Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001741.1

Orthogroup ID

OG0015080

Physical Location & Seq

Genomic Coordinates Reverse (-)

58311 .. 60973

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001741.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggcaattccagtgattgatttctcaaaactcgatggtgaggaaagggccaccacattggcccagattgctaatggatgtgaggaatggggcttcttccagctggtgaaccatggaatatcagaagacctcctggagagggtgaagaaggtgagcgacgactgctttaagaacgaaagagaagagaacttcaagaagtcgacactggtgcagtcgctgaatgaggaccaaaagctggagaatgtggactgggaagatgtctttacccttcttgatgacaatgaatggccctcgaaaacccctggattcaaggaaactatggcagagtacagagcagaactgaagaaactagccgagagggtcatggaagtgatggatgagaacttggaattaccaaagggatacatgaagaaagccttcaatggtggagaaggtgacagtgcctttttcggcaccaaggtgagccactacccgccctgtcctcaacccgagttggtgacaggtctccgagctcacacagatgccgggggtgtcatcttgctcttccaagatgaccaggtgggaggcctacaaatcctcaaagatggagaatggatagatgtgcagccactgcccaattcgattgtcatcaacactggagaccagattgaagtcttgagcaatggcctctacaagagtgtttggcaccgggttctggccacccgaactgggaacagaagatcaattgcttcattttacaacccatcactgaaggccaccattgctcctgcaccagaactggtggagaaagcaaaccaagaagtggatcagacttatcccaagtttgtgtttggtgactacctgtctgtttatgctgagcagaagttcctccccaaggaaccaagccttcaaatcccagaaaccaccgccacccaccttgaagatctcaactccaggagtccagaatcggcggccccaccgccagaaccggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009692 GO:0009693 GO:0009815 GO:0009987 GO:0010817 GO:0016491 GO:0016638 GO:0016641 GO:0042445 GO:0042446 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

324

Amino Acids

36.32

Weight (kDa)

4.68

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77330
fragaria_vesca	FvH4_2g27800
malus_domestica	MD08G1160900.v1.1
prunus_persica	Prupe.1G490000_v2.0.a1
pyrus_communis	pycom348g00080
rosa_chinensis	RchiOBHm_Chr6g0296661
rosa_laevigata	RLG00000011672
rosa_multiflora	Rmu_sc0001741.1_g000013
rosa_roxburghii	Rroxscaffold_7G00171280
rosa_rugosa	Rorug06G0264000
rosa_samantha	Rh6AG375800 Rh6BG384100 Rh6CG389200 Rh6DG376600
rosa_wichuraiana	Rw6G032760 Rw6G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	452, 684
AccB7I	CCANNNNNTGG	2 cut(s)	235, 802
AccI	GTMKAC	1 cut(s)	200
AciI	CCGC	4 cut(s)	473, 906, 950, 959
AclWI	GGATC	1 cut(s)	813
AcoI	YGGCCR	1 cut(s)	696
AcuI	CTGAAG	2 cut(s)	362, 770
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	6 cut(s)	139, 235, 694, 708, 802, 874
AgsI	TTSAA	6 cut(s)	193, 310, 421, 650, 890, 920
AhdI	GACNNNNNGTC	1 cut(s)	841
AjnI	CCWGG	4 cut(s)	132, 301, 555, 932
AleI	CACNNNNGTG	1 cut(s)	458
AluBI	AGCT	3 cut(s)	103, 235, 512
AluI	AGCT	3 cut(s)	103, 235, 512
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	509, 633
AlwI	GGATC	1 cut(s)	813
AlwNI	CAGNNNCTG	2 cut(s)	217, 610
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	8 cut(s)	48, 60, 287, 565, 664, 696, 753, 951
ApeKI	GCWGC	1 cut(s)	604
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	5 cut(s)	48, 61, 226, 288, 952
AsuC2I	CCSGG	2 cut(s)	526, 689
AsuHPI	GGTGA	8 cut(s)	50, 118, 154, 163, 446, 472, 508, 845
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	698
BanI	GGYRCC	2 cut(s)	452, 684
BanII	GRGCYC	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	4 cut(s)	29, 367, 578, 751
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	4 cut(s)	134, 303, 557, 934
BciVI	GTATCC	1 cut(s)	395
BcnI	CCSGG	2 cut(s)	526, 689
BcoDI	GTCTC	2 cut(s)	509, 633
BfaI	CTAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	922
BisI	GCNGC	2 cut(s)	605, 951
BlpI	GCTNAGC	1 cut(s)	855
BlsI	GCNGC	2 cut(s)	606, 952
Bme1390I	CCNGG	6 cut(s)	134, 303, 526, 557, 689, 934
Bme18I	GGWCC	1 cut(s)	226
BmeRI	GACNNNNNGTC	1 cut(s)	841
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	5 cut(s)	48, 61, 226, 288, 952
BmiI	GGNNCC	4 cut(s)	454, 686, 879, 954
BmrFI	CCNGG	6 cut(s)	134, 303, 526, 557, 689, 934
BmrI	ACTGGG	2 cut(s)	259, 717
BmsI	GCATC	1 cut(s)	511
BmuI	ACTGGG	2 cut(s)	259, 717
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	4 cut(s)	155, 257, 657, 916
Bpu1102I	GCTNAGC	1 cut(s)	855
BpuEI	CTTGAG	1 cut(s)	676
BpuMI	CCSGG	2 cut(s)	526, 689
BsaBI	GATNNNNATC	1 cut(s)	626
BsaI	GGTCTC	2 cut(s)	509, 633
BsaJI	CCNNGG	5 cut(s)	112, 301, 456, 525, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	748, 778
Bsc4I	CCNNNNNNNGG	6 cut(s)	139, 235, 694, 708, 802, 874
Bse118I	RCCGGY	1 cut(s)	967
Bse1I	ACTGG	6 cut(s)	11, 210, 254, 640, 712, 783
Bse3DI	GCAATG	2 cut(s)	667, 759
Bse8I	GATNNNNATC	1 cut(s)	626
BseBI	CCWGG	4 cut(s)	134, 303, 557, 934
BseDI	CCNNGG	5 cut(s)	112, 301, 456, 525, 873
BseGI	GGATG	2 cut(s)	83, 382
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	6 cut(s)	139, 235, 694, 708, 802, 874
BseMI	GCAATG	2 cut(s)	667, 759
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	6 cut(s)	11, 210, 254, 640, 712, 783
BseXI	GCAGC	1 cut(s)	616
BsgI	GTGCAG	3 cut(s)	230, 623, 753
BshFI	GGCC	8 cut(s)	50, 62, 289, 567, 666, 698, 755, 953
BshNI	GGYRCC	2 cut(s)	452, 684
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	3 cut(s)	525, 688, 968
BslI	CCNNNNNNNGG	6 cut(s)	139, 235, 694, 708, 802, 874
BsmAI	GTCTC	2 cut(s)	509, 633
BsnI	GGCC	8 cut(s)	50, 62, 289, 567, 666, 698, 755, 953
Bso31I	GGTCTC	2 cut(s)	509, 633
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp143I	GATC	3 cut(s)	719, 805, 922
Bsp1720I	GCTNAGC	1 cut(s)	855
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	4 cut(s)	473, 906, 950, 959
BspANI	GGCC	8 cut(s)	50, 62, 289, 567, 666, 698, 755, 953
BspCNI	CTCAG	1 cut(s)	847
BspLI	GGNNCC	4 cut(s)	454, 686, 879, 954
BspPI	GGATC	1 cut(s)	813
BspQI	GCTCTTC	1 cut(s)	548
BspT107I	GGYRCC	2 cut(s)	452, 684
BspTNI	GGTCTC	2 cut(s)	509, 633
BsrDI	GCAATG	2 cut(s)	667, 759
BsrFI	RCCGGY	1 cut(s)	967
BsrI	ACTGG	6 cut(s)	11, 210, 254, 640, 712, 783
BssAI	RCCGGY	1 cut(s)	967
BssECI	CCNNGG	5 cut(s)	112, 301, 456, 525, 873
BssMI	GATC	3 cut(s)	719, 805, 922
BssT1I	CCWWGG	3 cut(s)	112, 456, 873
Bst2UI	CCWGG	4 cut(s)	134, 303, 557, 934
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	177, 548
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstDEI	CTNAG	1 cut(s)	855
BstDSI	CCRYGG	1 cut(s)	112
BstENI	CCTNNNNNAGG	1 cut(s)	872
BstF5I	GGATG	2 cut(s)	83, 382
BstKTI	GATC	3 cut(s)	722, 808, 925
BstMAI	GTCTC	2 cut(s)	509, 633
BstMBI	GATC	3 cut(s)	719, 805, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 162, 610, 761
BstNI	CCWGG	4 cut(s)	134, 303, 557, 934
BstSCI	CCNGG	6 cut(s)	132, 301, 524, 555, 687, 932
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	922
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	922
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	8 cut(s)	50, 62, 289, 567, 666, 698, 755, 953
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	83, 382
BtsI	GCAGTG	1 cut(s)	608
BtsIMutI	CAGTG	6 cut(s)	18, 203, 445, 608, 633, 746
CaiI	CAGNNNCTG	2 cut(s)	217, 610
Cfr10I	RCCGGY	1 cut(s)	967
Cfr13I	GGNCC	5 cut(s)	48, 61, 226, 288, 952
CsiI	ACCWGGT	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	328
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	3 cut(s)	113, 364, 406
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	855
DpnI	GATC	3 cut(s)	721, 807, 924
DpnII	GATC	3 cut(s)	719, 805, 922
DriI	GACNNNNNGTC	1 cut(s)	841
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	2 cut(s)	177, 548
Eam1105I	GACNNNNNGTC	1 cut(s)	841
EarI	CTCTTC	2 cut(s)	177, 548
Ecl136II	GAGCTC	1 cut(s)	512
Eco130I	CCWWGG	3 cut(s)	112, 456, 873
Eco147I	AGGCCT	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	514
Eco31I	GGTCTC	2 cut(s)	509, 633
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	362, 770
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	512
EcoNI	CCTNNNNNAGG	1 cut(s)	872
EcoRII	CCWGG	4 cut(s)	132, 301, 555, 932
EcoT14I	CCWWGG	3 cut(s)	112, 456, 873
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	3 cut(s)	112, 456, 873
FaeI	CATG	3 cut(s)	116, 367, 409
FaiI	YATR	5 cut(s)	114, 320, 365, 407, 852
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	3 cut(s)	112, 363, 405
FauI	CCCGC	1 cut(s)	480
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	605, 951
FokI	GGATG	2 cut(s)	90, 389
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	605, 951
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	2 cut(s)	605, 951
GsuI	CTGGAG	4 cut(s)	155, 257, 657, 916
HaeIII	GGCC	8 cut(s)	50, 62, 289, 567, 666, 698, 755, 953
HapII	CCGG	3 cut(s)	525, 688, 968
Hin1II	CATG	3 cut(s)	116, 367, 409
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	3 cut(s)	306, 937, 944
HpaII	CCGG	3 cut(s)	525, 688, 968
HphI	GGTGA	8 cut(s)	50, 118, 154, 163, 446, 472, 508, 845
Hpy166II	GTNNAC	3 cut(s)	109, 201, 247
Hpy188I	TCNGA	3 cut(s)	124, 509, 810
Hpy188III	TCNNGA	4 cut(s)	193, 272, 655, 941
Hpy8I	GTNNAC	3 cut(s)	109, 201, 247
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	6 cut(s)	142, 278, 425, 427, 745, 896
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	3 cut(s)	211, 604, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 162, 610, 761
HpyF3I	CTNAG	1 cut(s)	855
Hsp92II	CATG	3 cut(s)	116, 367, 409
Kzo9I	GATC	3 cut(s)	719, 805, 922
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	1 cut(s)	769
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	1 cut(s)	511
MabI	ACCWGGT	1 cut(s)	555
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	3 cut(s)	434, 496, 833
MalI	GATC	3 cut(s)	721, 807, 924
MboI	GATC	3 cut(s)	719, 805, 922
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	698
MluCI	AATT	4 cut(s)	6, 389, 616, 723
MluNI	TGGCCA	1 cut(s)	698
MlyI	GAGTC	1 cut(s)	946
Mox20I	TGGCCA	1 cut(s)	698
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	698
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	3 cut(s)	368, 458, 519
Msp20I	TGGCCA	1 cut(s)	698
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	3 cut(s)	525, 688, 968
MspR9I	CCNGG	6 cut(s)	134, 303, 526, 557, 689, 934
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	4 cut(s)	134, 303, 557, 934
MwoI	GCNNNNNNNGC	4 cut(s)	68, 162, 610, 761
NciI	CCSGG	2 cut(s)	526, 689
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	3 cut(s)	719, 805, 922
NlaIII	CATG	3 cut(s)	116, 367, 409
NlaIV	GGNNCC	4 cut(s)	454, 686, 879, 954
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	3 cut(s)	434, 496, 833
OliI	CACNNNNGTG	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	567
PciSI	GCTCTTC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	306, 944
PflMI	CCANNNNNTGG	2 cut(s)	235, 802
PfoI	TCCNGGA	2 cut(s)	132, 932
PkrI	GCNGC	2 cut(s)	606, 952
PleI	GAGTC	1 cut(s)	945
PpsI	GAGTC	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	514
Psp6I	CCWGG	4 cut(s)	132, 301, 555, 932
PspGI	CCWGG	4 cut(s)	132, 301, 555, 932
PspN4I	GGNNCC	4 cut(s)	454, 686, 879, 954
PspPI	GGNCC	5 cut(s)	48, 61, 226, 288, 952
PstNI	CAGNNNCTG	2 cut(s)	217, 610
PsuI	RGATCY	1 cut(s)	922
PvuII	CAGCTG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	3 cut(s)	368, 458, 519
SacI	GAGCTC	1 cut(s)	514
SalI	GTCGAC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	605, 951
Sau3AI	GATC	3 cut(s)	719, 805, 922
Sau96I	GGNCC	5 cut(s)	48, 61, 226, 288, 952
SchI	GAGTC	1 cut(s)	946
ScrFI	CCNGG	6 cut(s)	134, 303, 526, 557, 689, 934
SduI	GDGCHC	1 cut(s)	514
SexAI	ACCWGGT	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	3 cut(s)	368, 458, 519
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
Sse9I	AATT	4 cut(s)	6, 389, 616, 723
SseBI	AGGCCT	1 cut(s)	567
SsiI	CCGC	4 cut(s)	473, 906, 950, 959
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	514
StuI	AGGCCT	1 cut(s)	567
StyD4I	CCNGG	6 cut(s)	132, 301, 524, 555, 687, 932
StyI	CCWWGG	3 cut(s)	112, 456, 873
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	4 cut(s)	33, 200, 293, 620
TasI	AATT	4 cut(s)	6, 389, 616, 723
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	1 cut(s)	953
TfiI	GAWTC	2 cut(s)	306, 944
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	6 cut(s)	18, 210, 445, 615, 640, 753
TseFI	GTSAC	3 cut(s)	434, 496, 833
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	3 cut(s)	434, 496, 833
TspDTI	ATGAA	3 cut(s)	297, 422, 720
TspRI	CASTG	6 cut(s)	18, 210, 445, 615, 640, 753
Van91I	CCANNNNNTGG	2 cut(s)	235, 802
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.