Rw6G019440

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015483
Physical Location & Seq
Forward (+)
38802355 .. 38807013
4659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019440.1

Sequence Viewer

Length: 1155 bp
ATGGTTAAAGAAACTGAGTACTATGATGCACTCAATGTCAGTCCCTCGGCTTCGGAAGAGGAAATTCGCAAGGCTTATTATCTCAAGGCAAGGCAAGTACATCCGGATAAAAATCCAAATGATCCTCAAGCTGCTGAAAGATTTCAGGTACTTGGGGAAGCCTACCAAGTTTTGAGTGATCCACTGCAAAGAGAAGCATATGATCGAAATGGAAAGCACTGCATATCTAGGGATACAATGCTTGACCCCACAGCTGTCTTTGCTTTTCTTTTCGGAAGTGAACTATTTGAGGATTACATAGGGCATCTAGCTGTAGCATCAATGGCTTCTTCTCAATTAGCTGGTGAAGGTGACAACCCTGAGAAAGTACATGATAAATTGAAGGCTGTCCAGAAAGAAAGAGAAGAAAAGCTAGCTAAGGCACTCAAAGATCTTCTTAATCAGTATGTGCGAGGTGATAAAGAAGGGTTCTTACTTCATGCTGAATCTGAAGCTAGAAGACTTTCTAATGCAGCCTTTGGAATTGATATGCTACACACTATTGGCTATGTCTATTCAAGACAAGCAGCACAAGAGCTTGGAAAGAAAACCATATACCTAGGGGTACCATTTTTGGCTGAGTGGGTGCGCAACAAGGGACATTTCTGGAAGTCACAAATGACCGCTGCAAAAGGTGCATTCCAGCTGATGCAACTTCAAGAAGAAATCCGTCGGCAGTTTAAAGTGGATGGTAGTGGCCCTGAACATGATGTTGAATCACATATACGCTTAAACAAAGACACATTATTGAACTCATTGTGGAAATTGAATGTGGTTGACATTGAAGTAACTCTCGTACATGTTTGTCAAATGGTGCTACGGGAAACTAATGTTCGAAAGGATGAACTTAGAGCTCGTGCTTTGGCACTAAAGCTTCTTGGAAAGATATTTCAGGAGGAAAAGCAGACACAAAATGGTGCAACTTCAAAACGGAAAGGTGATGCTGACACAGACGATGATGATGGAACTAGTTCTGATAGTAGTGGAGAGGATTCACCACAACGGCTTTCATATAGAACTCCTTTTCTCACTCAGGGCATTGGAAGACTCTTCAGATGCCTCTGTAATCCAGCATATGATGTTGATGATGACGAGATTGTGTACAAAGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

384

Amino Acids

43.5

Weight (kDa)

5.78

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 68 1e-24 DnaJ domain
DnaJ-X PF14308 131 - 324 7.2e-53 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77020
fragaria_vesca FvH4_2g15170 FvH4_2g15170
malus_domestica MD05G1010600.v1.1 MD10G1009300.v1.1
prunus_persica Prupe.8G013200_v2.0.a1 Prupe.8G013200_v2.0.a1
pyrus_communis pycom05g00560
rosa_chinensis RchiOBHm_Chr6g0277831
rosa_laevigata RLG00000013265
rosa_rugosa Rorug06G0111800 Rorug06G0111900
rosa_samantha Rh6AG222600 Rh6CG228600 Rh6DG219700
rosa_wichuraiana Rw6G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 629
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 604
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 1 cut(s) 663
AclWI GGATC 2 cut(s) 116, 173
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 510, 1075
AfaI GTAC 7 cut(s) 20, 99, 150, 369, 606, 837, 1142
AflIII ACRYGT 1 cut(s) 838
AgsI TTSAA 8 cut(s) 382, 558, 698, 755, 790, 808, 824, 966
AhlI ACTAGT 1 cut(s) 1007
Alw21I GWGCWC 1 cut(s) 895
AlwI GGATC 2 cut(s) 116, 173
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 1 cut(s) 736
ApeKI GCWGC 4 cut(s) 131, 512, 566, 665
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 3 cut(s) 141, 502, 1009
Asp718I GGTACC 1 cut(s) 604
AspA2I CCTAGG 1 cut(s) 598
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 737
AsuHPI GGTGA 5 cut(s) 356, 362, 467, 989, 1026
AsuII TTCGAA 1 cut(s) 874
AsuNHI GCTAGC 1 cut(s) 412
AvrII CCTAGG 1 cut(s) 598
BanI GGYRCC 1 cut(s) 604
BanII GRGCYC 1 cut(s) 895
BarI GAAGNNNNNNTAC 2 cut(s) 456, 488
BauI CACGAG 1 cut(s) 894
BbsI GAAGAC 2 cut(s) 505, 1090
Bbv12I GWGCWC 1 cut(s) 895
BbvI GCAGC 4 cut(s) 118, 524, 578, 652
BccI CCATC 2 cut(s) 722, 995
BceAI ACGGC 1 cut(s) 1058
BciVI GTATCC 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 1007
BfaI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
BfmI CTRYAG 1 cut(s) 312
BfuI GTATCC 1 cut(s) 226
BglII AGATCT 1 cut(s) 430
BisI GCNGC 4 cut(s) 132, 513, 567, 666
BlnI CCTAGG 1 cut(s) 598
BlsI GCNGC 4 cut(s) 133, 514, 568, 667
BmcAI AGTACT 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 1 cut(s) 606
BmsI GCATC 6 cut(s) 16, 313, 326, 678, 970, 1085
BmtI GCTAGC 1 cut(s) 416
BpiI GAAGAC 2 cut(s) 505, 1090
Bpu10I CCTNAGC 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 874
BpuEI CTTGAG 2 cut(s) 68, 111
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 45, 598
BsaWI WCCGGW 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 45, 598
BseGI GGATG 3 cut(s) 100, 733, 886
BseJI GATNNNNATC 1 cut(s) 111
BseMII CTCAG 4 cut(s) 6, 351, 609, 1085
BseXI GCAGC 4 cut(s) 118, 524, 578, 652
BshFI GGCC 1 cut(s) 738
BshNI GGYRCC 1 cut(s) 604
BsiHKAI GWGCWC 1 cut(s) 895
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 2 cut(s) 27, 651
BsmFI GGGAC 2 cut(s) 27, 651
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 1 cut(s) 738
Bsp119I TTCGAA 1 cut(s) 874
Bsp1286I GDGCHC 1 cut(s) 895
Bsp13I TCCGGA 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 1140
Bsp143I GATC 4 cut(s) 121, 178, 202, 430
BspACI CCGC 1 cut(s) 663
BspANI GGCC 1 cut(s) 738
BspCNI CTCAG 4 cut(s) 7, 352, 610, 1084
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 606
BspOI GCTAGC 1 cut(s) 416
BspPI GGATC 2 cut(s) 116, 173
BspT104I TTCGAA 1 cut(s) 874
BspT107I GGYRCC 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 1140
BssECI CCNNGG 2 cut(s) 45, 598
BssMI GATC 4 cut(s) 121, 178, 202, 430
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 598
Bst2BI CACGAG 1 cut(s) 894
Bst6I CTCTTC 2 cut(s) 51, 1094
BstAPI GCANNNNNTGC 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 1140
BstBI TTCGAA 1 cut(s) 874
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 6 cut(s) 15, 360, 417, 618, 887, 1071
BstF5I GGATG 3 cut(s) 100, 733, 886
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 4 cut(s) 124, 181, 205, 433
BstMBI GATC 4 cut(s) 121, 178, 202, 430
BstMWI GCNNNNNNNGC 3 cut(s) 260, 323, 674
BstNSI RCATGY 1 cut(s) 842
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 4 cut(s) 118, 524, 578, 652
BstV2I GAAGAC 2 cut(s) 505, 1090
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 738
BtsCI GGATG 3 cut(s) 100, 733, 886
BtsI GCAGTG 2 cut(s) 182, 217
BtsIMutI CAGTG 2 cut(s) 182, 217
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 1 cut(s) 630
Cfr13I GGNCC 1 cut(s) 737
Csp6I GTAC 7 cut(s) 19, 98, 149, 368, 605, 836, 1141
CviAII CATG 4 cut(s) 371, 479, 746, 839
CviQI GTAC 7 cut(s) 19, 98, 149, 368, 605, 836, 1141
DdeI CTNAG 6 cut(s) 15, 360, 417, 618, 887, 1071
DpnI GATC 4 cut(s) 123, 180, 204, 432
DpnII GATC 4 cut(s) 121, 178, 202, 430
DraI TTTAAA 1 cut(s) 721
Eam1104I CTCTTC 2 cut(s) 51, 1094
EarI CTCTTC 2 cut(s) 51, 1094
Ecl136II GAGCTC 1 cut(s) 893
Eco130I CCWWGG 1 cut(s) 598
Eco24I GRGCYC 1 cut(s) 895
Eco53kI GAGCTC 1 cut(s) 893
Eco57I CTGAAG 2 cut(s) 510, 1075
EcoICRI GAGCTC 1 cut(s) 893
EcoT14I CCWWGG 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 895
ErhI CCWWGG 1 cut(s) 598
FaeI CATG 4 cut(s) 374, 482, 749, 842
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 2 cut(s) 27, 651
FatI CATG 4 cut(s) 370, 478, 745, 838
FauNDI CATATG 2 cut(s) 199, 1114
Fnu4HI GCNGC 4 cut(s) 132, 513, 567, 666
FokI GGATG 3 cut(s) 87, 740, 893
FriOI GRGCYC 1 cut(s) 895
Fsp4HI GCNGC 4 cut(s) 132, 513, 567, 666
FspBI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
FspI TGCGCA 1 cut(s) 629
GlaI GCGC 1 cut(s) 629
GluI GCNGC 4 cut(s) 132, 513, 567, 666
HaeIII GGCC 1 cut(s) 738
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 630
Hin1II CATG 4 cut(s) 374, 482, 749, 842
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 4 cut(s) 485, 755, 1031, 1086
HpaII CCGG 1 cut(s) 104
HphI GGTGA 5 cut(s) 356, 362, 467, 989, 1026
Hpy166II GTNNAC 3 cut(s) 281, 817, 1141
Hpy188I TCNGA 5 cut(s) 55, 275, 490, 1015, 1094
Hpy188III TCNNGA 6 cut(s) 104, 391, 558, 646, 698, 932
Hpy8I GTNNAC 3 cut(s) 281, 817, 1141
Hpy99I CGWCG 1 cut(s) 714
HpyAV CCTTC 3 cut(s) 341, 376, 458
HpyCH4V TGCA 8 cut(s) 29, 187, 222, 512, 668, 677, 691, 959
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 323, 674
HpyF3I CTNAG 6 cut(s) 15, 360, 417, 618, 887, 1071
Hsp92II CATG 4 cut(s) 374, 482, 749, 842
HspAI GCGC 1 cut(s) 628
Kpn2I TCCGGA 1 cut(s) 103
KpnI GGTACC 1 cut(s) 608
Kzo9I GATC 4 cut(s) 121, 178, 202, 430
Lsp1109I GCAGC 4 cut(s) 118, 524, 578, 652
LweI GCATC 6 cut(s) 16, 313, 326, 678, 970, 1085
MaeI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
MaeIII GTNAC 3 cut(s) 350, 651, 826
MalI GATC 4 cut(s) 123, 180, 204, 432
MboI GATC 4 cut(s) 121, 178, 202, 430
MboII GAAGA 8 cut(s) 68, 321, 416, 425, 510, 713, 1081, 1095
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 895
MluCI AATT 5 cut(s) 63, 335, 377, 522, 803
MlyI GAGTC 1 cut(s) 1080
MnlI CCTC 8 cut(s) 52, 55, 135, 283, 446, 928, 1021, 1109
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 3 cut(s) 141, 502, 1009
MseI TTAA 4 cut(s) 6, 438, 720, 770
MspA1I CMGCKG 3 cut(s) 254, 665, 685
MspI CCGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 677
MwoI GCNNNNNNNGC 3 cut(s) 260, 323, 674
NdeI CATATG 2 cut(s) 199, 1114
NdeII GATC 4 cut(s) 121, 178, 202, 430
NheI GCTAGC 1 cut(s) 412
NlaIII CATG 4 cut(s) 374, 482, 749, 842
NlaIV GGNNCC 1 cut(s) 606
NmeAIII GCCGAG 1 cut(s) 26
NmuCI GTSAC 2 cut(s) 350, 651
NsbI TGCGCA 1 cut(s) 629
NspI RCATGY 1 cut(s) 842
NspV TTCGAA 1 cut(s) 874
PciI ACATGT 1 cut(s) 838
PctI GAATGC 1 cut(s) 677
PdmI GAANNNNTTC 3 cut(s) 141, 502, 1009
PfeI GAWTC 3 cut(s) 485, 755, 1031
PkrI GCNGC 4 cut(s) 133, 514, 568, 667
PleI GAGTC 1 cut(s) 1080
PpsI GAGTC 1 cut(s) 1080
PscI ACATGT 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 895
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 1 cut(s) 737
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 2 cut(s) 254, 685
RsaI GTAC 7 cut(s) 20, 99, 150, 369, 606, 837, 1142
RsaNI GTAC 7 cut(s) 19, 98, 149, 368, 605, 836, 1141
SacI GAGCTC 1 cut(s) 895
SaqAI TTAA 4 cut(s) 6, 438, 720, 770
SatI GCNGC 4 cut(s) 132, 513, 567, 666
Sau3AI GATC 4 cut(s) 121, 178, 202, 430
Sau96I GGNCC 1 cut(s) 737
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 1 cut(s) 1080
SduI GDGCHC 1 cut(s) 895
SfaNI GCATC 6 cut(s) 16, 313, 326, 678, 970, 1085
SfcI CTRYAG 1 cut(s) 312
SfuI TTCGAA 1 cut(s) 874
SmlI CTYRAG 2 cut(s) 83, 126
SmoI CTYRAG 2 cut(s) 83, 126
SpeI ACTAGT 1 cut(s) 1007
Sse9I AATT 5 cut(s) 63, 335, 377, 522, 803
SsiI CCGC 1 cut(s) 663
SspMI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
SstI GAGCTC 1 cut(s) 895
StyI CCWWGG 1 cut(s) 598
TaqI TCGA 2 cut(s) 205, 874
TasI AATT 5 cut(s) 63, 335, 377, 522, 803
TatI WGTACW 4 cut(s) 18, 97, 367, 1140
TfiI GAWTC 3 cut(s) 485, 755, 1031
Tru1I TTAA 4 cut(s) 6, 438, 720, 770
Tru9I TTAA 4 cut(s) 6, 438, 720, 770
TscAI CASTG 2 cut(s) 189, 224
TseFI GTSAC 2 cut(s) 350, 651
TseI GCWGC 4 cut(s) 131, 512, 566, 665
Tsp45I GTSAC 2 cut(s) 350, 651
TspDTI ATGAA 3 cut(s) 467, 897, 1038
TspGWI ACGGA 2 cut(s) 698, 985
TspRI CASTG 2 cut(s) 189, 224
XapI RAATTY 1 cut(s) 63
XceI RCATGY 1 cut(s) 842
XmaJI CCTAGG 1 cut(s) 598
XmnI GAANNNNTTC 3 cut(s) 141, 502, 1009
XspI CTAG 6 cut(s) 228, 308, 413, 495, 599, 1008
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.