Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015080

Physical Location & Seq

Genomic Coordinates Reverse (-)

29062945 .. 29064637

Gene Structure 1693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGATTCCTGTTATCGATTTCTCCAAACTCAATGGTGAAGAAAGAGAGAAGACACTGTCTGAAATCGCTAGAGCTTGCGAAGAGTGGGGATTTTTTCAGCTGGTGAACCATGGTATTCCATTGGAGCTTCTAAATAAGGTGAAGAAGCTGAGCTCAGATTGCTACAAAACAGAGAGAGAAGAAGCATTCAAGACTTCTAATCCCGTGAAGTTGCTCAACGAATTGGTTCAAAAGAACTCTGGCGAGAAGCTAGAAAACGTGGACTGGGAAGATGTCTTCACTCTCTTGGACCATAACCAAAACGAATGGCCATCCAACATTAAAGAGACTATGGGAGAATACAGAGAAGAAGTGAGGAAGCTAGCGAGCAAGATGATGGAAGTGATGGATGAGAATTTGGGTTTGCCTAAAGGTTACATAAAGAAAGCTTTCAATGAAGGAATGGAAGATGGAGAAGAGACAGCTTTCTTTGGGACTAAAGTCAGCCATTACCCTCCTTGTCCTCATCCTGAGCTAGTCAATGGCCTTCGAGCTCATACTGATGCAGGAGGTGTCGTTTTGCTTTTCCAAGACGATGAATATGATGGCCTTCAGGTCTTGAAAGACGGCGAGTGGATCGATGTTCAGCCTCTACCTAATGCCATTGTTATCAACACTGGTGATCAGATTGAAGTTCTTAGCAACGGAAGGTACAAGAGTGCGTGGCACAGGGTGTTGGCGAGGGAGGAAGGAAACAGAAGGTCTATAGCTTCCTTCTACAATCCGTCGTACAAGGCGGCGATAGGGCCAGCCGCGGTGGCGGAAGAGGAAGGAAGTGAGAAGAAGTATCCAAAGTTTGTGTTTGGAGATTACATGGATGTTTATGCAAACCAGAAGTTCATGCCTAAAGAGCCTCGTTTTCTAGCTGTAAAGTCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009692 GO:0009693 GO:0009815 GO:0009987 GO:0010817 GO:0016491 GO:0016638 GO:0016641 GO:0042445 GO:0042446 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

307

Amino Acids

34.95

Weight (kDa)

5.05

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 105	1.9e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	162 - 256	2.3e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77330
fragaria_vesca	FvH4_2g27800
malus_domestica	MD08G1160900.v1.1
prunus_persica	Prupe.1G490000_v2.0.a1
pyrus_communis	pycom348g00080
rosa_chinensis	RchiOBHm_Chr6g0296661
rosa_laevigata	RLG00000011672
rosa_multiflora	Rmu_sc0001741.1_g000013
rosa_roxburghii	Rroxscaffold_7G00171280
rosa_rugosa	Rorug06G0264000
rosa_samantha	Rh6AG375800 Rh6BG384100 Rh6CG389200 Rh6DG376600
rosa_wichuraiana	Rw6G032760 Rw6G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	797
AciI	CCGC	4 cut(s)	779, 795, 797, 803
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	578
AdeI	CACNNNGTG	1 cut(s)	715
AfaI	GTAC	2 cut(s)	695, 773
AgsI	TTSAA	5 cut(s)	193, 233, 436, 604, 674
Alw21I	GWGCWC	2 cut(s)	158, 538
Alw26I	GTCTC	2 cut(s)	323, 455
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	4 cut(s)	311, 526, 589, 788
ApoI	RAATTY	1 cut(s)	397
Asp700I	GAANNNNTTC	2 cut(s)	228, 431
AspS9I	GGNCC	2 cut(s)	292, 788
AsuHPI	GGTGA	4 cut(s)	50, 118, 154, 674
AsuNHI	GCTAGC	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	292
BaeI	ACNNNNGTAYC	2 cut(s)	685, 718
BalI	TGGCCA	1 cut(s)	313
BanII	GRGCYC	2 cut(s)	158, 538
BbsI	GAAGAC	2 cut(s)	59, 271
Bbv12I	GWGCWC	2 cut(s)	158, 538
BccI	CCATC	5 cut(s)	322, 373, 382, 446, 581
BceAI	ACGGC	1 cut(s)	625
BciVI	GTATCC	1 cut(s)	840
BclI	TGATCA	1 cut(s)	664
BcoDI	GTCTC	2 cut(s)	323, 455
BfaI	CTAG	5 cut(s)	72, 254, 365, 518, 905
BfmI	CTRYAG	1 cut(s)	747
BfuI	GTATCC	1 cut(s)	840
BglI	GCCNNNNNGGC	1 cut(s)	800
BisI	GCNGC	2 cut(s)	780, 795
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	2 cut(s)	781, 796
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	292, 788
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	535
BmtI	GCTAGC	1 cut(s)	368
BmuI	ACTGGG	1 cut(s)	277
BoxI	GACNNNNGTC	1 cut(s)	482
BpiI	GAAGAC	2 cut(s)	59, 271
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	152
Bsa29I	ATCGAT	2 cut(s)	18, 621
BsaJI	CCNNGG	2 cut(s)	112, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bse1I	ACTGG	2 cut(s)	272, 664
BseCI	ATCGAT	2 cut(s)	18, 621
BseDI	CCNNGG	2 cut(s)	112, 795
BseGI	GGATG	4 cut(s)	314, 397, 508, 865
BseMII	CTCAG	3 cut(s)	143, 171, 504
BseNI	ACTGG	2 cut(s)	272, 664
Bsh1236I	CGCG	1 cut(s)	797
BshFI	GGCC	4 cut(s)	313, 528, 591, 790
BshVI	ATCGAT	2 cut(s)	18, 621
BsiHKAI	GWGCWC	2 cut(s)	158, 538
BslFI	GGGAC	1 cut(s)	490
BsmAI	GTCTC	2 cut(s)	323, 455
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	313, 528, 591, 790
Bsp1286I	GDGCHC	2 cut(s)	158, 538
Bsp143I	GATC	2 cut(s)	618, 664
Bsp1720I	GCTNAGC	1 cut(s)	152
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	4 cut(s)	779, 795, 797, 803
BspANI	GGCC	4 cut(s)	313, 528, 591, 790
BspCNI	CTCAG	3 cut(s)	144, 170, 505
BspDI	ATCGAT	2 cut(s)	18, 621
BspFNI	CGCG	1 cut(s)	797
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	1 cut(s)	626
BsrI	ACTGG	2 cut(s)	272, 664
BssECI	CCNNGG	2 cut(s)	112, 795
BssMI	GATC	2 cut(s)	618, 664
BssT1I	CCWWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	3 cut(s)	78, 453, 801
BstC8I	GCNNGC	4 cut(s)	79, 366, 370, 792
BstDEI	CTNAG	4 cut(s)	152, 157, 513, 680
BstDSI	CCRYGG	2 cut(s)	112, 795
BstF5I	GGATG	4 cut(s)	314, 397, 508, 865
BstFNI	CGCG	1 cut(s)	797
BstKTI	GATC	2 cut(s)	621, 667
BstMAI	GTCTC	2 cut(s)	323, 455
BstMBI	GATC	2 cut(s)	618, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 800, 892
BstPAI	GACNNNNGTC	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	747
BstUI	CGCG	1 cut(s)	797
BstV2I	GAAGAC	2 cut(s)	59, 271
Bsu15I	ATCGAT	2 cut(s)	18, 621
BsuI	GTATCC	1 cut(s)	840
BsuRI	GGCC	4 cut(s)	313, 528, 591, 790
BsuTUI	ATCGAT	2 cut(s)	18, 621
BtgI	CCRYGG	2 cut(s)	112, 795
BtsCI	GGATG	4 cut(s)	314, 397, 508, 865
BtsIMutI	CAGTG	2 cut(s)	56, 657
Cac8I	GCNNGC	4 cut(s)	79, 366, 370, 792
Cfr13I	GGNCC	2 cut(s)	292, 788
Cfr42I	CCGCGG	1 cut(s)	798
ClaI	ATCGAT	2 cut(s)	18, 621
Csp6I	GTAC	2 cut(s)	694, 772
CviAII	CATG	3 cut(s)	113, 856, 883
CviQI	GTAC	2 cut(s)	694, 772
DdeI	CTNAG	4 cut(s)	152, 157, 513, 680
DpnI	GATC	2 cut(s)	620, 666
DpnII	GATC	2 cut(s)	618, 664
DraIII	CACNNNGTG	1 cut(s)	715
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	3 cut(s)	78, 453, 801
EarI	CTCTTC	3 cut(s)	78, 453, 801
EciI	GGCGGA	1 cut(s)	818
Ecl136II	GAGCTC	2 cut(s)	156, 536
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	158, 538
Eco47I	GGWCC	1 cut(s)	292
Eco53kI	GAGCTC	2 cut(s)	156, 536
Eco57I	CTGAAG	1 cut(s)	578
EcoICRI	GAGCTC	2 cut(s)	156, 536
EcoT14I	CCWWGG	1 cut(s)	112
EcoT38I	GRGCYC	2 cut(s)	158, 538
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	3 cut(s)	116, 859, 886
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	3 cut(s)	112, 855, 882
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	780, 795
FokI	GGATG	4 cut(s)	301, 404, 495, 872
FriOI	GRGCYC	2 cut(s)	158, 538
Fsp4HI	GCNGC	2 cut(s)	780, 795
FspBI	CTAG	5 cut(s)	72, 254, 365, 518, 905
GluI	GCNGC	2 cut(s)	780, 795
HaeIII	GGCC	4 cut(s)	313, 528, 591, 790
Hin1II	CATG	3 cut(s)	116, 859, 886
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	4 cut(s)	50, 118, 154, 674
Hpy166II	GTNNAC	2 cut(s)	109, 265
Hpy188I	TCNGA	3 cut(s)	64, 160, 669
Hpy188III	TCNNGA	3 cut(s)	193, 512, 601
Hpy8I	GTNNAC	2 cut(s)	109, 265
Hpy99I	CGWCG	1 cut(s)	772
HpyAV	CCTTC	8 cut(s)	434, 539, 602, 684, 725, 735, 766, 806
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	548, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 800, 892
HpyF3I	CTNAG	4 cut(s)	152, 157, 513, 680
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	116, 859, 886
Ksp22I	TGATCA	1 cut(s)	664
KspI	CCGCGG	1 cut(s)	798
Kzo9I	GATC	2 cut(s)	618, 664
LmnI	GCTCC	1 cut(s)	127
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	5 cut(s)	72, 254, 365, 518, 905
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	620, 666
MboI	GATC	2 cut(s)	618, 664
MhlI	GDGCHC	2 cut(s)	158, 538
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	2 cut(s)	224, 397
MluNI	TGGCCA	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	9 cut(s)	351, 507, 516, 545, 642, 717, 721, 802, 906
Mox20I	TGGCCA	1 cut(s)	313
MroXI	GAANNNNTTC	2 cut(s)	228, 431
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	543
Msp20I	TGGCCA	1 cut(s)	313
MspA1I	CMGCKG	2 cut(s)	103, 797
Mva1269I	GAATGC	1 cut(s)	188
MvnI	CGCG	1 cut(s)	797
MwoI	GCNNNNNNNGC	3 cut(s)	162, 800, 892
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	2 cut(s)	618, 664
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	3 cut(s)	116, 859, 886
PctI	GAATGC	1 cut(s)	188
PdmI	GAANNNNTTC	2 cut(s)	228, 431
PfeI	GAWTC	1 cut(s)	7
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	781, 796
PshAI	GACNNNNGTC	1 cut(s)	482
Psp124BI	GAGCTC	2 cut(s)	158, 538
PspPI	GGNCC	2 cut(s)	292, 788
PsyI	GACNNNGTC	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	695, 773
RsaNI	GTAC	2 cut(s)	694, 772
RseI	CAYNNNNRTG	1 cut(s)	543
SacI	GAGCTC	2 cut(s)	158, 538
SacII	CCGCGG	1 cut(s)	798
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	780, 795
Sau3AI	GATC	2 cut(s)	618, 664
Sau96I	GGNCC	2 cut(s)	292, 788
SduI	GDGCHC	2 cut(s)	158, 538
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	747
Sfr303I	CCGCGG	1 cut(s)	798
SgrBI	CCGCGG	1 cut(s)	798
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	543
Sse9I	AATT	2 cut(s)	224, 397
SsiI	CCGC	4 cut(s)	779, 795, 797, 803
SspMI	CTAG	5 cut(s)	72, 254, 365, 518, 905
SstI	GAGCTC	2 cut(s)	158, 538
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	18, 532, 621
TasI	AATT	2 cut(s)	224, 397
TauI	GCSGC	2 cut(s)	782, 797
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	63, 664
TspDTI	ATGAA	3 cut(s)	453, 594, 871
TspGWI	ACGGA	2 cut(s)	702, 756
TspRI	CASTG	2 cut(s)	63, 664
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	397
XmnI	GAANNNNTTC	2 cut(s)	228, 431
XspI	CTAG	5 cut(s)	72, 254, 365, 518, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.