Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015080

Physical Location & Seq

Genomic Coordinates Forward (+)

57100032 .. 57101213

Gene Structure 1182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G032850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCAATTCCAGTGATTGATTTCTCAAAACTCGATGGTGAGGAAAGGGCCACCACATTGGCCCAGATTGCAAATGGATGTGAGGAATGGGGGTTCTTCCAGCTGGTGAACCATGGAATATCAGAAGACCTCCTGGAGAGGGTGAAGAAGGTGAGCGACGACTGCTTTAAGAACGAAAGAGAAGAGAACTTCAAGAAGTCGACACTGGTGCAGTCGCTGAATGAGGACCAAAAGCTGGAGAATGTGGACTGGGAAGATGTCTTTACCCTTCTTGATGACAATGAATGGCCCTCGAAAACCCCTGGATTCAAAGCAGAACTGAAGAAACTAGCCGAGAGGGTCATGGAAGTGATGGATGAGAACTTGGAATTACCAAAGGGATACATGAAGAAAGCCTTCAATGGTGGAGAAGGTGACAGTGCCTTTTTCGGCACCAAGGTGAGCCACTACCCGCCCTGTCCTCAACCCGAGTTGGTGACAGGTCTCCGAGCTCACACAGATGCCGGGGGTGTCATCTTGCTCTTCCAAGATGACAGAGTGTTTTGGCACCGGGTTCTGGCCACCCGGACTGGGAACAGAAGATCAATTGCTTCATTTTACAACCCATCACTGAAGGCCACCATTGCTCCTGCACCAGAACTGGTGGAGAAAGCAAACCAAGAAGTGGATCAGACTTATCCCAAGTTTGTGTTTGGTGACTACCTGTCTGTTTATGCTGAGCAGAAGTTCCTCCCCAAGGAACCAAGGTTCCAAGCTGTGAGAGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009692 GO:0009693 GO:0009815 GO:0009987 GO:0010817 GO:0016491 GO:0016638 GO:0016641 GO:0042445 GO:0042446 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

256

Amino Acids

29.11

Weight (kDa)

5.06

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 93	3.9e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	147 - 178	8.9e-07	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77330
fragaria_vesca	FvH4_2g27800
malus_domestica	MD08G1160900.v1.1
prunus_persica	Prupe.1G490000_v2.0.a1
pyrus_communis	pycom348g00080
rosa_chinensis	RchiOBHm_Chr6g0296661
rosa_laevigata	RLG00000011672
rosa_multiflora	Rmu_sc0001741.1_g000013
rosa_roxburghii	Rroxscaffold_7G00171280
rosa_rugosa	Rorug06G0264000
rosa_samantha	Rh6AG375800 Rh6BG384100 Rh6CG389200 Rh6DG376600
rosa_wichuraiana	Rw6G032760 Rw6G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	431, 546
AccB7I	CCANNNNNTGG	2 cut(s)	235, 664
AccI	GTMKAC	1 cut(s)	200
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	558
AcuI	CTGAAG	2 cut(s)	341, 632
AfiI	CCNNNNNNNGG	6 cut(s)	139, 235, 556, 570, 664, 736
AgsI	TTSAA	3 cut(s)	193, 310, 400
AhdI	GACNNNNNGTC	1 cut(s)	703
AjnI	CCWGG	2 cut(s)	132, 301
AleI	CACNNNNGTG	1 cut(s)	437
AloI	GAACNNNNNNTCC	6 cut(s)	77, 109, 731, 732, 763, 764
AluBI	AGCT	4 cut(s)	103, 235, 491, 755
AluI	AGCT	4 cut(s)	103, 235, 491, 755
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	675
AlwNI	CAGNNNCTG	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	5 cut(s)	48, 60, 287, 558, 615
Asp700I	GAANNNNTTC	1 cut(s)	395
AspS9I	GGNCC	4 cut(s)	48, 61, 226, 288
AsuC2I	CCSGG	3 cut(s)	505, 551, 565
AsuHPI	GGTGA	8 cut(s)	50, 118, 154, 163, 425, 451, 487, 707
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	560
BanI	GGYRCC	2 cut(s)	431, 546
BanII	GRGCYC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	493
BccI	CCATC	3 cut(s)	29, 346, 613
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	2 cut(s)	134, 303
BciVI	GTATCC	1 cut(s)	374
BcnI	CCSGG	3 cut(s)	505, 551, 565
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	717
Bme1390I	CCNGG	5 cut(s)	134, 303, 505, 551, 565
Bme18I	GGWCC	1 cut(s)	226
BmeRI	GACNNNNNGTC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	4 cut(s)	48, 61, 226, 288
BmiI	GGNNCC	4 cut(s)	433, 548, 741, 749
BmrFI	CCNGG	5 cut(s)	134, 303, 505, 551, 565
BmrI	ACTGGG	2 cut(s)	259, 579
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	2 cut(s)	259, 579
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	2 cut(s)	155, 257
Bpu1102I	GCTNAGC	1 cut(s)	717
BpuMI	CCSGG	3 cut(s)	505, 551, 565
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	6 cut(s)	112, 301, 435, 504, 735, 743
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	6 cut(s)	139, 235, 556, 570, 664, 736
Bse1I	ACTGG	5 cut(s)	11, 210, 254, 574, 645
Bse3DI	GCAATG	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	134, 303
BseDI	CCNNGG	6 cut(s)	112, 301, 435, 504, 735, 743
BseGI	GGATG	2 cut(s)	83, 361
BseLI	CCNNNNNNNGG	6 cut(s)	139, 235, 556, 570, 664, 736
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	5 cut(s)	11, 210, 254, 574, 645
BsgI	GTGCAG	2 cut(s)	230, 615
BshFI	GGCC	5 cut(s)	50, 62, 289, 560, 617
BshNI	GGYRCC	2 cut(s)	431, 546
BsiHKAI	GWGCWC	1 cut(s)	493
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	3 cut(s)	504, 550, 565
BslI	CCNNNNNNNGG	6 cut(s)	139, 235, 556, 570, 664, 736
BsmAI	GTCTC	1 cut(s)	488
BsnI	GGCC	5 cut(s)	50, 62, 289, 560, 617
Bso31I	GGTCTC	1 cut(s)	488
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	581, 667
Bsp1720I	GCTNAGC	1 cut(s)	717
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	5 cut(s)	50, 62, 289, 560, 617
BspCNI	CTCAG	1 cut(s)	709
BspLI	GGNNCC	4 cut(s)	433, 548, 741, 749
BspPI	GGATC	1 cut(s)	675
BspQI	GCTCTTC	1 cut(s)	527
BspT107I	GGYRCC	2 cut(s)	431, 546
BspTNI	GGTCTC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	621
BsrI	ACTGG	5 cut(s)	11, 210, 254, 574, 645
BssECI	CCNNGG	6 cut(s)	112, 301, 435, 504, 735, 743
BssMI	GATC	2 cut(s)	581, 667
BssT1I	CCWWGG	4 cut(s)	112, 435, 735, 743
Bst2UI	CCWGG	2 cut(s)	134, 303
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	2 cut(s)	177, 527
BstDEI	CTNAG	1 cut(s)	717
BstDSI	CCRYGG	1 cut(s)	112
BstENI	CCTNNNNNAGG	1 cut(s)	734
BstF5I	GGATG	2 cut(s)	83, 361
BstKTI	GATC	2 cut(s)	584, 670
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	2 cut(s)	581, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 162, 623, 761
BstNI	CCWGG	2 cut(s)	134, 303
BstSCI	CCNGG	5 cut(s)	132, 301, 503, 549, 563
BstV2I	GAAGAC	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	5 cut(s)	50, 62, 289, 560, 617
BtgI	CCRYGG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	83, 361
BtsIMutI	CAGTG	4 cut(s)	18, 203, 424, 608
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr13I	GGNCC	4 cut(s)	48, 61, 226, 288
CviAII	CATG	3 cut(s)	113, 343, 385
DdeI	CTNAG	1 cut(s)	717
DpnI	GATC	2 cut(s)	583, 669
DpnII	GATC	2 cut(s)	581, 667
DriI	GACNNNNNGTC	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	2 cut(s)	177, 527
Eam1105I	GACNNNNNGTC	1 cut(s)	703
EarI	CTCTTC	2 cut(s)	177, 527
Ecl136II	GAGCTC	1 cut(s)	491
Eco130I	CCWWGG	4 cut(s)	112, 435, 735, 743
Eco24I	GRGCYC	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	491
Eco57I	CTGAAG	2 cut(s)	341, 632
Eco88I	CYCGRG	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	491
EcoNI	CCTNNNNNAGG	1 cut(s)	734
EcoRII	CCWGG	2 cut(s)	132, 301
EcoT14I	CCWWGG	4 cut(s)	112, 435, 735, 743
EcoT38I	GRGCYC	1 cut(s)	493
ErhI	CCWWGG	4 cut(s)	112, 435, 735, 743
FaeI	CATG	3 cut(s)	116, 346, 388
FaiI	YATR	4 cut(s)	114, 344, 386, 714
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	3 cut(s)	112, 342, 384
FauI	CCCGC	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	200
FokI	GGATG	2 cut(s)	90, 368
FriOI	GRGCYC	1 cut(s)	493
FspBI	CTAG	1 cut(s)	329
GsuI	CTGGAG	2 cut(s)	155, 257
HaeIII	GGCC	5 cut(s)	50, 62, 289, 560, 617
HapII	CCGG	3 cut(s)	504, 550, 565
Hin1II	CATG	3 cut(s)	116, 346, 388
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	306
HpaII	CCGG	3 cut(s)	504, 550, 565
HphI	GGTGA	8 cut(s)	50, 118, 154, 163, 425, 451, 487, 707
Hpy166II	GTNNAC	3 cut(s)	109, 201, 247
Hpy188I	TCNGA	4 cut(s)	124, 488, 672, 770
Hpy188III	TCNNGA	2 cut(s)	193, 272
Hpy8I	GTNNAC	3 cut(s)	109, 201, 247
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	5 cut(s)	142, 278, 404, 406, 607
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	71, 211, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 162, 623, 761
HpyF3I	CTNAG	1 cut(s)	717
Hsp92II	CATG	3 cut(s)	116, 346, 388
Kzo9I	GATC	2 cut(s)	581, 667
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	1 cut(s)	631
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	3 cut(s)	413, 475, 695
MalI	GATC	2 cut(s)	583, 669
MboI	GATC	2 cut(s)	581, 667
MboII	GAAGA	9 cut(s)	88, 137, 157, 194, 266, 334, 400, 514, 591
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	493
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	3 cut(s)	6, 368, 585
MluNI	TGGCCA	1 cut(s)	560
MnlI	CCTC	9 cut(s)	34, 76, 132, 140, 217, 301, 330, 471, 740
Mox20I	TGGCCA	1 cut(s)	560
MroXI	GAANNNNTTC	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	3 cut(s)	347, 437, 498
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	3 cut(s)	504, 550, 565
MspR9I	CCNGG	5 cut(s)	134, 303, 505, 551, 565
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	2 cut(s)	134, 303
MwoI	GCNNNNNNNGC	4 cut(s)	68, 162, 623, 761
NciI	CCSGG	3 cut(s)	505, 551, 565
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	2 cut(s)	581, 667
NlaIII	CATG	3 cut(s)	116, 346, 388
NlaIV	GGNNCC	4 cut(s)	433, 548, 741, 749
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	3 cut(s)	413, 475, 695
OliI	CACNNNNGTG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	306
PflMI	CCANNNNNTGG	2 cut(s)	235, 664
PfoI	TCCNGGA	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	493
Psp6I	CCWGG	2 cut(s)	132, 301
PspGI	CCWGG	2 cut(s)	132, 301
PspN4I	GGNNCC	4 cut(s)	433, 548, 741, 749
PspPI	GGNCC	4 cut(s)	48, 61, 226, 288
PstNI	CAGNNNCTG	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	103
RseI	CAYNNNNRTG	3 cut(s)	347, 437, 498
SacI	GAGCTC	1 cut(s)	493
SalI	GTCGAC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	168
Sau3AI	GATC	2 cut(s)	581, 667
Sau96I	GGNCC	4 cut(s)	48, 61, 226, 288
ScrFI	CCNGG	5 cut(s)	134, 303, 505, 551, 565
SduI	GDGCHC	1 cut(s)	493
SfaNI	GCATC	1 cut(s)	490
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	3 cut(s)	347, 437, 498
Sse9I	AATT	3 cut(s)	6, 368, 585
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	1 cut(s)	493
StyD4I	CCNGG	5 cut(s)	132, 301, 503, 549, 563
StyI	CCWWGG	4 cut(s)	112, 435, 735, 743
TaaI	ACNGT	1 cut(s)	419
TaqI	TCGA	3 cut(s)	33, 200, 293
TasI	AATT	3 cut(s)	6, 368, 585
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	4 cut(s)	18, 210, 424, 615
TseFI	GTSAC	3 cut(s)	413, 475, 695
Tsp45I	GTSAC	3 cut(s)	413, 475, 695
TspDTI	ATGAA	3 cut(s)	297, 401, 582
TspRI	CASTG	4 cut(s)	18, 210, 424, 615
Van91I	CCANNNNNTGG	2 cut(s)	235, 664
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.