY 1 cut(s) 711
Cfr13I GGNCC 1 cut(s) 737
Csp6I GTAC 7 cut(s) 19, 98, 149, 368, 605, 626, 1135
CviAII CATG 4 cut(s) 238, 479, 746, 839
CviQI GTAC 7 cut(s) 19, 98, 149, 368, 605, 626, 1135
DdeI CTNAG 5 cut(s) 15, 360, 618, 887, 1065
DpnI GATC 4 cut(s) 123, 180, 204, 432
DpnII GATC 4 cut(s) 121, 178, 202, 430
DraI TTTAAA 1 cut(s) 721
Eam1104I CTCTTC 2 cut(s) 1088, 1119
EarI CTCTTC 2 cut(s) 1088, 1119
EciI GGCGGA 1 cut(s) 698
Ecl136II GAGCTC 1 cut(s) 893
Eco130I CCWWGG 2 cut(s) 227, 598
Eco24I GRGCYC 1 cut(s) 895
Eco53kI GAGCTC 1 cut(s) 893
Eco57I CTGAAG 3 cut(s) 510, 680, 1069
EcoICRI GAGCTC 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 790
EcoT14I CCWWGG 2 cut(s) 227, 598
EcoT22I ATGCAT 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 895
ErhI CCWWGG 2 cut(s) 227, 598
FaeI CATG 4 cut(s) 241, 482, 749, 842
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 2 cut(s) 27, 651
FatI CATG 4 cut(s) 237, 478, 745, 838
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 6 cut(s) 132, 513, 567, 666, 914, 951
FokI GGATG 3 cut(s) 87, 740, 893
FriOI GRGCYC 1 cut(s) 895
Fsp4HI GCNGC 6 cut(s) 132, 513, 567, 666, 914, 951
FspBI CTAG 5 cut(s) 228, 308, 413, 495, 599
GluI GCNGC 6 cut(s) 132, 513, 567, 666, 914, 951
HaeIII GGCC 1 cut(s) 738
HapII CCGG 2 cut(s) 104, 712
Hin1II CATG 4 cut(s) 241, 482, 749, 842
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 2 cut(s) 159, 766
HinfI GANTC 2 cut(s) 485, 755
HpaII CCGG 2 cut(s) 104, 712
HphI GGTGA 5 cut(s) 356, 362, 467, 980, 1020
Hpy166II GTNNAC 5 cut(s) 281, 370, 817, 1028, 1135
Hpy188I TCNGA 6 cut(s) 55, 275, 490, 508, 1006, 1088
Hpy188III TCNNGA 6 cut(s) 104, 391, 558, 646, 698, 932
Hpy8I GTNNAC 5 cut(s) 281, 370, 817, 1028, 1135
Hpy99I CGWCG 1 cut(s) 1038
HpyAV CCTTC 2 cut(s) 341, 376
HpyCH4V TGCA 9 cut(s) 29, 187, 197, 222, 512, 677, 691, 950, 1098
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 323, 674
HpyF3I CTNAG 5 cut(s) 15, 360, 618, 887, 1065
Hsp92II CATG 4 cut(s) 241, 482, 749, 842
Kpn2I TCCGGA 1 cut(s) 103
KpnI GGTACC 1 cut(s) 608
KroI GCCGGC 1 cut(s) 711
KroNI GCCGGC 1 cut(s) 713
Kzo9I GATC 4 cut(s) 121, 178, 202, 430
LguI GCTCTTC 1 cut(s) 1088
Lsp1109I GCAGC 6 cut(s) 118, 524, 578, 652, 900, 962
LweI GCATC 7 cut(s) 16, 184, 326, 499, 678, 961, 1079
MaeI CTAG 5 cut(s) 228, 308, 413, 495, 599
MaeIII GTNAC 3 cut(s) 350, 651, 826
MalI GATC 4 cut(s) 123, 180, 204, 432
MboI GATC 4 cut(s) 121, 178, 202, 430
MboII GAAGA 7 cut(s) 321, 416, 425, 510, 713, 1075, 1136
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 895
MluCI AATT 5 cut(s) 63, 335, 377, 790, 803
Mph1103I ATGCAT 1 cut(s) 199
MroI TCCGGA 1 cut(s) 103
MroNI GCCGGC 1 cut(s) 711
MroXI GAANNNNTTC 3 cut(s) 141, 502, 1000
MseI TTAA 2 cut(s) 438, 720
MspA1I CMGCKG 2 cut(s) 254, 685
MspI CCGG 2 cut(s) 104, 712
MwoI GCNNNNNNNGC 3 cut(s) 260, 323, 674
NaeI GCCGGC 1 cut(s) 713
NdeI CATATG 1 cut(s) 199
NdeII GATC 4 cut(s) 121, 178, 202, 430
NgoMIV GCCGGC 1 cut(s) 711
NheI GCTAGC 1 cut(s) 412
NlaIII CATG 4 cut(s) 241, 482, 749, 842
NlaIV GGNNCC 1 cut(s) 606
NmeAIII GCCGAG 1 cut(s) 26
NmuCI GTSAC 2 cut(s) 350, 651
NsiI ATGCAT 1 cut(s) 199
NspV TTCGAA 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 1088
PdiI GCCGGC 1 cut(s) 713
PdmI GAANNNNTTC 3 cut(s) 141, 502, 1000
PfeI GAWTC 2 cut(s) 485, 755
PkrI GCNGC 6 cut(s) 133, 514, 568, 667, 915, 952
PshAI GACNNNNGTC 1 cut(s) 1039
Psp124BI GAGCTC 1 cut(s) 895
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 1 cut(s) 737
PsrI GAACNNNNNNTAC 2 cut(s) 819, 851
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 2 cut(s) 254, 685
RsaI GTAC 7 cut(s) 20, 99, 150, 369, 606, 627, 1136
RsaNI GTAC 7 cut(s) 19, 98, 149, 368, 605, 626, 1135
SacI GAGCTC 1 cut(s) 895
SapI GCTCTTC 1 cut(s) 1088
SaqAI TTAA 2 cut(s) 438, 720
SatI GCNGC 6 cut(s) 132, 513, 567, 666, 914, 951
Sau3AI GATC 4 cut(s) 121, 178, 202, 430
Sau96I GGNCC 1 cut(s) 737
ScaI AGTACT 1 cut(s) 20
SduI GDGCHC 1 cut(s) 895
SfaNI GCATC 7 cut(s) 16, 184, 326, 499, 678, 961, 1079
SfcI CTRYAG 2 cut(s) 312, 1045
SfuI TTCGAA 1 cut(s) 874
SmlI CTYRAG 2 cut(s) 83, 126
SmoI CTYRAG 2 cut(s) 83, 126
Sse9I AATT 5 cut(s) 63, 335, 377, 790, 803
SsiI CCGC 1 cut(s) 709
SspMI CTAG 5 cut(s) 228, 308, 413, 495, 599
SstI GAGCTC 1 cut(s) 895
StyI CCWWGG 2 cut(s) 227, 598
TaqI TCGA 2 cut(s) 205, 874
TasI AATT 5 cut(s) 63, 335, 377, 790, 803
TatI WGTACW 4 cut(s) 18, 97, 367, 1134
TfiI GAWTC 2 cut(s) 485, 755
Tru1I TTAA 2 cut(s) 438, 720
Tru9I TTAA 2 cut(s) 438, 720
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 2 cut(s) 350, 651
TseI GCWGC 6 cut(s) 131, 512, 566, 665, 913, 950
Tsp45I GTSAC 2 cut(s) 350, 651
TspDTI ATGAA 4 cut(s) 783, 827, 897, 1137
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 1 cut(s) 189
XapI RAATTY 2 cut(s) 63, 790
XmaJI CCTAGG 2 cut(s) 227, 598
XmnI GAANNNNTTC 3 cut(s) 141, 502, 1000
XspI CTAG 5 cut(s) 228, 308, 413, 495, 599
ZrmI AGTACT 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.