MD10G1009300.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0015483
Physical Location & Seq
Reverse (-)
1323448 .. 1327391
3944 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1009300.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGTGAAAGAAACTGAGTACTACGATGTCCTCAGCGTCACTCCCTCCGCTTCTGAGGAGGAAATTCGCAAAGCTTATTATCTTAAGGCAAAGCAAGTTCACCCGGATAAAAATCCGAATGATCCTCAGGCTGCCGAAAGATTTCAGGTACTAGGCGAAGCTTATCAAGTTTTGAGTGATCCGGTGCAAAGAGATGCTTATGATCGAAATGGAAAGCATTGCATATCTAGGGACACCATGCTTGATCCCACAGCTGTTTTTGCTTTTCTTTTCGGAAGTGAATTATTTGAGGACTACGTAGGACATGTAGCAGTAGCATCAATGGCTTCCTCTCAATTAGCTGGTGAAGGTGACAGCACCGAGAAGGTGCACGATAAATTGAAGGCTGTTCAGAAAGAAAGAGAAGAAAAGCTCGCTAACTCGCTGAAAGGTTTTCTTAACCAATATGTTCTAGGTGACAAAGAGGGATTCTTAGAGCATGCTGAATCCGAAGCTAAACGACTTTCTGATGCAGCCTTTGGAGTTGATATGCTGCACACTATTGGCTACATATATTCGAGACAAGCAGCACAAGAGCTTGGAAAGAAAACCATATTCCTAGGGGTACCATTCGTGGCTGAGTGGGTCCGTAATAAGGGACATTTCTGGAAGTCACAGATGACTGCTGCAAAGGGTGCTTTTCAGTTGCTACAGCTTCAGGAAGAAATCCGTCGGCAATTTAAAATGGATGGTAGTGGCCCTGAAAATGATGCTGAATCGCATATACGCTTAAACAAAGACACACTATTGAACTCATTGTGGAAACTCAATGTGGTGGACATCGAAGTAACGCTCTTGCATGTTTGCCAAATGGTTTTACGGGAAAATAATGTTAGGAAGGAGGAACTTAAAGCTCGTGCTCTGGCGTTAAAACATCTGGGAAGGATATTTCAGGAAAAGCAGACGCGAAATGGTGGAACGTCAAGAAGGAAAAGTTCTGTTGACAAGGATGATGATGGAAGCAGTTCAGATAGCAGTTCTGAAGAGGATTCACCCCAACCGCTTTCATATAGAACTCCCTTTCTCACTCAGGGTATTGGCAGACTGTTCAGATGCCTTTGTAATCCAGCATATGACGTCGACGACGACGAAGAGATTGTGTACAAAAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

385

Amino Acids

43.43

Weight (kDa)

5.69

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 68 4.5e-25 DnaJ domain
DnaJ-X PF14308 131 - 319 8.9e-52 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015483)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77020
fragaria_vesca FvH4_2g15170 FvH4_2g15170
malus_domestica MD05G1010600.v1.1 MD10G1009300.v1.1
prunus_persica Prupe.8G013200_v2.0.a1 Prupe.8G013200_v2.0.a1
pyrus_communis pycom05g00560
rosa_chinensis RchiOBHm_Chr6g0277831
rosa_laevigata RLG00000013265
rosa_rugosa Rorug06G0111800 Rorug06G0111900
rosa_samantha Rh6AG222600 Rh6CG228600 Rh6DG219700
rosa_wichuraiana Rw6G019440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1119
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 604
AccI GTMKAC 1 cut(s) 1119
AccII CGCG 1 cut(s) 946
AciI CCGC 2 cut(s) 48, 1040
AclWI GGATC 3 cut(s) 116, 173, 239
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 680, 1041
AcyI GRCGYC 1 cut(s) 1116
AfaI GTAC 4 cut(s) 20, 150, 606, 1142
AfiI CCNNNNNNNGG 1 cut(s) 634
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 2 cut(s) 382, 790
AluBI AGCT 9 cut(s) 74, 161, 254, 341, 412, 494, 577, 694, 893
AluI AGCT 9 cut(s) 74, 161, 254, 341, 412, 494, 577, 694, 893
Alw21I GWGCWC 2 cut(s) 372, 901
Alw26I GTCTC 1 cut(s) 553
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 3 cut(s) 116, 173, 239
AoxI GGCC 1 cut(s) 736
ApaLI GTGCAC 1 cut(s) 368
ApeKI GCWGC 5 cut(s) 131, 512, 532, 566, 665
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 2 cut(s) 141, 1003
Asp718I GGTACC 1 cut(s) 604
AspA2I CCTAGG 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 625, 737
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 6 cut(s) 16, 92, 356, 362, 467, 1023
AvaII GGWCC 1 cut(s) 625
AvrII CCTAGG 1 cut(s) 598
AxyI CCTNAGG 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 604
BauI CACGAG 1 cut(s) 894
Bbv12I GWGCWC 2 cut(s) 372, 901
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 5 cut(s) 118, 519, 524, 578, 652
BccI CCATC 2 cut(s) 722, 989
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 4 cut(s) 152, 228, 452, 599
BfmI CTRYAG 1 cut(s) 689
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 5 cut(s) 132, 513, 533, 567, 666
BlnI CCTAGG 1 cut(s) 598
BlsI GCNGC 5 cut(s) 133, 514, 534, 568, 667
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 2 cut(s) 625, 737
BmiI GGNNCC 2 cut(s) 606, 626
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 5 cut(s) 184, 326, 499, 739, 1082
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 1116
BsaJI CCNNGG 1 cut(s) 598
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse21I CCTNAGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 2 cut(s) 733, 994
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 6 cut(s) 6, 45, 46, 140, 609, 1082
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 5 cut(s) 118, 519, 524, 578, 652
BsgI GTGCAG 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 946
BshFI GGCC 1 cut(s) 738
BshNI GGYRCC 1 cut(s) 604
BsiHKAI GWGCWC 2 cut(s) 372, 901
BsiSI CCGG 2 cut(s) 104, 182
BslFI GGGAC 2 cut(s) 245, 651
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 1 cut(s) 553
BsmFI GGGAC 2 cut(s) 245, 651
BsnI GGCC 1 cut(s) 738
Bsp1286I GDGCHC 2 cut(s) 372, 901
Bsp1407I TGTACA 1 cut(s) 1140
Bsp143I GATC 4 cut(s) 121, 178, 202, 244
BspACI CCGC 2 cut(s) 48, 1040
BspANI GGCC 1 cut(s) 738
BspCNI CTCAG 6 cut(s) 7, 45, 46, 139, 610, 1081
BspFNI CGCG 1 cut(s) 946
BspLI GGNNCC 2 cut(s) 606, 626
BspPI GGATC 3 cut(s) 116, 173, 239
BspT107I GGYRCC 1 cut(s) 604
BspTI CTTAAG 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 1140
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 4 cut(s) 121, 178, 202, 244
BssNI GRCGYC 1 cut(s) 1116
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 598
Bst2BI CACGAG 1 cut(s) 894
Bst4CI ACNGT 1 cut(s) 1086
Bst6I CTCTTC 2 cut(s) 1017, 1125
BstACI GRCGYC 1 cut(s) 1116
BstAFI CTTAAG 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 1140
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 414, 480
BstDEI CTNAG 7 cut(s) 15, 32, 54, 126, 472, 618, 1068
BstF5I GGATG 2 cut(s) 733, 994
BstFNI CGCG 1 cut(s) 946
BstKTI GATC 4 cut(s) 124, 181, 205, 247
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 4 cut(s) 121, 178, 202, 244
BstMWI GCNNNNNNNGC 3 cut(s) 260, 323, 674
BstNSI RCATGY 3 cut(s) 308, 482, 842
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 689
BstSLI GKGCMC 1 cut(s) 372
BstSNI TACGTA 1 cut(s) 298
BstUI CGCG 1 cut(s) 946
BstV1I GCAGC 5 cut(s) 118, 519, 524, 578, 652
Bsu36I CCTNAGG 1 cut(s) 126
BsuRI GGCC 1 cut(s) 738
BtsCI GGATG 2 cut(s) 733, 994
Cac8I GCNNGC 2 cut(s) 414, 480
Cfr13I GGNCC 2 cut(s) 625, 737
CseI GACGC 2 cut(s) 25, 952
Csp6I GTAC 4 cut(s) 19, 149, 605, 1141
CviAII CATG 4 cut(s) 238, 305, 479, 839
CviQI GTAC 4 cut(s) 19, 149, 605, 1141
DdeI CTNAG 7 cut(s) 15, 32, 54, 126, 472, 618, 1068
DpnI GATC 4 cut(s) 123, 180, 204, 246
DpnII GATC 4 cut(s) 121, 178, 202, 244
DraI TTTAAA 1 cut(s) 721
Eam1104I CTCTTC 2 cut(s) 1017, 1125
EarI CTCTTC 2 cut(s) 1017, 1125
Eco105I TACGTA 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 598
Eco47I GGWCC 1 cut(s) 625
Eco57I CTGAAG 2 cut(s) 680, 1041
Eco81I CCTNAGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 598
FaeI CATG 4 cut(s) 241, 308, 482, 842
FalI AAGNNNNNCTT 4 cut(s) 181, 213, 420, 452
FaqI GGGAC 2 cut(s) 245, 651
FatI CATG 4 cut(s) 237, 304, 478, 838
FauNDI CATATG 1 cut(s) 1111
FblI GTMKAC 1 cut(s) 1119
Fnu4HI GCNGC 5 cut(s) 132, 513, 533, 567, 666
FokI GGATG 2 cut(s) 740, 1001
Fsp4HI GCNGC 5 cut(s) 132, 513, 533, 567, 666
FspBI CTAG 4 cut(s) 152, 228, 452, 599
GluI GCNGC 5 cut(s) 132, 513, 533, 567, 666
HaeIII GGCC 1 cut(s) 738
HapII CCGG 2 cut(s) 104, 182
HgaI GACGC 2 cut(s) 25, 952
Hin1I GRCGYC 1 cut(s) 1116
Hin1II CATG 4 cut(s) 241, 308, 482, 842
HincII GTYRAC 2 cut(s) 982, 1120
HindII GTYRAC 2 cut(s) 982, 1120
HindIII AAGCTT 2 cut(s) 72, 159
HinfI GANTC 4 cut(s) 468, 485, 755, 1028
HpaII CCGG 2 cut(s) 104, 182
HphI GGTGA 6 cut(s) 16, 92, 356, 362, 467, 1023
Hpy166II GTNNAC 6 cut(s) 100, 370, 817, 982, 1120, 1141
Hpy188I TCNGA 9 cut(s) 55, 117, 275, 393, 490, 508, 1009, 1021, 1091
Hpy188III TCNNGA 5 cut(s) 558, 646, 698, 932, 963
Hpy8I GTNNAC 6 cut(s) 100, 370, 817, 982, 1120, 1141
Hpy99I CGWCG 5 cut(s) 714, 1121, 1124, 1127, 1130
HpyAV CCTTC 6 cut(s) 341, 358, 376, 871, 915, 960
HpyCH4III ACNGT 1 cut(s) 1086
HpyCH4IV ACGT 3 cut(s) 297, 959, 1116
HpyCH4V TGCA 7 cut(s) 187, 222, 370, 512, 535, 668, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 323, 674
HpyF3I CTNAG 7 cut(s) 15, 32, 54, 126, 472, 618, 1068
HpySE526I ACGT 3 cut(s) 297, 959, 1116
Hsp92I GRCGYC 1 cut(s) 1116
Hsp92II CATG 4 cut(s) 241, 308, 482, 842
KpnI GGTACC 1 cut(s) 608
Kzo9I GATC 4 cut(s) 121, 178, 202, 244
Lsp1109I GCAGC 5 cut(s) 118, 519, 524, 578, 652
LweI GCATC 5 cut(s) 184, 326, 499, 739, 1082
MaeI CTAG 4 cut(s) 152, 228, 452, 599
MaeII ACGT 3 cut(s) 297, 959, 1116
MaeIII GTNAC 5 cut(s) 37, 350, 455, 651, 826
MalI GATC 4 cut(s) 123, 180, 204, 246
MboI GATC 4 cut(s) 121, 178, 202, 244
MboII GAAGA 4 cut(s) 416, 713, 1034, 1142
MhlI GDGCHC 2 cut(s) 372, 901
MluCI AATT 5 cut(s) 63, 281, 335, 377, 716
MroXI GAANNNNTTC 2 cut(s) 141, 1003
MseI TTAA 6 cut(s) 84, 438, 720, 770, 888, 908
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 2 cut(s) 104, 182
MspR9I CCNGG 1 cut(s) 104
MvnI CGCG 1 cut(s) 946
MwoI GCNNNNNNNGC 3 cut(s) 260, 323, 674
NciI CCSGG 1 cut(s) 104
NdeI CATATG 1 cut(s) 1111
NdeII GATC 4 cut(s) 121, 178, 202, 244
NlaIII CATG 4 cut(s) 241, 308, 482, 842
NlaIV GGNNCC 2 cut(s) 606, 626
NmuCI GTSAC 4 cut(s) 37, 350, 455, 651
NspI RCATGY 3 cut(s) 308, 482, 842
PaeI GCATGC 1 cut(s) 482
PciI ACATGT 1 cut(s) 304
PcsI WCGNNNNNNNCGW 2 cut(s) 1122, 1125
PdmI GAANNNNTTC 2 cut(s) 141, 1003
PfeI GAWTC 4 cut(s) 468, 485, 755, 1028
PkrI GCNGC 5 cut(s) 133, 514, 534, 568, 667
Ppu21I YACGTR 1 cut(s) 298
PscI ACATGT 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 606, 626
PspPI GGNCC 2 cut(s) 625, 737
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 4 cut(s) 20, 150, 606, 1142
RsaNI GTAC 4 cut(s) 19, 149, 605, 1141
SalI GTCGAC 1 cut(s) 1118
SaqAI TTAA 6 cut(s) 84, 438, 720, 770, 888, 908
SatI GCNGC 5 cut(s) 132, 513, 533, 567, 666
Sau3AI GATC 4 cut(s) 121, 178, 202, 244
Sau96I GGNCC 2 cut(s) 625, 737
ScaI AGTACT 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 2 cut(s) 372, 901
SfaNI GCATC 5 cut(s) 184, 326, 499, 739, 1082
SfcI CTRYAG 1 cut(s) 689
SgrDI CGTCGACG 1 cut(s) 1118
SinI GGWCC 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SnaBI TACGTA 1 cut(s) 298
SphI GCATGC 1 cut(s) 482
Sse9I AATT 5 cut(s) 63, 281, 335, 377, 716
SsiI CCGC 2 cut(s) 48, 1040
SspMI CTAG 4 cut(s) 152, 228, 452, 599
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 598
TaaI ACNGT 1 cut(s) 1086
TaiI ACGT 3 cut(s) 300, 962, 1119
TaqI TCGA 4 cut(s) 205, 557, 822, 1119
TasI AATT 5 cut(s) 63, 281, 335, 377, 716
TatI WGTACW 2 cut(s) 18, 1140
TfiI GAWTC 4 cut(s) 468, 485, 755, 1028
Tru1I TTAA 6 cut(s) 84, 438, 720, 770, 888, 908
Tru9I TTAA 6 cut(s) 84, 438, 720, 770, 888, 908
TseFI GTSAC 4 cut(s) 37, 350, 455, 651
TseI GCWGC 5 cut(s) 131, 512, 532, 566, 665
Tsp45I GTSAC 4 cut(s) 37, 350, 455, 651
TspDTI ATGAA 1 cut(s) 1035
TspGWI ACGGA 2 cut(s) 617, 698
Vha464I CTTAAG 1 cut(s) 83
VneI GTGCAC 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 1 cut(s) 63
XceI RCATGY 3 cut(s) 308, 482, 842
XmaJI CCTAGG 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 1119
XmnI GAANNNNTTC 2 cut(s) 141, 1003
XspI CTAG 4 cut(s) 152, 228, 452, 599
ZraI GACGTC 1 cut(s) 1117
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.