Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000348

Orthogroup ID

OG0015080

Physical Location & Seq

Genomic Coordinates Reverse (-)

86907 .. 88242

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom348g00080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCAATCCCAGTTATTGATTTCTCAAAACTTGATGGTGAAGAAAGGGCCAAAACATTGGCTGAGGTTGCTAATGGATGTGAGGAATGGGGATTCTTCCAGCTGGTGAACCATGGAATATCGGAGGAGCTTCTCGAGAGGGTGAAGAAGGTGACTGGGGACTTCTTTAGGATGGAAAGACAGGAGAACTTTAAGAATTCCACACTAATGAAGGCGGTAAATGAAAACAAAAAATTGGAGAATGTGGACTGGGAGGATGTCTTCACCCTCTTGGATGACAACGAATGGCCCTCGAAAACCCCTGGATTCAAGGAAACCATGGAAGAATACAGAAGAGAACTGAAGAAACTTGCTGAGAGGGTTATGGAAGTGATGGATGAGAACTTAGGGTTACCAAAGGGATACATGAAGAAAGCCTTCAACGGTGGCGAAGAAGACAATGCCTTTTTCGGCACCAAGGTGAGCCACTACCCACCATGCCCTAAGCCAGAGCTGGTGACTGGTCTCCGAGCTCACACTGATGCAGGCGGTGTAATATTGCTCTTCCAAGATGACAAAGTTGGAGGCCTCCAAATCCTGAAAGATGGGCAGTGGATAGACGTGCAGCCATTGCGCAACTCGATTGTCATCAACACTGGGGACCAGATTGAGGTTCTGAGCAATGGCCGCTACAAGAGTGTTTGGCACAGGGTTTTGGCTACCCCAACTGGGAATCGAAGGTCAATTGCTTCGTTTTATAACCCATCAATGAAGGCCACCATAGCTCCTGCGCCGGAATTGGTCAAAAAGGAGAACCAAGAAGTGGATCAGACTTATCCCAAGTTTGTGTTTGGTGACTACCTCTCTGTATATGCCGAGCAGAAGTTCCTTCCCAAGGAACCAAGGTTCCAGTCTGTGAGGGCCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009692 GO:0009693 GO:0009815 GO:0009987 GO:0010817 GO:0016491 GO:0016638 GO:0016641 GO:0042445 GO:0042446 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

303

Amino Acids

34.47

Weight (kDa)

5.5

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 93	2.9e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	154 - 248	3.1e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77330
fragaria_vesca	FvH4_2g27800
malus_domestica	MD08G1160900.v1.1
prunus_persica	Prupe.1G490000_v2.0.a1
pyrus_communis	pycom348g00080
rosa_chinensis	RchiOBHm_Chr6g0296661
rosa_laevigata	RLG00000011672
rosa_multiflora	Rmu_sc0001741.1_g000013
rosa_roxburghii	Rroxscaffold_7G00171280
rosa_rugosa	Rorug06G0264000
rosa_samantha	Rh6AG375800 Rh6BG384100 Rh6CG389200 Rh6DG376600
rosa_wichuraiana	Rw6G032760 Rw6G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
Acc16I	TGCGCA	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	802
AciI	CCGC	3 cut(s)	215, 528, 667
AclWI	GGATC	1 cut(s)	813
AcoI	YGGCCR	1 cut(s)	664
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	362
AfiI	CCNNNNNNNGG	4 cut(s)	649, 708, 802, 874
AgsI	TTSAA	2 cut(s)	310, 421
AjiI	CACGTC	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	301
AleI	CACNNNNGTG	1 cut(s)	458
AloI	GAACNNNNNNTCC	4 cut(s)	869, 870, 901, 902
AluBI	AGCT	5 cut(s)	103, 130, 493, 512, 764
AluI	AGCT	5 cut(s)	103, 130, 493, 512, 764
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	813
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	6 cut(s)	48, 287, 565, 664, 753, 900
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	2 cut(s)	615, 772
AspS9I	GGNCC	4 cut(s)	48, 288, 640, 900
AsuHPI	GGTGA	8 cut(s)	50, 118, 154, 163, 256, 472, 508, 845
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	514
BbsI	GAAGAC	2 cut(s)	253, 441
Bbv12I	GWGCWC	1 cut(s)	514
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	5 cut(s)	29, 166, 367, 578, 751
BceAI	ACGGC	1 cut(s)	887
BciT130I	CCWGG	1 cut(s)	303
BciVI	GTATCC	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	395
BisI	GCNGC	2 cut(s)	605, 667
BlsI	GCNGC	2 cut(s)	606, 668
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	4 cut(s)	48, 288, 640, 900
BmiI	GGNNCC	4 cut(s)	454, 641, 879, 887
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	5 cut(s)	5, 165, 259, 645, 717
BmsI	GCATC	1 cut(s)	511
BmuI	ACTGGG	5 cut(s)	5, 165, 259, 645, 717
BpiI	GAAGAC	2 cut(s)	253, 441
Bpu10I	CCTNAGC	2 cut(s)	63, 483
BsaBI	GATNNNNATC	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	6 cut(s)	112, 301, 318, 456, 873, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	748, 778
Bsc4I	CCNNNNNNNGG	4 cut(s)	649, 708, 802, 874
Bse1I	ACTGG	7 cut(s)	11, 160, 254, 505, 640, 712, 889
Bse3DI	GCAATG	2 cut(s)	608, 667
Bse8I	GATNNNNATC	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	6 cut(s)	112, 301, 318, 456, 873, 881
BseGI	GGATG	5 cut(s)	83, 177, 262, 280, 382
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	4 cut(s)	649, 708, 802, 874
BseMI	GCAATG	2 cut(s)	608, 667
BseMII	CTCAG	3 cut(s)	54, 345, 647
BseNI	ACTGG	7 cut(s)	11, 160, 254, 505, 640, 712, 889
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	623
BshFI	GGCC	6 cut(s)	50, 289, 567, 666, 755, 902
BshNI	GGYRCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	773
BslFI	GGGAC	2 cut(s)	173, 653
BslI	CCNNNNNNNGG	4 cut(s)	649, 708, 802, 874
BsmAI	GTCTC	1 cut(s)	509
BsmFI	GGGAC	2 cut(s)	173, 653
BsnI	GGCC	6 cut(s)	50, 289, 567, 666, 755, 902
Bso31I	GGTCTC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp143I	GATC	1 cut(s)	805
Bsp19I	CCATGG	2 cut(s)	112, 318
BspACI	CCGC	3 cut(s)	215, 528, 667
BspANI	GGCC	6 cut(s)	50, 289, 567, 666, 755, 902
BspCNI	CTCAG	3 cut(s)	55, 346, 648
BspLI	GGNNCC	4 cut(s)	454, 641, 879, 887
BspPI	GGATC	1 cut(s)	813
BspQI	GCTCTTC	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	608, 667
BsrI	ACTGG	7 cut(s)	11, 160, 254, 505, 640, 712, 889
BssECI	CCNNGG	6 cut(s)	112, 301, 318, 456, 873, 881
BssMI	GATC	1 cut(s)	805
BssT1I	CCWWGG	5 cut(s)	112, 318, 456, 873, 881
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	328, 548
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	5 cut(s)	63, 354, 385, 483, 656
BstDSI	CCRYGG	2 cut(s)	112, 318
BstEII	GGTNACC	1 cut(s)	390
BstENI	CCTNNNNNAGG	1 cut(s)	872
BstF5I	GGATG	5 cut(s)	83, 177, 262, 280, 382
BstHHI	GCGC	2 cut(s)	615, 772
BstKTI	GATC	1 cut(s)	808
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	1 cut(s)	805
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 610, 666, 761
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	2 cut(s)	253, 441
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	6 cut(s)	50, 289, 567, 666, 755, 902
BtgI	CCRYGG	2 cut(s)	112, 318
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	5 cut(s)	83, 177, 262, 280, 382
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	3 cut(s)	516, 596, 633
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	2 cut(s)	615, 772
Cfr13I	GGNCC	4 cut(s)	48, 288, 640, 900
CviAII	CATG	4 cut(s)	113, 319, 406, 477
DdeI	CTNAG	5 cut(s)	63, 354, 385, 483, 656
DpnI	GATC	1 cut(s)	807
DpnII	GATC	1 cut(s)	805
EaeI	YGGCCR	1 cut(s)	664
Eam1104I	CTCTTC	2 cut(s)	328, 548
EarI	CTCTTC	2 cut(s)	328, 548
Ecl136II	GAGCTC	1 cut(s)	512
Eco130I	CCWWGG	5 cut(s)	112, 318, 456, 873, 881
Eco147I	AGGCCT	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	514
Eco31I	GGTCTC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	640
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	512
EcoNI	CCTNNNNNAGG	1 cut(s)	872
EcoO65I	GGTNACC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	5 cut(s)	112, 318, 456, 873, 881
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	5 cut(s)	112, 318, 456, 873, 881
FaeI	CATG	4 cut(s)	116, 322, 409, 480
FaiI	YATR	9 cut(s)	114, 320, 365, 407, 478, 738, 761, 850, 852
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	2 cut(s)	173, 653
FatI	CATG	4 cut(s)	112, 318, 405, 476
Fnu4HI	GCNGC	2 cut(s)	605, 667
FokI	GGATG	5 cut(s)	90, 184, 269, 287, 389
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	605, 667
FspI	TGCGCA	1 cut(s)	614
GlaI	GCGC	2 cut(s)	614, 771
GluI	GCNGC	2 cut(s)	605, 667
HaeIII	GGCC	6 cut(s)	50, 289, 567, 666, 755, 902
HapII	CCGG	1 cut(s)	773
HhaI	GCGC	2 cut(s)	615, 772
Hin1II	CATG	4 cut(s)	116, 322, 409, 480
Hin6I	GCGC	2 cut(s)	613, 770
HinP1I	GCGC	2 cut(s)	613, 770
HinfI	GANTC	3 cut(s)	93, 306, 712
HpaII	CCGG	1 cut(s)	773
HphI	GGTGA	8 cut(s)	50, 118, 154, 163, 256, 472, 508, 845
Hpy166II	GTNNAC	2 cut(s)	109, 247
Hpy188I	TCNGA	4 cut(s)	124, 509, 657, 810
Hpy188III	TCNNGA	3 cut(s)	134, 136, 577
Hpy8I	GTNNAC	2 cut(s)	109, 247
HpyAV	CCTTC	6 cut(s)	142, 205, 427, 711, 745, 878
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	2 cut(s)	524, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 610, 666, 761
HpyF3I	CTNAG	5 cut(s)	63, 354, 385, 483, 656
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	4 cut(s)	116, 322, 409, 480
HspAI	GCGC	2 cut(s)	613, 770
Kzo9I	GATC	1 cut(s)	805
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	2 cut(s)	127, 769
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	1 cut(s)	511
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	4 cut(s)	151, 390, 496, 833
MalI	GATC	1 cut(s)	807
MboI	GATC	1 cut(s)	805
MfeI	CAATTG	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	4 cut(s)	196, 233, 723, 776
MmeI	TCCRAC	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	3 cut(s)	206, 458, 519
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	1 cut(s)	773
MspR9I	CCNGG	1 cut(s)	303
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	68, 610, 666, 761
NcoI	CCATGG	2 cut(s)	112, 318
NdeII	GATC	1 cut(s)	805
NlaIII	CATG	4 cut(s)	116, 322, 409, 480
NlaIV	GGNNCC	4 cut(s)	454, 641, 879, 887
NmeAIII	GCCGAG	1 cut(s)	880
NmuCI	GTSAC	3 cut(s)	151, 496, 833
NsbI	TGCGCA	1 cut(s)	614
OliI	CACNNNNGTG	1 cut(s)	458
PaeR7I	CTCGAG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	567
PciSI	GCTCTTC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	93, 306, 712
PflMI	CCANNNNNTGG	1 cut(s)	802
PkrI	GCNGC	2 cut(s)	606, 668
PsiI	TTATAA	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	4 cut(s)	454, 641, 879, 887
PspPI	GGNCC	4 cut(s)	48, 288, 640, 900
PvuII	CAGCTG	1 cut(s)	103
RseI	CAYNNNNRTG	3 cut(s)	206, 458, 519
SacI	GAGCTC	1 cut(s)	514
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	605, 667
Sau3AI	GATC	1 cut(s)	805
Sau96I	GGNCC	4 cut(s)	48, 288, 640, 900
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	1 cut(s)	511
Sfr274I	CTCGAG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	640
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	3 cut(s)	206, 458, 519
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	4 cut(s)	196, 233, 723, 776
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	3 cut(s)	215, 528, 667
SspI	AATATT	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	5 cut(s)	112, 318, 456, 873, 881
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	4 cut(s)	135, 293, 620, 715
TasI	AATT	4 cut(s)	196, 233, 723, 776
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	3 cut(s)	93, 306, 712
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	523, 596, 640
TseFI	GTSAC	3 cut(s)	151, 496, 833
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	3 cut(s)	151, 496, 833
TspDTI	ATGAA	4 cut(s)	224, 237, 422, 764
TspRI	CASTG	3 cut(s)	523, 596, 640
Van91I	CCANNNNNTGG	1 cut(s)	802
VpaK11BI	GGWCC	1 cut(s)	640
XagI	CCTNNNNNAGG	1 cut(s)	872
XapI	RAATTY	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.