MD05G1010600.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0015483
Physical Location & Seq
Reverse (-)
2132787 .. 2136605
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1010600.v1.1.491

Sequence Viewer

Length: 1152 bp
ATGGTGAAAGAAACTGAGTACTATGATGTCCTCAGCGTCACTCCCTCCGCTTCTGAGGAGGAAATTCGCAAGGCTTATTATCTTAAGGCAAGGCAAGTTCATCCGGATAAAAATCCAAACGATCCTCAGGCTGCCGAAAGATTTCAGGTACTTGGTGAAGCTTATCAGGTTTTGAGTGATCCGGTGCAAAGAGATGCATATGATCGAAATGGAAAGTACTGCATATCTAGGGAAACCATGCTTGATCCCACAGCTGTCTTCGCTTTCCTTTTCGGAAGTGAATTATTTGAGGACTACATAGGACATCTAGCAGTAGCATCAATGGCTTCTTCTCAATTAGCTGGTGAAGGTGACAGCCCTGAGAAAGTTCATGATAAATTGAAGGCCGTTCAGAAAGAAAGAGAAGAAAAGCTTGCTAACTCGCTCAAAGGTTTCCTTAACCAATATGTTTTAGGTGACAAAGAGGGATTCTTACAGCATGCTGAATCCGAAGCTAAACGACTTTCTGATGCAGCCTTCGGAGTTGATATGCTGCACACTATTGGCTACGTATATTCAAGACAAGCAGCACAAGAGCTTGGAAAGAAAACCATATTCCTAGGGGTACCATTCGTGGCTGAGTGGGTTCGTAATAAGGGACATTTCTGGAAGTCACAGATGACTGCTGCAAAAGGTGCTTTTCAGTTACTGCAACTTCAGGAAGAAACCCGTCGGCAATTTAAGAAGGATGGTAGTGGCCCTGAAAATGACGTTGAATCACATATACGCTTAAACAAAGACACACTTTTGAACTCGCTGTGGAAACTCAATGTGGTGGACATCGAAGTAACGCTCTTGCATGTTTGCCAAATGGTTTTACGGGAAACTAATGTTAGAAGGGAGGAACTTAAAGCTCGTGCTCTGGCGTTAAAACATCTGGGAAGGATATTTCAGGAAAAGCAGACGCGAAATGGTGGAACTTCAAGAAGGAAAAGTTCTGTTGATACGGATGATGACGGAAGTAGTTCAGATAGCAGTTTTGAAGAGGATTCACCACGACCGCTATCACATAGAACTCCTTTTCTCACTCAGGGTATTGGCAGACTCTTCAGATGCCTATGTAATCCAGCATTCGATGTCGACGATGAAGAGATTGTGTACAAAAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

384

Amino Acids

43.43

Weight (kDa)

6.0

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 68 5.3e-25 DnaJ domain
DnaJ-X PF14308 131 - 319 1.5e-51 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77020
fragaria_vesca FvH4_2g15170 FvH4_2g15170
malus_domestica MD05G1010600.v1.1 MD10G1009300.v1.1
prunus_persica Prupe.8G013200_v2.0.a1 Prupe.8G013200_v2.0.a1
pyrus_communis pycom05g00560
rosa_chinensis RchiOBHm_Chr6g0277831
rosa_laevigata RLG00000013265
rosa_rugosa Rorug06G0111800 Rorug06G0111900
rosa_samantha Rh6AG222600 Rh6CG228600 Rh6DG219700
rosa_wichuraiana Rw6G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 604
AccI GTMKAC 1 cut(s) 1119
AccII CGCG 1 cut(s) 946
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 2 cut(s) 48, 1040
AclWI GGATC 3 cut(s) 116, 173, 239
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 680, 1072
AfaI GTAC 5 cut(s) 20, 150, 218, 606, 1139
AflII CTTAAG 1 cut(s) 83
AgsI TTSAA 6 cut(s) 382, 558, 755, 790, 963, 1022
AluBI AGCT 7 cut(s) 161, 254, 341, 412, 494, 577, 893
AluI AGCT 7 cut(s) 161, 254, 341, 412, 494, 577, 893
Alw21I GWGCWC 1 cut(s) 901
AlwI GGATC 3 cut(s) 116, 173, 239
AlwNI CAGNNNCTG 1 cut(s) 688
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 2 cut(s) 384, 736
ApeKI GCWGC 5 cut(s) 131, 512, 532, 566, 665
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 2 cut(s) 141, 1003
Asp718I GGTACC 1 cut(s) 604
AspA2I CCTAGG 1 cut(s) 598
AspS9I GGNCC 1 cut(s) 737
AsuHPI GGTGA 6 cut(s) 16, 167, 356, 362, 467, 1023
AvrII CCTAGG 1 cut(s) 598
AxyI CCTNAGG 1 cut(s) 126
BanI GGYRCC 1 cut(s) 604
BauI CACGAG 1 cut(s) 894
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 901
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 5 cut(s) 118, 519, 524, 578, 652
BccI CCATC 1 cut(s) 722
BceAI ACGGC 1 cut(s) 371
BfaI CTAG 3 cut(s) 228, 308, 599
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 5 cut(s) 132, 513, 533, 567, 666
BlnI CCTAGG 1 cut(s) 598
BlsI GCNGC 5 cut(s) 133, 514, 534, 568, 667
BmcAI AGTACT 2 cut(s) 20, 218
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 1 cut(s) 606
BmsI GCATC 4 cut(s) 184, 326, 499, 1082
BpiI GAAGAC 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 550
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 598
BsaWI WCCGGW 2 cut(s) 103, 181
Bse21I CCTNAGG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 3 cut(s) 100, 733, 994
BseJI GATNNNNATC 1 cut(s) 111
BseMII CTCAG 7 cut(s) 6, 45, 46, 140, 351, 609, 1082
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 5 cut(s) 118, 519, 524, 578, 652
BsgI GTGCAG 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 946
Bsh1285I CGRYCG 1 cut(s) 1040
BshFI GGCC 2 cut(s) 386, 738
BshNI GGYRCC 1 cut(s) 604
BsiEI CGRYCG 1 cut(s) 1040
BsiHKAI GWGCWC 1 cut(s) 901
BsiSI CCGG 2 cut(s) 104, 182
BslFI GGGAC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 651
BsmI GAATGC 1 cut(s) 1109
BsnI GGCC 2 cut(s) 386, 738
Bsp1286I GDGCHC 1 cut(s) 901
Bsp13I TCCGGA 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 1137
Bsp143I GATC 4 cut(s) 121, 178, 202, 244
BspACI CCGC 2 cut(s) 48, 1040
BspANI GGCC 2 cut(s) 386, 738
BspCNI CTCAG 7 cut(s) 7, 45, 46, 139, 352, 610, 1081
BspEI TCCGGA 1 cut(s) 103
BspFNI CGCG 1 cut(s) 946
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 606
BspPI GGATC 3 cut(s) 116, 173, 239
BspT107I GGYRCC 1 cut(s) 604
BspTI CTTAAG 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 1137
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 4 cut(s) 121, 178, 202, 244
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 598
Bst2BI CACGAG 1 cut(s) 894
Bst6I CTCTTC 3 cut(s) 1017, 1091, 1122
BstAFI CTTAAG 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 1137
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 414, 480
BstDEI CTNAG 7 cut(s) 15, 32, 54, 126, 360, 618, 1068
BstF5I GGATG 3 cut(s) 100, 733, 994
BstFNI CGCG 1 cut(s) 946
BstKTI GATC 4 cut(s) 124, 181, 205, 247
BstMBI GATC 4 cut(s) 121, 178, 202, 244
BstMCI CGRYCG 1 cut(s) 1040
BstMWI GCNNNNNNNGC 3 cut(s) 260, 323, 674
BstNSI RCATGY 2 cut(s) 482, 842
BstSNI TACGTA 1 cut(s) 550
BstUI CGCG 1 cut(s) 946
BstV1I GCAGC 5 cut(s) 118, 519, 524, 578, 652
BstV2I GAAGAC 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 386, 738
BtsCI GGATG 3 cut(s) 100, 733, 994
Cac8I GCNNGC 2 cut(s) 414, 480
CaiI CAGNNNCTG 1 cut(s) 688
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 737
CseI GACGC 2 cut(s) 25, 952
Csp6I GTAC 5 cut(s) 19, 149, 217, 605, 1138
CviAII CATG 4 cut(s) 238, 371, 479, 839
CviQI GTAC 5 cut(s) 19, 149, 217, 605, 1138
DdeI CTNAG 7 cut(s) 15, 32, 54, 126, 360, 618, 1068
DpnI GATC 4 cut(s) 123, 180, 204, 246
DpnII GATC 4 cut(s) 121, 178, 202, 244
Eam1104I CTCTTC 3 cut(s) 1017, 1091, 1122
EarI CTCTTC 3 cut(s) 1017, 1091, 1122
Eco105I TACGTA 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 598
Eco57I CTGAAG 2 cut(s) 680, 1072
Eco81I CCTNAGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 598
EcoT22I ATGCAT 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 598
FaeI CATG 4 cut(s) 241, 374, 482, 842
FalI AAGNNNNNCTT 6 cut(s) 396, 428, 420, 452, 768, 800
FaqI GGGAC 1 cut(s) 651
FatI CATG 4 cut(s) 237, 370, 478, 838
FauNDI CATATG 1 cut(s) 199
FblI GTMKAC 1 cut(s) 1119
Fnu4HI GCNGC 5 cut(s) 132, 513, 533, 567, 666
FokI GGATG 3 cut(s) 87, 740, 1001
Fsp4HI GCNGC 5 cut(s) 132, 513, 533, 567, 666
FspBI CTAG 3 cut(s) 228, 308, 599
GluI GCNGC 5 cut(s) 132, 513, 533, 567, 666
HaeIII GGCC 2 cut(s) 386, 738
HapII CCGG 2 cut(s) 104, 182
HgaI GACGC 2 cut(s) 25, 952
Hin1II CATG 4 cut(s) 241, 374, 482, 842
HincII GTYRAC 1 cut(s) 1120
HindII GTYRAC 1 cut(s) 1120
HindIII AAGCTT 2 cut(s) 159, 410
HinfI GANTC 5 cut(s) 468, 485, 755, 1028, 1083
HpaII CCGG 2 cut(s) 104, 182
HphI GGTGA 6 cut(s) 16, 167, 356, 362, 467, 1023
Hpy166II GTNNAC 3 cut(s) 817, 1120, 1138
Hpy188I TCNGA 8 cut(s) 55, 275, 393, 490, 508, 521, 1009, 1091
Hpy188III TCNNGA 7 cut(s) 104, 371, 558, 646, 698, 932, 963
Hpy8I GTNNAC 3 cut(s) 817, 1120, 1138
Hpy99I CGWCG 2 cut(s) 714, 1124
HpyAV CCTTC 7 cut(s) 341, 376, 526, 718, 870, 915, 960
HpyCH4IV ACGT 2 cut(s) 549, 750
HpyCH4V TGCA 8 cut(s) 187, 197, 222, 512, 535, 668, 691, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 323, 674
HpyF3I CTNAG 7 cut(s) 15, 32, 54, 126, 360, 618, 1068
HpySE526I ACGT 2 cut(s) 549, 750
Hsp92II CATG 4 cut(s) 241, 374, 482, 842
Kpn2I TCCGGA 1 cut(s) 103
KpnI GGTACC 1 cut(s) 608
Kzo9I GATC 4 cut(s) 121, 178, 202, 244
Lsp1109I GCAGC 5 cut(s) 118, 519, 524, 578, 652
LweI GCATC 4 cut(s) 184, 326, 499, 1082
MaeI CTAG 3 cut(s) 228, 308, 599
MaeII ACGT 2 cut(s) 549, 750
MaeIII GTNAC 6 cut(s) 37, 350, 455, 651, 684, 826
MalI GATC 4 cut(s) 123, 180, 204, 246
MboI GATC 4 cut(s) 121, 178, 202, 244
MboII GAAGA 7 cut(s) 250, 321, 416, 713, 1034, 1078, 1139
MhlI GDGCHC 1 cut(s) 901
MluCI AATT 5 cut(s) 63, 281, 335, 377, 716
MlyI GAGTC 1 cut(s) 1077
MnlI CCTC 9 cut(s) 41, 49, 52, 55, 135, 283, 457, 874, 1018
Mph1103I ATGCAT 1 cut(s) 199
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 2 cut(s) 141, 1003
MseI TTAA 6 cut(s) 84, 438, 720, 770, 888, 908
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 2 cut(s) 104, 182
Mva1269I GAATGC 1 cut(s) 1109
MvnI CGCG 1 cut(s) 946
MwoI GCNNNNNNNGC 3 cut(s) 260, 323, 674
NdeI CATATG 1 cut(s) 199
NdeII GATC 4 cut(s) 121, 178, 202, 244
NlaIII CATG 4 cut(s) 241, 374, 482, 842
NlaIV GGNNCC 1 cut(s) 606
NmuCI GTSAC 4 cut(s) 37, 350, 455, 651
NsiI ATGCAT 1 cut(s) 199
NspI RCATGY 2 cut(s) 482, 842
PaeI GCATGC 1 cut(s) 482
PagI TCATGA 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 1119
PctI GAATGC 1 cut(s) 1109
PdmI GAANNNNTTC 2 cut(s) 141, 1003
PfeI GAWTC 4 cut(s) 468, 485, 755, 1028
PkrI GCNGC 5 cut(s) 133, 514, 534, 568, 667
PleI GAGTC 1 cut(s) 1077
PpsI GAGTC 1 cut(s) 1077
Ppu21I YACGTR 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 688
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 5 cut(s) 20, 150, 218, 606, 1139
RsaNI GTAC 5 cut(s) 19, 149, 217, 605, 1138
SalI GTCGAC 1 cut(s) 1118
SaqAI TTAA 6 cut(s) 84, 438, 720, 770, 888, 908
SatI GCNGC 5 cut(s) 132, 513, 533, 567, 666
Sau3AI GATC 4 cut(s) 121, 178, 202, 244
Sau96I GGNCC 1 cut(s) 737
ScaI AGTACT 2 cut(s) 20, 218
SchI GAGTC 1 cut(s) 1077
SduI GDGCHC 1 cut(s) 901
SfaNI GCATC 4 cut(s) 184, 326, 499, 1082
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SnaBI TACGTA 1 cut(s) 550
SphI GCATGC 1 cut(s) 482
Sse9I AATT 5 cut(s) 63, 281, 335, 377, 716
SsiI CCGC 2 cut(s) 48, 1040
SspMI CTAG 3 cut(s) 228, 308, 599
StyI CCWWGG 1 cut(s) 598
TaiI ACGT 2 cut(s) 552, 753
TaqI TCGA 4 cut(s) 205, 822, 1113, 1119
TasI AATT 5 cut(s) 63, 281, 335, 377, 716
TatI WGTACW 3 cut(s) 18, 216, 1137
TfiI GAWTC 4 cut(s) 468, 485, 755, 1028
Tru1I TTAA 6 cut(s) 84, 438, 720, 770, 888, 908
Tru9I TTAA 6 cut(s) 84, 438, 720, 770, 888, 908
TseFI GTSAC 4 cut(s) 37, 350, 455, 651
TseI GCWGC 5 cut(s) 131, 512, 532, 566, 665
Tsp45I GTSAC 4 cut(s) 37, 350, 455, 651
TspDTI ATGAA 3 cut(s) 89, 359, 1140
TspGWI ACGGA 2 cut(s) 1001, 1011
Vha464I CTTAAG 1 cut(s) 83
XapI RAATTY 1 cut(s) 63
XceI RCATGY 2 cut(s) 482, 842
XmaJI CCTAGG 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 1119
XmnI GAANNNNTTC 2 cut(s) 141, 1003
XspI CTAG 3 cut(s) 228, 308, 599
ZrmI AGTACT 2 cut(s) 20, 218
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.